Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16070 and CSW01_16075 are separated by 204 nucleotides CSW01_16075 and CSW01_16080 overlap by 5 nucleotides CSW01_16080 and CSW01_16085 overlap by 23 nucleotides CSW01_16085 and CSW01_16090 are separated by 169 nucleotides CSW01_16090 and CSW01_16095 are separated by 115 nucleotides
CSW01_16070: CSW01_16070 - isomerase, at 368,810 to 369,649
_16070
CSW01_16075: CSW01_16075 - hypothetical protein, at 369,854 to 370,684
_16075
CSW01_16080: CSW01_16080 - hypothetical protein, at 370,680 to 370,763
_16080
CSW01_16085: CSW01_16085 - hypothetical protein, at 370,741 to 371,223
_16085
CSW01_16090: CSW01_16090 - hypothetical protein, at 371,393 to 371,554
_16090
CSW01_16095: CSW01_16095 - hypothetical protein, at 371,670 to 372,545
_16095
Position (kb) 369
370
371 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 368.946 kb on + strand, within CSW01_16070 at 369.005 kb on + strand, within CSW01_16070 at 369.021 kb on - strand, within CSW01_16070 at 369.057 kb on - strand, within CSW01_16070 at 369.113 kb on - strand, within CSW01_16070 at 369.238 kb on + strand, within CSW01_16070 at 369.246 kb on - strand, within CSW01_16070 at 369.246 kb on - strand, within CSW01_16070 at 369.324 kb on + strand, within CSW01_16070 at 369.483 kb on + strand, within CSW01_16070 at 369.483 kb on + strand, within CSW01_16070 at 369.488 kb on + strand, within CSW01_16070 at 369.491 kb on - strand, within CSW01_16070 at 369.498 kb on + strand, within CSW01_16070 at 369.586 kb on - strand at 369.611 kb on + strand at 369.713 kb on + strand at 369.713 kb on + strand at 370.015 kb on + strand, within CSW01_16075 at 370.029 kb on - strand, within CSW01_16075 at 370.029 kb on - strand, within CSW01_16075 at 370.029 kb on - strand, within CSW01_16075 at 370.029 kb on - strand, within CSW01_16075 at 370.133 kb on - strand, within CSW01_16075 at 370.435 kb on + strand, within CSW01_16075 at 370.435 kb on + strand, within CSW01_16075 at 370.435 kb on + strand, within CSW01_16075 at 370.443 kb on - strand, within CSW01_16075 at 370.443 kb on - strand, within CSW01_16075 at 370.448 kb on + strand, within CSW01_16075 at 370.550 kb on + strand, within CSW01_16075 at 370.579 kb on - strand, within CSW01_16075 at 370.613 kb on + strand at 370.621 kb on - strand at 370.670 kb on + strand at 370.670 kb on + strand at 370.678 kb on - strand at 370.678 kb on - strand at 370.818 kb on - strand, within CSW01_16085 at 370.820 kb on - strand, within CSW01_16085 at 371.135 kb on + strand, within CSW01_16085 at 371.140 kb on + strand, within CSW01_16085 at 371.145 kb on + strand, within CSW01_16085 at 371.172 kb on + strand, within CSW01_16085 at 371.557 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 368,946 + CSW01_16070 0.16 +0.8 369,005 + CSW01_16070 0.23 -1.1 369,021 - CSW01_16070 0.25 +0.4 369,057 - CSW01_16070 0.29 +0.9 369,113 - CSW01_16070 0.36 -2.4 369,238 + CSW01_16070 0.51 -1.1 369,246 - CSW01_16070 0.52 +3.0 369,246 - CSW01_16070 0.52 -1.9 369,324 + CSW01_16070 0.61 +0.9 369,483 + CSW01_16070 0.80 -0.7 369,483 + CSW01_16070 0.80 -0.7 369,488 + CSW01_16070 0.81 -3.5 369,491 - CSW01_16070 0.81 +0.5 369,498 + CSW01_16070 0.82 -0.5 369,586 - -1.8 369,611 + +0.7 369,713 + +0.3 369,713 + -0.3 370,015 + CSW01_16075 0.19 -0.3 370,029 - CSW01_16075 0.21 -0.2 370,029 - CSW01_16075 0.21 -1.0 370,029 - CSW01_16075 0.21 -2.1 370,029 - CSW01_16075 0.21 -1.1 370,133 - CSW01_16075 0.34 +1.4 370,435 + CSW01_16075 0.70 +1.3 370,435 + CSW01_16075 0.70 +1.3 370,435 + CSW01_16075 0.70 +0.2 370,443 - CSW01_16075 0.71 +2.6 370,443 - CSW01_16075 0.71 -0.7 370,448 + CSW01_16075 0.71 +0.7 370,550 + CSW01_16075 0.84 +0.3 370,579 - CSW01_16075 0.87 -1.5 370,613 + +0.7 370,621 - +0.4 370,670 + +2.3 370,670 + -0.3 370,678 - +0.5 370,678 - -0.1 370,818 - CSW01_16085 0.16 +0.8 370,820 - CSW01_16085 0.16 +1.0 371,135 + CSW01_16085 0.82 -2.4 371,140 + CSW01_16085 0.83 -0.3 371,145 + CSW01_16085 0.84 +1.5 371,172 + CSW01_16085 0.89 -0.3 371,557 - +0.3
Or see this region's nucleotide sequence