Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14460

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14445 and CSW01_14450 are separated by 100 nucleotidesCSW01_14450 and CSW01_14455 are separated by 73 nucleotidesCSW01_14455 and CSW01_14460 are separated by 165 nucleotidesCSW01_14460 and CSW01_14465 are separated by 255 nucleotides CSW01_14445: CSW01_14445 - MFS transporter, at 95,458 to 96,660 _14445 CSW01_14450: CSW01_14450 - hypothetical protein, at 96,761 to 97,141 _14450 CSW01_14455: CSW01_14455 - hypothetical protein, at 97,215 to 97,379 _14455 CSW01_14460: CSW01_14460 - dicarboxylate/amino acid:cation symporter, at 97,545 to 98,818 _14460 CSW01_14465: CSW01_14465 - EamA/RhaT family transporter, at 99,074 to 99,967 _14465 Position (kb) 97 98 99Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 96.551 kb on - strandat 96.562 kb on + strandat 96.569 kb on + strandat 96.597 kb on - strandat 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.863 kb on - strand, within CSW01_14450at 96.863 kb on - strand, within CSW01_14450at 96.863 kb on - strand, within CSW01_14450at 96.863 kb on - strand, within CSW01_14450at 96.863 kb on - strand, within CSW01_14450at 96.863 kb on - strand, within CSW01_14450at 96.945 kb on - strand, within CSW01_14450at 96.986 kb on - strand, within CSW01_14450at 97.007 kb on + strand, within CSW01_14450at 97.198 kb on + strandat 97.250 kb on - strand, within CSW01_14455at 97.250 kb on - strand, within CSW01_14455at 97.275 kb on + strand, within CSW01_14455at 97.275 kb on + strand, within CSW01_14455at 97.584 kb on - strandat 97.603 kb on + strandat 97.627 kb on - strandat 97.629 kb on + strandat 97.631 kb on + strandat 97.652 kb on - strandat 97.652 kb on - strandat 97.667 kb on + strandat 97.674 kb on + strand, within CSW01_14460at 97.675 kb on - strand, within CSW01_14460at 97.682 kb on - strand, within CSW01_14460at 97.682 kb on - strand, within CSW01_14460at 97.701 kb on + strand, within CSW01_14460at 97.730 kb on - strand, within CSW01_14460at 97.735 kb on + strand, within CSW01_14460at 97.820 kb on - strand, within CSW01_14460at 97.837 kb on - strand, within CSW01_14460at 97.894 kb on + strand, within CSW01_14460at 97.894 kb on + strand, within CSW01_14460at 97.902 kb on - strand, within CSW01_14460at 97.902 kb on - strand, within CSW01_14460at 98.059 kb on - strand, within CSW01_14460at 98.080 kb on + strand, within CSW01_14460at 98.088 kb on - strand, within CSW01_14460at 98.267 kb on + strand, within CSW01_14460at 98.269 kb on + strand, within CSW01_14460at 98.349 kb on + strand, within CSW01_14460at 98.349 kb on + strand, within CSW01_14460at 98.357 kb on - strand, within CSW01_14460at 98.357 kb on - strand, within CSW01_14460at 98.357 kb on - strand, within CSW01_14460at 98.357 kb on - strand, within CSW01_14460at 98.357 kb on - strand, within CSW01_14460at 98.494 kb on - strand, within CSW01_14460at 98.497 kb on + strand, within CSW01_14460at 98.497 kb on + strand, within CSW01_14460at 98.505 kb on - strand, within CSW01_14460at 98.505 kb on - strand, within CSW01_14460at 98.773 kb on + strandat 98.774 kb on - strandat 98.781 kb on - strandat 98.816 kb on - strandat 98.818 kb on + strandat 99.071 kb on - strandat 99.162 kb on - strandat 99.181 kb on - strand, within CSW01_14465at 99.181 kb on - strand, within CSW01_14465at 99.215 kb on - strand, within CSW01_14465at 99.272 kb on - strand, within CSW01_14465at 99.299 kb on + strand, within CSW01_14465at 99.309 kb on + strand, within CSW01_14465at 99.391 kb on - strand, within CSW01_14465at 99.446 kb on + strand, within CSW01_14465at 99.446 kb on + strand, within CSW01_14465at 99.454 kb on - strand, within CSW01_14465at 99.454 kb on - strand, within CSW01_14465at 99.456 kb on - strand, within CSW01_14465at 99.528 kb on + strand, within CSW01_14465at 99.528 kb on + strand, within CSW01_14465at 99.530 kb on + strand, within CSW01_14465at 99.554 kb on - strand, within CSW01_14465at 99.627 kb on - strand, within CSW01_14465at 99.669 kb on + strand, within CSW01_14465at 99.697 kb on + strand, within CSW01_14465at 99.796 kb on + strand, within CSW01_14465at 99.814 kb on - strand, within CSW01_14465

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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96,551 - +0.2
96,562 + +2.3
96,569 + +1.0
96,597 - -0.5
96,855 + CSW01_14450 0.25 +1.1
96,855 + CSW01_14450 0.25 -0.7
96,855 + CSW01_14450 0.25 -1.7
96,855 + CSW01_14450 0.25 -0.7
96,855 + CSW01_14450 0.25 -0.1
96,855 + CSW01_14450 0.25 +0.4
96,855 + CSW01_14450 0.25 -0.0
96,855 + CSW01_14450 0.25 +0.9
96,855 + CSW01_14450 0.25 +0.3
96,855 + CSW01_14450 0.25 -1.6
96,855 + CSW01_14450 0.25 +0.6
96,855 + CSW01_14450 0.25 -0.4
96,863 - CSW01_14450 0.27 +0.4
96,863 - CSW01_14450 0.27 -0.0
96,863 - CSW01_14450 0.27 +0.4
96,863 - CSW01_14450 0.27 +0.4
96,863 - CSW01_14450 0.27 -0.1
96,863 - CSW01_14450 0.27 +0.3
96,945 - CSW01_14450 0.48 -1.6
96,986 - CSW01_14450 0.59 -2.3
97,007 + CSW01_14450 0.65 +1.0
97,198 + +0.9
97,250 - CSW01_14455 0.21 -0.3
97,250 - CSW01_14455 0.21 -3.6
97,275 + CSW01_14455 0.36 +0.1
97,275 + CSW01_14455 0.36 +1.8
97,584 - +0.6
97,603 + -1.7
97,627 - -2.0
97,629 + +0.5
97,631 + +0.2
97,652 - -2.7
97,652 - -0.5
97,667 + -1.0
97,674 + CSW01_14460 0.10 -2.6
97,675 - CSW01_14460 0.10 +0.1
97,682 - CSW01_14460 0.11 -0.4
97,682 - CSW01_14460 0.11 +0.5
97,701 + CSW01_14460 0.12 -0.9
97,730 - CSW01_14460 0.15 -2.1
97,735 + CSW01_14460 0.15 -4.3
97,820 - CSW01_14460 0.22 +1.1
97,837 - CSW01_14460 0.23 -0.6
97,894 + CSW01_14460 0.27 +2.0
97,894 + CSW01_14460 0.27 +0.3
97,902 - CSW01_14460 0.28 -2.1
97,902 - CSW01_14460 0.28 +1.7
98,059 - CSW01_14460 0.40 +1.2
98,080 + CSW01_14460 0.42 +0.6
98,088 - CSW01_14460 0.43 -0.4
98,267 + CSW01_14460 0.57 +1.5
98,269 + CSW01_14460 0.57 +0.6
98,349 + CSW01_14460 0.63 +2.0
98,349 + CSW01_14460 0.63 +1.2
98,357 - CSW01_14460 0.64 -0.9
98,357 - CSW01_14460 0.64 +0.0
98,357 - CSW01_14460 0.64 -1.0
98,357 - CSW01_14460 0.64 +0.7
98,357 - CSW01_14460 0.64 +1.5
98,494 - CSW01_14460 0.74 +0.5
98,497 + CSW01_14460 0.75 +0.2
98,497 + CSW01_14460 0.75 +0.0
98,505 - CSW01_14460 0.75 +0.3
98,505 - CSW01_14460 0.75 -0.8
98,773 + +0.9
98,774 - -1.8
98,781 - +1.0
98,816 - +0.7
98,818 + -0.1
99,071 - -0.8
99,162 - +2.5
99,181 - CSW01_14465 0.12 +0.8
99,181 - CSW01_14465 0.12 +1.1
99,215 - CSW01_14465 0.16 -3.3
99,272 - CSW01_14465 0.22 +0.2
99,299 + CSW01_14465 0.25 +0.7
99,309 + CSW01_14465 0.26 -0.1
99,391 - CSW01_14465 0.35 +0.5
99,446 + CSW01_14465 0.42 -1.5
99,446 + CSW01_14465 0.42 +0.0
99,454 - CSW01_14465 0.43 -0.8
99,454 - CSW01_14465 0.43 +0.8
99,456 - CSW01_14465 0.43 -0.5
99,528 + CSW01_14465 0.51 +0.2
99,528 + CSW01_14465 0.51 -0.8
99,530 + CSW01_14465 0.51 +0.2
99,554 - CSW01_14465 0.54 -3.0
99,627 - CSW01_14465 0.62 -1.4
99,669 + CSW01_14465 0.67 +0.5
99,697 + CSW01_14465 0.70 +0.3
99,796 + CSW01_14465 0.81 -1.0
99,814 - CSW01_14465 0.83 -0.7

Or see this region's nucleotide sequence