Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14775

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14760 and CSW01_14765 overlap by 1 nucleotidesCSW01_14765 and CSW01_14770 overlap by 41 nucleotidesCSW01_14770 and CSW01_14775 overlap by 4 nucleotidesCSW01_14775 and CSW01_14780 overlap by 4 nucleotidesCSW01_14780 and CSW01_14785 overlap by 1 nucleotides CSW01_14760: CSW01_14760 - Na+/H+ antiporter subunit G, at 170,046 to 170,369 _14760 CSW01_14765: CSW01_14765 - cation:proton antiporter, at 170,369 to 170,680 _14765 CSW01_14770: CSW01_14770 - sodium:proton antiporter, at 170,640 to 171,116 _14770 CSW01_14775: CSW01_14775 - Na+/H+ antiporter subunit D, at 171,113 to 172,609 _14775 CSW01_14780: CSW01_14780 - cation:proton antiporter, at 172,606 to 172,959 _14780 CSW01_14785: CSW01_14785 - proton-conducting membrane transporter, at 172,959 to 175,634 _14785 Position (kb) 171 172 173Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 170.116 kb on + strand, within CSW01_14760at 170.116 kb on + strand, within CSW01_14760at 170.116 kb on + strand, within CSW01_14760at 170.165 kb on + strand, within CSW01_14760at 170.170 kb on + strand, within CSW01_14760at 170.178 kb on - strand, within CSW01_14760at 170.203 kb on + strand, within CSW01_14760at 170.203 kb on + strand, within CSW01_14760at 170.221 kb on + strand, within CSW01_14760at 170.226 kb on + strand, within CSW01_14760at 170.435 kb on + strand, within CSW01_14765at 170.435 kb on + strand, within CSW01_14765at 170.435 kb on + strand, within CSW01_14765at 170.441 kb on + strand, within CSW01_14765at 170.443 kb on - strand, within CSW01_14765at 170.443 kb on - strand, within CSW01_14765at 170.449 kb on - strand, within CSW01_14765at 170.558 kb on + strand, within CSW01_14765at 170.558 kb on + strand, within CSW01_14765at 170.558 kb on + strand, within CSW01_14765at 170.558 kb on + strand, within CSW01_14765at 170.566 kb on - strand, within CSW01_14765at 170.566 kb on - strand, within CSW01_14765at 170.566 kb on - strand, within CSW01_14765at 170.566 kb on - strand, within CSW01_14765at 170.581 kb on - strand, within CSW01_14765at 170.640 kb on - strandat 170.713 kb on + strand, within CSW01_14770at 170.713 kb on + strand, within CSW01_14770at 170.723 kb on - strand, within CSW01_14770at 170.807 kb on - strand, within CSW01_14770at 170.859 kb on - strand, within CSW01_14770at 170.870 kb on + strand, within CSW01_14770at 170.898 kb on - strand, within CSW01_14770at 171.069 kb on - strandat 171.105 kb on + strandat 171.125 kb on + strandat 171.187 kb on - strandat 171.222 kb on + strandat 171.232 kb on - strandat 171.232 kb on - strandat 171.268 kb on + strand, within CSW01_14775at 171.372 kb on - strand, within CSW01_14775at 171.398 kb on - strand, within CSW01_14775at 171.454 kb on + strand, within CSW01_14775at 171.481 kb on - strand, within CSW01_14775at 171.501 kb on - strand, within CSW01_14775at 171.536 kb on - strand, within CSW01_14775at 171.644 kb on + strand, within CSW01_14775at 171.746 kb on + strand, within CSW01_14775at 171.754 kb on - strand, within CSW01_14775at 171.812 kb on - strand, within CSW01_14775at 171.828 kb on + strand, within CSW01_14775at 171.905 kb on + strand, within CSW01_14775at 171.971 kb on + strand, within CSW01_14775at 171.982 kb on - strand, within CSW01_14775at 171.993 kb on + strand, within CSW01_14775at 172.028 kb on + strand, within CSW01_14775at 172.051 kb on - strand, within CSW01_14775at 172.062 kb on + strand, within CSW01_14775at 172.062 kb on + strand, within CSW01_14775at 172.070 kb on - strand, within CSW01_14775at 172.213 kb on - strand, within CSW01_14775at 172.243 kb on + strand, within CSW01_14775at 172.253 kb on + strand, within CSW01_14775at 172.256 kb on - strand, within CSW01_14775at 172.265 kb on + strand, within CSW01_14775at 172.281 kb on - strand, within CSW01_14775at 172.356 kb on + strand, within CSW01_14775at 172.423 kb on - strand, within CSW01_14775at 172.434 kb on - strand, within CSW01_14775at 172.507 kb on + strandat 172.574 kb on + strandat 172.589 kb on + strandat 172.597 kb on - strandat 172.597 kb on - strandat 172.617 kb on + strandat 172.632 kb on + strandat 172.771 kb on + strand, within CSW01_14780at 172.804 kb on + strand, within CSW01_14780at 172.804 kb on + strand, within CSW01_14780at 172.845 kb on + strand, within CSW01_14780at 172.868 kb on - strand, within CSW01_14780at 172.997 kb on + strandat 173.000 kb on - strandat 173.000 kb on - strandat 173.100 kb on - strandat 173.131 kb on - strandat 173.150 kb on + strandat 173.164 kb on + strandat 173.172 kb on + strandat 173.180 kb on - strandat 173.219 kb on + strandat 173.224 kb on + strandat 173.264 kb on - strand, within CSW01_14785at 173.285 kb on + strand, within CSW01_14785at 173.293 kb on - strand, within CSW01_14785at 173.298 kb on - strand, within CSW01_14785at 173.309 kb on + strand, within CSW01_14785at 173.320 kb on + strand, within CSW01_14785at 173.330 kb on + strand, within CSW01_14785at 173.557 kb on + strand, within CSW01_14785at 173.557 kb on + strand, within CSW01_14785at 173.570 kb on + strand, within CSW01_14785at 173.570 kb on + strand, within CSW01_14785at 173.570 kb on + strand, within CSW01_14785at 173.570 kb on + strand, within CSW01_14785at 173.570 kb on + strand, within CSW01_14785at 173.578 kb on - strand, within CSW01_14785at 173.578 kb on - strand, within CSW01_14785at 173.578 kb on - strand, within CSW01_14785at 173.578 kb on - strand, within CSW01_14785at 173.578 kb on - strand, within CSW01_14785at 173.578 kb on - strand, within CSW01_14785at 173.609 kb on - strand, within CSW01_14785

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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170,116 + CSW01_14760 0.22 +1.0
170,116 + CSW01_14760 0.22 +0.5
170,116 + CSW01_14760 0.22 +0.3
170,165 + CSW01_14760 0.37 -1.6
170,170 + CSW01_14760 0.38 -2.4
170,178 - CSW01_14760 0.41 +0.1
170,203 + CSW01_14760 0.48 +0.6
170,203 + CSW01_14760 0.48 +0.3
170,221 + CSW01_14760 0.54 -1.4
170,226 + CSW01_14760 0.56 +0.0
170,435 + CSW01_14765 0.21 -0.9
170,435 + CSW01_14765 0.21 +0.5
170,435 + CSW01_14765 0.21 +1.9
170,441 + CSW01_14765 0.23 +1.2
170,443 - CSW01_14765 0.24 -1.6
170,443 - CSW01_14765 0.24 +1.5
170,449 - CSW01_14765 0.26 -0.7
170,558 + CSW01_14765 0.61 -1.6
170,558 + CSW01_14765 0.61 +2.8
170,558 + CSW01_14765 0.61 +1.0
170,558 + CSW01_14765 0.61 -0.8
170,566 - CSW01_14765 0.63 -1.1
170,566 - CSW01_14765 0.63 -1.4
170,566 - CSW01_14765 0.63 -2.3
170,566 - CSW01_14765 0.63 +0.4
170,581 - CSW01_14765 0.68 -1.6
170,640 - -1.4
170,713 + CSW01_14770 0.15 +0.7
170,713 + CSW01_14770 0.15 -0.0
170,723 - CSW01_14770 0.17 +0.6
170,807 - CSW01_14770 0.35 -1.4
170,859 - CSW01_14770 0.46 +0.2
170,870 + CSW01_14770 0.48 -3.8
170,898 - CSW01_14770 0.54 +0.8
171,069 - +0.8
171,105 + -0.5
171,125 + -2.4
171,187 - -1.0
171,222 + -0.2
171,232 - +2.7
171,232 - -0.8
171,268 + CSW01_14775 0.10 -0.6
171,372 - CSW01_14775 0.17 +0.5
171,398 - CSW01_14775 0.19 -0.3
171,454 + CSW01_14775 0.23 -2.3
171,481 - CSW01_14775 0.25 -0.2
171,501 - CSW01_14775 0.26 -3.2
171,536 - CSW01_14775 0.28 -1.9
171,644 + CSW01_14775 0.35 -2.6
171,746 + CSW01_14775 0.42 +1.4
171,754 - CSW01_14775 0.43 +0.2
171,812 - CSW01_14775 0.47 -0.8
171,828 + CSW01_14775 0.48 -3.6
171,905 + CSW01_14775 0.53 -0.3
171,971 + CSW01_14775 0.57 +0.6
171,982 - CSW01_14775 0.58 -3.8
171,993 + CSW01_14775 0.59 -3.1
172,028 + CSW01_14775 0.61 -2.1
172,051 - CSW01_14775 0.63 +0.3
172,062 + CSW01_14775 0.63 -1.4
172,062 + CSW01_14775 0.63 -1.6
172,070 - CSW01_14775 0.64 -0.5
172,213 - CSW01_14775 0.73 -0.9
172,243 + CSW01_14775 0.75 -2.3
172,253 + CSW01_14775 0.76 -1.1
172,256 - CSW01_14775 0.76 -3.6
172,265 + CSW01_14775 0.77 -3.0
172,281 - CSW01_14775 0.78 -0.1
172,356 + CSW01_14775 0.83 -0.2
172,423 - CSW01_14775 0.88 -0.1
172,434 - CSW01_14775 0.88 -1.3
172,507 + +0.4
172,574 + -3.8
172,589 + +1.0
172,597 - -0.4
172,597 - -0.3
172,617 + -2.5
172,632 + -0.2
172,771 + CSW01_14780 0.47 +0.8
172,804 + CSW01_14780 0.56 +0.8
172,804 + CSW01_14780 0.56 +0.7
172,845 + CSW01_14780 0.68 +0.7
172,868 - CSW01_14780 0.74 -2.4
172,997 + -3.2
173,000 - +1.7
173,000 - -0.9
173,100 - -1.4
173,131 - +1.6
173,150 + -1.8
173,164 + +1.6
173,172 + -0.1
173,180 - -0.7
173,219 + -1.4
173,224 + -3.0
173,264 - CSW01_14785 0.11 -1.4
173,285 + CSW01_14785 0.12 +0.2
173,293 - CSW01_14785 0.12 +0.0
173,298 - CSW01_14785 0.13 -1.1
173,309 + CSW01_14785 0.13 +0.9
173,320 + CSW01_14785 0.13 +0.7
173,330 + CSW01_14785 0.14 -0.0
173,557 + CSW01_14785 0.22 -1.1
173,557 + CSW01_14785 0.22 +1.0
173,570 + CSW01_14785 0.23 +1.0
173,570 + CSW01_14785 0.23 -1.1
173,570 + CSW01_14785 0.23 -1.8
173,570 + CSW01_14785 0.23 -1.5
173,570 + CSW01_14785 0.23 -0.2
173,578 - CSW01_14785 0.23 -0.3
173,578 - CSW01_14785 0.23 +0.2
173,578 - CSW01_14785 0.23 -0.5
173,578 - CSW01_14785 0.23 +0.4
173,578 - CSW01_14785 0.23 -1.5
173,578 - CSW01_14785 0.23 -0.4
173,609 - CSW01_14785 0.24 +0.7

Or see this region's nucleotide sequence