Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14225

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14220 and CSW01_14225 are separated by 187 nucleotidesCSW01_14225 and CSW01_14230 are separated by 53 nucleotides CSW01_14220: CSW01_14220 - HDOD domain-containing protein, at 42,213 to 43,085 _14220 CSW01_14225: CSW01_14225 - phosphatidylglycerophosphatase B, at 43,273 to 44,025 _14225 CSW01_14230: CSW01_14230 - serine/threonine transporter SstT, at 44,079 to 45,296 _14230 Position (kb) 43 44 45Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 42.297 kb on + strandat 42.369 kb on + strand, within CSW01_14220at 42.495 kb on + strand, within CSW01_14220at 42.549 kb on - strand, within CSW01_14220at 42.588 kb on + strand, within CSW01_14220at 42.592 kb on - strand, within CSW01_14220at 42.620 kb on - strand, within CSW01_14220at 42.628 kb on + strand, within CSW01_14220at 42.636 kb on - strand, within CSW01_14220at 42.670 kb on + strand, within CSW01_14220at 42.673 kb on - strand, within CSW01_14220at 42.988 kb on + strand, within CSW01_14220at 42.988 kb on + strand, within CSW01_14220at 42.988 kb on + strand, within CSW01_14220at 42.996 kb on - strand, within CSW01_14220at 42.996 kb on - strand, within CSW01_14220at 42.996 kb on - strand, within CSW01_14220at 43.005 kb on - strandat 43.018 kb on - strandat 43.059 kb on - strandat 43.068 kb on + strandat 43.239 kb on - strandat 43.263 kb on + strandat 43.263 kb on + strandat 43.271 kb on - strandat 43.271 kb on - strandat 43.322 kb on + strandat 43.515 kb on + strand, within CSW01_14225at 43.604 kb on + strand, within CSW01_14225at 43.612 kb on - strand, within CSW01_14225at 43.612 kb on - strand, within CSW01_14225at 43.635 kb on + strand, within CSW01_14225at 43.643 kb on - strand, within CSW01_14225at 43.681 kb on + strand, within CSW01_14225at 43.689 kb on - strand, within CSW01_14225at 43.689 kb on - strand, within CSW01_14225at 43.689 kb on - strand, within CSW01_14225at 43.689 kb on - strand, within CSW01_14225at 43.689 kb on - strand, within CSW01_14225at 43.894 kb on + strand, within CSW01_14225at 43.897 kb on - strand, within CSW01_14225at 43.965 kb on + strandat 43.973 kb on - strandat 43.973 kb on - strandat 44.101 kb on + strandat 44.107 kb on - strandat 44.114 kb on - strandat 44.142 kb on + strandat 44.142 kb on + strandat 44.142 kb on + strandat 44.142 kb on + strandat 44.142 kb on + strandat 44.150 kb on - strandat 44.150 kb on - strandat 44.150 kb on - strandat 44.150 kb on - strandat 44.163 kb on + strandat 44.189 kb on - strandat 44.276 kb on + strand, within CSW01_14230at 44.321 kb on + strand, within CSW01_14230at 44.358 kb on + strand, within CSW01_14230at 44.363 kb on - strand, within CSW01_14230at 44.373 kb on + strand, within CSW01_14230at 44.373 kb on + strand, within CSW01_14230at 44.381 kb on - strand, within CSW01_14230at 44.430 kb on + strand, within CSW01_14230at 44.430 kb on + strand, within CSW01_14230at 44.430 kb on + strand, within CSW01_14230at 44.434 kb on - strand, within CSW01_14230at 44.477 kb on + strand, within CSW01_14230at 44.477 kb on + strand, within CSW01_14230at 44.485 kb on - strand, within CSW01_14230at 44.485 kb on - strand, within CSW01_14230at 44.485 kb on - strand, within CSW01_14230at 44.817 kb on - strand, within CSW01_14230at 44.826 kb on + strand, within CSW01_14230at 44.826 kb on + strand, within CSW01_14230at 44.914 kb on + strand, within CSW01_14230at 44.914 kb on + strand, within CSW01_14230at 44.934 kb on + strand, within CSW01_14230at 44.972 kb on + strand, within CSW01_14230at 44.980 kb on - strand, within CSW01_14230at 45.012 kb on + strand, within CSW01_14230at 45.022 kb on + strand, within CSW01_14230at 45.022 kb on + strand, within CSW01_14230

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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42,297 + -1.0
42,369 + CSW01_14220 0.18 +1.5
42,495 + CSW01_14220 0.32 +1.0
42,549 - CSW01_14220 0.38 +0.0
42,588 + CSW01_14220 0.43 +0.8
42,592 - CSW01_14220 0.43 +0.1
42,620 - CSW01_14220 0.47 +0.6
42,628 + CSW01_14220 0.48 +0.2
42,636 - CSW01_14220 0.48 +2.2
42,670 + CSW01_14220 0.52 +1.1
42,673 - CSW01_14220 0.53 +0.1
42,988 + CSW01_14220 0.89 +1.0
42,988 + CSW01_14220 0.89 -0.0
42,988 + CSW01_14220 0.89 -2.0
42,996 - CSW01_14220 0.90 -3.4
42,996 - CSW01_14220 0.90 +1.9
42,996 - CSW01_14220 0.90 -1.2
43,005 - -0.2
43,018 - +0.4
43,059 - +0.5
43,068 + +1.0
43,239 - -4.1
43,263 + +1.0
43,263 + -0.7
43,271 - -1.7
43,271 - -2.3
43,322 + +0.4
43,515 + CSW01_14225 0.32 +0.1
43,604 + CSW01_14225 0.44 -1.5
43,612 - CSW01_14225 0.45 +0.5
43,612 - CSW01_14225 0.45 -3.7
43,635 + CSW01_14225 0.48 +0.1
43,643 - CSW01_14225 0.49 -2.8
43,681 + CSW01_14225 0.54 +1.4
43,689 - CSW01_14225 0.55 -0.1
43,689 - CSW01_14225 0.55 -1.6
43,689 - CSW01_14225 0.55 +0.6
43,689 - CSW01_14225 0.55 -3.1
43,689 - CSW01_14225 0.55 -0.9
43,894 + CSW01_14225 0.82 -0.0
43,897 - CSW01_14225 0.83 -0.5
43,965 + -0.1
43,973 - +0.1
43,973 - -1.6
44,101 + -2.2
44,107 - +0.8
44,114 - -0.5
44,142 + +0.4
44,142 + -0.3
44,142 + -0.7
44,142 + -0.4
44,142 + +0.8
44,150 - -2.7
44,150 - -2.0
44,150 - -0.1
44,150 - -3.6
44,163 + -0.1
44,189 - +0.5
44,276 + CSW01_14230 0.16 -1.7
44,321 + CSW01_14230 0.20 -2.5
44,358 + CSW01_14230 0.23 +1.2
44,363 - CSW01_14230 0.23 +1.4
44,373 + CSW01_14230 0.24 -2.3
44,373 + CSW01_14230 0.24 +1.2
44,381 - CSW01_14230 0.25 -0.6
44,430 + CSW01_14230 0.29 -1.6
44,430 + CSW01_14230 0.29 +0.2
44,430 + CSW01_14230 0.29 +1.3
44,434 - CSW01_14230 0.29 +0.7
44,477 + CSW01_14230 0.33 -2.7
44,477 + CSW01_14230 0.33 -1.1
44,485 - CSW01_14230 0.33 -0.7
44,485 - CSW01_14230 0.33 -0.1
44,485 - CSW01_14230 0.33 -0.5
44,817 - CSW01_14230 0.61 +0.3
44,826 + CSW01_14230 0.61 -1.1
44,826 + CSW01_14230 0.61 -1.6
44,914 + CSW01_14230 0.69 +0.7
44,914 + CSW01_14230 0.69 -0.0
44,934 + CSW01_14230 0.70 +0.4
44,972 + CSW01_14230 0.73 -2.0
44,980 - CSW01_14230 0.74 -2.5
45,012 + CSW01_14230 0.77 +1.1
45,022 + CSW01_14230 0.77 -2.6
45,022 + CSW01_14230 0.77 -0.2

Or see this region's nucleotide sequence