Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14715 and CSW01_14720 are separated by 289 nucleotides CSW01_14720 and CSW01_14725 are separated by 65 nucleotides CSW01_14725 and CSW01_14730 are separated by 125 nucleotides
CSW01_14715: CSW01_14715 - sensor histidine kinase, at 155,192 to 157,246
_14715
CSW01_14720: CSW01_14720 - sigma-54-dependent Fis family transcriptional regulator, at 157,536 to 158,888
_14720
CSW01_14725: CSW01_14725 - hypothetical protein, at 158,954 to 159,064
_14725
CSW01_14730: CSW01_14730 - C4-dicarboxylate ABC transporter substrate-binding protein, at 159,190 to 160,197
_14730
Position (kb) 157
158
159 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 156.551 kb on - strand, within CSW01_14715 at 156.553 kb on + strand, within CSW01_14715 at 156.561 kb on - strand, within CSW01_14715 at 156.633 kb on - strand, within CSW01_14715 at 156.724 kb on + strand, within CSW01_14715 at 156.871 kb on - strand, within CSW01_14715 at 156.944 kb on + strand, within CSW01_14715 at 156.951 kb on + strand, within CSW01_14715 at 157.020 kb on + strand, within CSW01_14715 at 157.028 kb on - strand, within CSW01_14715 at 157.081 kb on + strand at 157.082 kb on + strand at 157.093 kb on + strand at 157.141 kb on + strand at 157.144 kb on - strand at 157.190 kb on - strand at 157.190 kb on - strand at 157.290 kb on - strand at 157.326 kb on + strand at 157.326 kb on + strand at 157.334 kb on - strand at 157.342 kb on - strand at 157.412 kb on - strand at 157.567 kb on - strand at 157.673 kb on + strand, within CSW01_14720 at 157.701 kb on - strand, within CSW01_14720 at 157.704 kb on - strand, within CSW01_14720 at 157.704 kb on - strand, within CSW01_14720 at 157.714 kb on - strand, within CSW01_14720 at 157.876 kb on - strand, within CSW01_14720 at 157.894 kb on + strand, within CSW01_14720 at 157.906 kb on - strand, within CSW01_14720 at 157.915 kb on + strand, within CSW01_14720 at 157.954 kb on + strand, within CSW01_14720 at 157.979 kb on + strand, within CSW01_14720 at 157.987 kb on - strand, within CSW01_14720 at 158.123 kb on + strand, within CSW01_14720 at 158.177 kb on + strand, within CSW01_14720 at 158.221 kb on + strand, within CSW01_14720 at 158.238 kb on - strand, within CSW01_14720 at 158.456 kb on + strand, within CSW01_14720 at 158.456 kb on + strand, within CSW01_14720 at 158.456 kb on + strand, within CSW01_14720 at 158.456 kb on + strand, within CSW01_14720 at 158.456 kb on + strand, within CSW01_14720 at 158.456 kb on + strand, within CSW01_14720 at 158.464 kb on - strand, within CSW01_14720 at 158.464 kb on - strand, within CSW01_14720 at 158.464 kb on - strand, within CSW01_14720 at 158.464 kb on - strand, within CSW01_14720 at 158.464 kb on - strand, within CSW01_14720 at 158.464 kb on - strand, within CSW01_14720 at 158.467 kb on - strand, within CSW01_14720 at 158.513 kb on - strand, within CSW01_14720 at 158.549 kb on + strand, within CSW01_14720 at 158.617 kb on - strand, within CSW01_14720 at 158.624 kb on + strand, within CSW01_14720 at 158.632 kb on - strand, within CSW01_14720 at 158.632 kb on - strand, within CSW01_14720 at 158.650 kb on + strand, within CSW01_14720 at 158.706 kb on + strand, within CSW01_14720 at 158.714 kb on - strand, within CSW01_14720 at 159.256 kb on + strand at 159.263 kb on - strand at 159.265 kb on + strand at 159.278 kb on + strand at 159.339 kb on - strand, within CSW01_14730 at 159.340 kb on + strand, within CSW01_14730 at 159.340 kb on + strand, within CSW01_14730 at 159.431 kb on - strand, within CSW01_14730 at 159.463 kb on + strand, within CSW01_14730 at 159.475 kb on + strand, within CSW01_14730 at 159.475 kb on + strand, within CSW01_14730 at 159.506 kb on - strand, within CSW01_14730 at 159.533 kb on + strand, within CSW01_14730 at 159.541 kb on - strand, within CSW01_14730 at 159.541 kb on - strand, within CSW01_14730 at 159.556 kb on + strand, within CSW01_14730 at 159.559 kb on - strand, within CSW01_14730 at 159.560 kb on + strand, within CSW01_14730 at 159.718 kb on - strand, within CSW01_14730 at 159.743 kb on + strand, within CSW01_14730 at 159.751 kb on - strand, within CSW01_14730 at 159.751 kb on - strand, within CSW01_14730 at 159.885 kb on - strand, within CSW01_14730
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 156,551 - CSW01_14715 0.66 -0.6 156,553 + CSW01_14715 0.66 +1.3 156,561 - CSW01_14715 0.67 -0.1 156,633 - CSW01_14715 0.70 -1.1 156,724 + CSW01_14715 0.75 -1.4 156,871 - CSW01_14715 0.82 +1.0 156,944 + CSW01_14715 0.85 +0.8 156,951 + CSW01_14715 0.86 -4.1 157,020 + CSW01_14715 0.89 +1.5 157,028 - CSW01_14715 0.89 +1.1 157,081 + -0.2 157,082 + -1.4 157,093 + -3.1 157,141 + +1.7 157,144 - -3.5 157,190 - +0.3 157,190 - -0.8 157,290 - +0.2 157,326 + +1.6 157,326 + +0.3 157,334 - -4.0 157,342 - -2.5 157,412 - -0.4 157,567 - +0.2 157,673 + CSW01_14720 0.10 +1.5 157,701 - CSW01_14720 0.12 +0.8 157,704 - CSW01_14720 0.12 +0.2 157,704 - CSW01_14720 0.12 -0.3 157,714 - CSW01_14720 0.13 +0.4 157,876 - CSW01_14720 0.25 +1.3 157,894 + CSW01_14720 0.26 -0.8 157,906 - CSW01_14720 0.27 +0.8 157,915 + CSW01_14720 0.28 -0.5 157,954 + CSW01_14720 0.31 +1.1 157,979 + CSW01_14720 0.33 +1.1 157,987 - CSW01_14720 0.33 -0.7 158,123 + CSW01_14720 0.43 +2.9 158,177 + CSW01_14720 0.47 +1.2 158,221 + CSW01_14720 0.51 +0.4 158,238 - CSW01_14720 0.52 -2.3 158,456 + CSW01_14720 0.68 +1.0 158,456 + CSW01_14720 0.68 -1.4 158,456 + CSW01_14720 0.68 -0.7 158,456 + CSW01_14720 0.68 -0.3 158,456 + CSW01_14720 0.68 +1.1 158,456 + CSW01_14720 0.68 +0.9 158,464 - CSW01_14720 0.69 -1.4 158,464 - CSW01_14720 0.69 -0.1 158,464 - CSW01_14720 0.69 -1.0 158,464 - CSW01_14720 0.69 +0.0 158,464 - CSW01_14720 0.69 -0.7 158,464 - CSW01_14720 0.69 +0.7 158,467 - CSW01_14720 0.69 +0.2 158,513 - CSW01_14720 0.72 +0.1 158,549 + CSW01_14720 0.75 +0.3 158,617 - CSW01_14720 0.80 -1.8 158,624 + CSW01_14720 0.80 -1.7 158,632 - CSW01_14720 0.81 -0.8 158,632 - CSW01_14720 0.81 -1.9 158,650 + CSW01_14720 0.82 -0.1 158,706 + CSW01_14720 0.86 -0.2 158,714 - CSW01_14720 0.87 +0.5 159,256 + +0.9 159,263 - -2.5 159,265 + -2.4 159,278 + +1.0 159,339 - CSW01_14730 0.15 -2.0 159,340 + CSW01_14730 0.15 -0.7 159,340 + CSW01_14730 0.15 +1.4 159,431 - CSW01_14730 0.24 +1.0 159,463 + CSW01_14730 0.27 -2.2 159,475 + CSW01_14730 0.28 +0.3 159,475 + CSW01_14730 0.28 +0.7 159,506 - CSW01_14730 0.31 +1.0 159,533 + CSW01_14730 0.34 -3.2 159,541 - CSW01_14730 0.35 -0.3 159,541 - CSW01_14730 0.35 +1.7 159,556 + CSW01_14730 0.36 -0.3 159,559 - CSW01_14730 0.37 -0.2 159,560 + CSW01_14730 0.37 +0.5 159,718 - CSW01_14730 0.52 -1.6 159,743 + CSW01_14730 0.55 -3.5 159,751 - CSW01_14730 0.56 -2.2 159,751 - CSW01_14730 0.56 +0.4 159,885 - CSW01_14730 0.69 -0.7
Or see this region's nucleotide sequence