Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15700 and CSW01_15705 overlap by 4 nucleotides CSW01_15705 and CSW01_15710 overlap by 11 nucleotides CSW01_15710 and CSW01_15715 are separated by 60 nucleotides CSW01_15715 and CSW01_15720 are separated by 215 nucleotides CSW01_15720 and CSW01_15725 overlap by 5 nucleotides CSW01_15725 and CSW01_15730 are separated by 73 nucleotides CSW01_15730 and CSW01_15735 are separated by 272 nucleotides
CSW01_15700: CSW01_15700 - hypothetical protein, at 332,715 to 333,521
_15700
CSW01_15705: CSW01_15705 - DUF3265 domain-containing protein, at 333,518 to 333,634
_15705
CSW01_15710: CSW01_15710 - general secretion pathway protein GspI, at 333,624 to 333,752
_15710
CSW01_15715: CSW01_15715 - DUF645 domain-containing protein, at 333,813 to 333,995
_15715
CSW01_15720: CSW01_15720 - LD-carboxypeptidase, at 334,211 to 335,215
_15720
CSW01_15725: CSW01_15725 - hypothetical protein, at 335,211 to 335,294
_15725
CSW01_15730: CSW01_15730 - VOC family protein, at 335,368 to 335,727
_15730
CSW01_15735: CSW01_15735 - DUF3709 domain-containing protein, at 336,000 to 336,233
_15735
Position (kb) 334
335
336 Strain fitness (log2 ratio) -2
-1
0
1 at 333.213 kb on - strand, within CSW01_15700 at 333.359 kb on - strand, within CSW01_15700 at 333.385 kb on + strand, within CSW01_15700 at 333.385 kb on + strand, within CSW01_15700 at 333.385 kb on + strand, within CSW01_15700 at 333.385 kb on + strand, within CSW01_15700 at 333.385 kb on + strand, within CSW01_15700 at 333.385 kb on + strand, within CSW01_15700 at 333.385 kb on + strand, within CSW01_15700 at 333.385 kb on + strand, within CSW01_15700 at 333.393 kb on - strand, within CSW01_15700 at 333.470 kb on + strand at 333.478 kb on - strand at 333.485 kb on + strand at 333.486 kb on + strand at 333.486 kb on + strand at 333.501 kb on + strand at 333.540 kb on - strand, within CSW01_15705 at 333.601 kb on - strand, within CSW01_15705 at 334.227 kb on - strand at 335.503 kb on + strand, within CSW01_15730
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 333,213 - CSW01_15700 0.62 -2.0 333,359 - CSW01_15700 0.80 -1.1 333,385 + CSW01_15700 0.83 -0.2 333,385 + CSW01_15700 0.83 -1.1 333,385 + CSW01_15700 0.83 +0.1 333,385 + CSW01_15700 0.83 -0.7 333,385 + CSW01_15700 0.83 +0.1 333,385 + CSW01_15700 0.83 +0.1 333,385 + CSW01_15700 0.83 -0.1 333,385 + CSW01_15700 0.83 -0.6 333,393 - CSW01_15700 0.84 +0.3 333,470 + -0.5 333,478 - -1.2 333,485 + -0.7 333,486 + +1.0 333,486 + +0.3 333,501 + +0.9 333,540 - CSW01_15705 0.19 -1.1 333,601 - CSW01_15705 0.71 -0.4 334,227 - -2.1 335,503 + CSW01_15730 0.38 -0.9
Or see this region's nucleotide sequence