Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16015 and CSW01_16020 are separated by 294 nucleotides CSW01_16020 and CSW01_16025 are separated by 188 nucleotides CSW01_16025 and CSW01_16030 are separated by 20 nucleotides
CSW01_16015: CSW01_16015 - hypothetical protein, at 364,918 to 365,571
_16015
CSW01_16020: CSW01_16020 - DUF3709 domain-containing protein, at 365,866 to 366,099
_16020
CSW01_16025: CSW01_16025 - hypothetical protein, at 366,288 to 366,481
_16025
CSW01_16030: CSW01_16030 - DUF3709 domain-containing protein, at 366,502 to 366,735
_16030
Position (kb) 365
366
367 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 364.876 kb on - strand at 364.876 kb on - strand at 365.031 kb on + strand, within CSW01_16015 at 365.097 kb on - strand, within CSW01_16015 at 365.106 kb on - strand, within CSW01_16015 at 365.139 kb on - strand, within CSW01_16015 at 365.187 kb on + strand, within CSW01_16015 at 365.195 kb on - strand, within CSW01_16015 at 365.321 kb on - strand, within CSW01_16015 at 365.338 kb on + strand, within CSW01_16015 at 365.338 kb on + strand, within CSW01_16015 at 365.338 kb on + strand, within CSW01_16015 at 365.338 kb on + strand, within CSW01_16015 at 365.369 kb on + strand, within CSW01_16015 at 365.387 kb on - strand, within CSW01_16015 at 365.420 kb on + strand, within CSW01_16015 at 365.427 kb on + strand, within CSW01_16015 at 365.435 kb on - strand, within CSW01_16015 at 365.515 kb on + strand at 365.903 kb on - strand, within CSW01_16020 at 365.942 kb on - strand, within CSW01_16020 at 365.962 kb on + strand, within CSW01_16020 at 365.970 kb on - strand, within CSW01_16020 at 365.972 kb on + strand, within CSW01_16020 at 365.980 kb on - strand, within CSW01_16020 at 366.078 kb on - strand at 366.078 kb on - strand at 366.449 kb on - strand, within CSW01_16025 at 366.504 kb on - strand at 366.506 kb on - strand at 366.547 kb on - strand, within CSW01_16030 at 366.547 kb on - strand, within CSW01_16030 at 366.557 kb on - strand, within CSW01_16030 at 366.783 kb on - strand at 366.783 kb on - strand at 366.826 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 364,876 - -1.5 364,876 - +1.4 365,031 + CSW01_16015 0.17 +0.7 365,097 - CSW01_16015 0.27 -0.5 365,106 - CSW01_16015 0.29 -2.7 365,139 - CSW01_16015 0.34 +0.4 365,187 + CSW01_16015 0.41 -0.1 365,195 - CSW01_16015 0.42 +0.5 365,321 - CSW01_16015 0.62 +0.2 365,338 + CSW01_16015 0.64 +0.2 365,338 + CSW01_16015 0.64 -3.2 365,338 + CSW01_16015 0.64 -0.6 365,338 + CSW01_16015 0.64 +0.1 365,369 + CSW01_16015 0.69 +0.5 365,387 - CSW01_16015 0.72 +2.4 365,420 + CSW01_16015 0.77 -0.4 365,427 + CSW01_16015 0.78 +0.9 365,435 - CSW01_16015 0.79 -0.2 365,515 + +0.4 365,903 - CSW01_16020 0.16 +0.6 365,942 - CSW01_16020 0.32 -3.0 365,962 + CSW01_16020 0.41 -1.6 365,970 - CSW01_16020 0.44 +0.6 365,972 + CSW01_16020 0.45 +1.3 365,980 - CSW01_16020 0.49 -0.5 366,078 - -1.5 366,078 - -1.9 366,449 - CSW01_16025 0.83 +0.9 366,504 - -0.2 366,506 - +0.5 366,547 - CSW01_16030 0.19 -0.3 366,547 - CSW01_16030 0.19 -0.0 366,557 - CSW01_16030 0.24 +0.2 366,783 - +2.7 366,783 - -3.0 366,826 - +0.7
Or see this region's nucleotide sequence