Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15940

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15930 and CSW01_15935 are separated by 60 nucleotidesCSW01_15935 and CSW01_15940 overlap by 4 nucleotidesCSW01_15940 and CSW01_15945 are separated by 387 nucleotides CSW01_15930: CSW01_15930 - hypothetical protein, at 353,998 to 354,612 _15930 CSW01_15935: CSW01_15935 - chemotaxis protein, at 354,673 to 355,368 _15935 CSW01_15940: CSW01_15940 - IS3 family transposase, at 355,365 to 356,542 _15940 CSW01_15945: CSW01_15945 - DUF1817 domain-containing protein, at 356,930 to 357,967 _15945 Position (kb) 355 356 357Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 354.368 kb on + strand, within CSW01_15930at 354.448 kb on - strand, within CSW01_15930at 354.448 kb on - strand, within CSW01_15930at 354.458 kb on - strand, within CSW01_15930at 354.533 kb on - strand, within CSW01_15930at 354.557 kb on + strandat 356.623 kb on + strandat 356.623 kb on + strandat 356.678 kb on + strandat 356.814 kb on - strandat 356.814 kb on - strandat 356.814 kb on - strandat 357.002 kb on + strandat 357.118 kb on + strand, within CSW01_15945at 357.152 kb on - strand, within CSW01_15945at 357.157 kb on + strand, within CSW01_15945at 357.160 kb on - strand, within CSW01_15945at 357.160 kb on - strand, within CSW01_15945at 357.180 kb on - strand, within CSW01_15945at 357.274 kb on + strand, within CSW01_15945at 357.274 kb on + strand, within CSW01_15945at 357.274 kb on + strand, within CSW01_15945at 357.274 kb on + strand, within CSW01_15945at 357.274 kb on + strand, within CSW01_15945at 357.274 kb on + strand, within CSW01_15945at 357.274 kb on + strand, within CSW01_15945at 357.282 kb on - strand, within CSW01_15945at 357.282 kb on - strand, within CSW01_15945at 357.288 kb on + strand, within CSW01_15945at 357.301 kb on - strand, within CSW01_15945at 357.306 kb on - strand, within CSW01_15945at 357.374 kb on + strand, within CSW01_15945at 357.384 kb on + strand, within CSW01_15945at 357.384 kb on + strand, within CSW01_15945at 357.384 kb on + strand, within CSW01_15945at 357.392 kb on - strand, within CSW01_15945at 357.392 kb on - strand, within CSW01_15945at 357.392 kb on - strand, within CSW01_15945at 357.392 kb on - strand, within CSW01_15945at 357.392 kb on - strand, within CSW01_15945at 357.392 kb on - strand, within CSW01_15945at 357.392 kb on - strand, within CSW01_15945at 357.399 kb on + strand, within CSW01_15945at 357.427 kb on + strand, within CSW01_15945at 357.427 kb on + strand, within CSW01_15945at 357.427 kb on + strand, within CSW01_15945at 357.440 kb on - strand, within CSW01_15945at 357.495 kb on + strand, within CSW01_15945at 357.516 kb on + strand, within CSW01_15945at 357.516 kb on + strand, within CSW01_15945at 357.518 kb on + strand, within CSW01_15945

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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354,368 + CSW01_15930 0.60 +0.1
354,448 - CSW01_15930 0.73 -0.4
354,448 - CSW01_15930 0.73 -0.2
354,458 - CSW01_15930 0.75 +0.7
354,533 - CSW01_15930 0.87 -1.6
354,557 + -1.2
356,623 + -1.3
356,623 + -0.0
356,678 + +0.4
356,814 - -3.0
356,814 - -0.1
356,814 - -0.4
357,002 + +1.1
357,118 + CSW01_15945 0.18 +2.0
357,152 - CSW01_15945 0.21 -3.3
357,157 + CSW01_15945 0.22 +0.5
357,160 - CSW01_15945 0.22 -2.2
357,160 - CSW01_15945 0.22 -0.4
357,180 - CSW01_15945 0.24 -3.4
357,274 + CSW01_15945 0.33 +0.2
357,274 + CSW01_15945 0.33 -1.4
357,274 + CSW01_15945 0.33 -0.5
357,274 + CSW01_15945 0.33 -0.2
357,274 + CSW01_15945 0.33 +0.0
357,274 + CSW01_15945 0.33 -2.3
357,274 + CSW01_15945 0.33 -0.1
357,282 - CSW01_15945 0.34 -0.1
357,282 - CSW01_15945 0.34 +0.1
357,288 + CSW01_15945 0.34 +0.9
357,301 - CSW01_15945 0.36 +0.6
357,306 - CSW01_15945 0.36 +0.6
357,374 + CSW01_15945 0.43 +0.3
357,384 + CSW01_15945 0.44 -0.6
357,384 + CSW01_15945 0.44 +0.8
357,384 + CSW01_15945 0.44 -0.4
357,392 - CSW01_15945 0.45 -0.5
357,392 - CSW01_15945 0.45 +1.9
357,392 - CSW01_15945 0.45 +0.4
357,392 - CSW01_15945 0.45 +0.7
357,392 - CSW01_15945 0.45 -2.4
357,392 - CSW01_15945 0.45 -0.3
357,392 - CSW01_15945 0.45 -2.2
357,399 + CSW01_15945 0.45 -2.6
357,427 + CSW01_15945 0.48 -0.5
357,427 + CSW01_15945 0.48 -0.2
357,427 + CSW01_15945 0.48 +0.7
357,440 - CSW01_15945 0.49 -2.9
357,495 + CSW01_15945 0.54 -2.2
357,516 + CSW01_15945 0.56 -0.4
357,516 + CSW01_15945 0.56 -0.1
357,518 + CSW01_15945 0.57 +0.6

Or see this region's nucleotide sequence