Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15895 and CSW01_15900 are separated by 213 nucleotides CSW01_15900 and CSW01_15905 are separated by 2 nucleotides CSW01_15905 and CSW01_15910 are separated by 56 nucleotides CSW01_15910 and CSW01_15915 are separated by 280 nucleotides
CSW01_15895: CSW01_15895 - hypothetical protein, at 349,692 to 350,375
_15895
CSW01_15900: CSW01_15900 - hypothetical protein, at 350,589 to 350,855
_15900
CSW01_15905: CSW01_15905 - hypothetical protein, at 350,858 to 350,953
_15905
CSW01_15910: CSW01_15910 - hypothetical protein, at 351,010 to 351,609
_15910
CSW01_15915: CSW01_15915 - restriction endonuclease, at 351,890 to 352,825
_15915
Position (kb) 351
352 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 350.053 kb on + strand, within CSW01_15895 at 350.053 kb on + strand, within CSW01_15895 at 350.068 kb on - strand, within CSW01_15895 at 350.073 kb on + strand, within CSW01_15895 at 350.198 kb on - strand, within CSW01_15895 at 350.220 kb on + strand, within CSW01_15895 at 350.302 kb on + strand, within CSW01_15895 at 350.312 kb on + strand at 350.382 kb on + strand at 350.382 kb on + strand at 350.390 kb on - strand at 350.404 kb on - strand at 350.434 kb on + strand at 350.442 kb on - strand at 350.473 kb on + strand at 350.512 kb on + strand at 350.652 kb on + strand, within CSW01_15900 at 350.732 kb on - strand, within CSW01_15900 at 350.737 kb on + strand, within CSW01_15900 at 350.737 kb on + strand, within CSW01_15900 at 350.737 kb on + strand, within CSW01_15900 at 350.745 kb on + strand, within CSW01_15900 at 350.812 kb on - strand, within CSW01_15900 at 350.814 kb on + strand, within CSW01_15900 at 350.814 kb on + strand, within CSW01_15900 at 350.822 kb on - strand, within CSW01_15900 at 350.831 kb on + strand at 350.844 kb on - strand at 350.889 kb on - strand, within CSW01_15905 at 351.089 kb on - strand, within CSW01_15910 at 351.123 kb on - strand, within CSW01_15910 at 351.133 kb on - strand, within CSW01_15910 at 351.135 kb on - strand, within CSW01_15910 at 351.273 kb on + strand, within CSW01_15910 at 351.278 kb on + strand, within CSW01_15910 at 351.333 kb on + strand, within CSW01_15910 at 351.333 kb on - strand, within CSW01_15910 at 351.439 kb on - strand, within CSW01_15910 at 351.496 kb on - strand, within CSW01_15910 at 351.675 kb on + strand at 351.703 kb on - strand at 351.703 kb on - strand at 351.703 kb on - strand at 351.730 kb on - strand at 351.840 kb on - strand at 351.849 kb on + strand at 351.849 kb on + strand at 351.854 kb on + strand at 351.856 kb on + strand at 351.857 kb on - strand at 351.857 kb on - strand at 351.857 kb on - strand at 351.857 kb on - strand at 351.864 kb on - strand at 351.864 kb on - strand at 351.866 kb on + strand at 351.874 kb on - strand at 352.044 kb on - strand, within CSW01_15915 at 352.050 kb on + strand, within CSW01_15915 at 352.077 kb on + strand, within CSW01_15915 at 352.077 kb on + strand, within CSW01_15915 at 352.091 kb on - strand, within CSW01_15915 at 352.177 kb on + strand, within CSW01_15915 at 352.185 kb on - strand, within CSW01_15915 at 352.308 kb on + strand, within CSW01_15915 at 352.318 kb on + strand, within CSW01_15915 at 352.321 kb on - strand, within CSW01_15915 at 352.361 kb on - strand, within CSW01_15915 at 352.487 kb on + strand, within CSW01_15915 at 352.487 kb on + strand, within CSW01_15915 at 352.496 kb on + strand, within CSW01_15915 at 352.506 kb on - strand, within CSW01_15915 at 352.589 kb on - strand, within CSW01_15915
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 350,053 + CSW01_15895 0.53 +0.2 350,053 + CSW01_15895 0.53 -0.5 350,068 - CSW01_15895 0.55 -0.1 350,073 + CSW01_15895 0.56 -2.9 350,198 - CSW01_15895 0.74 +0.2 350,220 + CSW01_15895 0.77 +0.3 350,302 + CSW01_15895 0.89 -0.4 350,312 + +1.7 350,382 + -1.8 350,382 + +1.4 350,390 - +0.3 350,404 - -3.7 350,434 + -3.5 350,442 - -1.5 350,473 + +1.1 350,512 + +1.1 350,652 + CSW01_15900 0.24 -0.3 350,732 - CSW01_15900 0.54 +0.5 350,737 + CSW01_15900 0.55 +0.7 350,737 + CSW01_15900 0.55 -2.8 350,737 + CSW01_15900 0.55 -2.9 350,745 + CSW01_15900 0.58 -0.0 350,812 - CSW01_15900 0.84 +1.0 350,814 + CSW01_15900 0.84 -0.0 350,814 + CSW01_15900 0.84 -1.1 350,822 - CSW01_15900 0.87 +0.6 350,831 + +0.9 350,844 - -2.2 350,889 - CSW01_15905 0.32 -1.5 351,089 - CSW01_15910 0.13 -0.6 351,123 - CSW01_15910 0.19 -1.2 351,133 - CSW01_15910 0.20 -0.9 351,135 - CSW01_15910 0.21 -0.4 351,273 + CSW01_15910 0.44 +1.2 351,278 + CSW01_15910 0.45 -0.9 351,333 + CSW01_15910 0.54 -2.0 351,333 - CSW01_15910 0.54 -1.0 351,439 - CSW01_15910 0.71 -0.3 351,496 - CSW01_15910 0.81 -2.0 351,675 + -1.2 351,703 - +1.4 351,703 - -2.2 351,703 - +0.5 351,730 - +1.0 351,840 - -0.6 351,849 + -2.7 351,849 + +1.3 351,854 + +0.0 351,856 + -0.9 351,857 - -1.4 351,857 - -0.0 351,857 - -1.4 351,857 - +1.0 351,864 - +0.9 351,864 - -1.9 351,866 + -0.5 351,874 - +0.3 352,044 - CSW01_15915 0.16 -1.1 352,050 + CSW01_15915 0.17 +1.3 352,077 + CSW01_15915 0.20 +0.6 352,077 + CSW01_15915 0.20 +1.6 352,091 - CSW01_15915 0.21 -1.0 352,177 + CSW01_15915 0.31 -2.7 352,185 - CSW01_15915 0.32 +0.1 352,308 + CSW01_15915 0.45 -2.6 352,318 + CSW01_15915 0.46 +0.4 352,321 - CSW01_15915 0.46 -0.7 352,361 - CSW01_15915 0.50 +0.2 352,487 + CSW01_15915 0.64 +1.1 352,487 + CSW01_15915 0.64 -2.6 352,496 + CSW01_15915 0.65 +0.4 352,506 - CSW01_15915 0.66 +2.0 352,589 - CSW01_15915 0.75 +0.7
Or see this region's nucleotide sequence