Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15730

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15720 and CSW01_15725 overlap by 5 nucleotidesCSW01_15725 and CSW01_15730 are separated by 73 nucleotidesCSW01_15730 and CSW01_15735 are separated by 272 nucleotidesCSW01_15735 and CSW01_15740 are separated by 267 nucleotides CSW01_15720: CSW01_15720 - LD-carboxypeptidase, at 334,211 to 335,215 _15720 CSW01_15725: CSW01_15725 - hypothetical protein, at 335,211 to 335,294 _15725 CSW01_15730: CSW01_15730 - VOC family protein, at 335,368 to 335,727 _15730 CSW01_15735: CSW01_15735 - DUF3709 domain-containing protein, at 336,000 to 336,233 _15735 CSW01_15740: CSW01_15740 - hypothetical protein, at 336,501 to 337,007 _15740 Position (kb) 335 336Strain fitness (log2 ratio) -2 -1 0 1at 335.503 kb on + strand, within CSW01_15730at 336.409 kb on + strandat 336.488 kb on - strandat 336.614 kb on + strand, within CSW01_15740at 336.630 kb on + strand, within CSW01_15740at 336.685 kb on + strand, within CSW01_15740

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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335,503 + CSW01_15730 0.38 -0.9
336,409 + +0.4
336,488 - +0.3
336,614 + CSW01_15740 0.22 -1.3
336,630 + CSW01_15740 0.25 -0.6
336,685 + CSW01_15740 0.36 -2.6

Or see this region's nucleotide sequence