Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14125 and CSW01_14130 are separated by 133 nucleotides CSW01_14130 and CSW01_14135 are separated by 81 nucleotides CSW01_14135 and CSW01_14140 are separated by 127 nucleotides
CSW01_14125: CSW01_14125 - 1,4-alpha-glucan branching enzyme, at 17,196 to 19,385
_14125
CSW01_14130: CSW01_14130 - hypothetical protein, at 19,519 to 19,698
_14130
CSW01_14135: CSW01_14135 - type VI secretion system tube protein Hcp, at 19,780 to 20,298
_14135
CSW01_14140: CSW01_14140 - type VI secretion system tip protein VgrG, at 20,426 to 22,510
_14140
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 18.781 kb on + strand, within CSW01_14125 at 19.072 kb on + strand, within CSW01_14125 at 19.098 kb on + strand, within CSW01_14125 at 19.261 kb on - strand at 19.265 kb on + strand at 19.444 kb on + strand at 19.451 kb on - strand at 19.452 kb on - strand at 19.452 kb on - strand at 19.504 kb on - strand at 19.519 kb on - strand at 19.571 kb on - strand, within CSW01_14130 at 19.918 kb on + strand, within CSW01_14135 at 19.925 kb on - strand, within CSW01_14135 at 19.925 kb on - strand, within CSW01_14135 at 19.925 kb on - strand, within CSW01_14135 at 19.956 kb on - strand, within CSW01_14135 at 19.974 kb on - strand, within CSW01_14135 at 20.004 kb on - strand, within CSW01_14135 at 20.019 kb on + strand, within CSW01_14135 at 20.022 kb on + strand, within CSW01_14135 at 20.034 kb on + strand, within CSW01_14135 at 20.034 kb on + strand, within CSW01_14135 at 20.034 kb on + strand, within CSW01_14135 at 20.034 kb on + strand, within CSW01_14135 at 20.129 kb on - strand, within CSW01_14135 at 20.531 kb on + strand at 20.592 kb on + strand at 20.623 kb on + strand at 20.631 kb on - strand at 20.631 kb on - strand at 20.667 kb on + strand, within CSW01_14140 at 20.687 kb on - strand, within CSW01_14140 at 20.687 kb on - strand, within CSW01_14140 at 20.720 kb on - strand, within CSW01_14140 at 21.076 kb on - strand, within CSW01_14140 at 21.093 kb on - strand, within CSW01_14140 at 21.185 kb on - strand, within CSW01_14140
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 18,781 + CSW01_14125 0.72 -2.3 19,072 + CSW01_14125 0.86 +1.9 19,098 + CSW01_14125 0.87 +1.0 19,261 - -0.9 19,265 + +1.4 19,444 + +1.2 19,451 - +1.8 19,452 - +1.0 19,452 - +0.8 19,504 - +0.7 19,519 - +0.2 19,571 - CSW01_14130 0.29 +1.2 19,918 + CSW01_14135 0.27 +0.7 19,925 - CSW01_14135 0.28 -0.3 19,925 - CSW01_14135 0.28 +0.2 19,925 - CSW01_14135 0.28 +1.8 19,956 - CSW01_14135 0.34 +1.2 19,974 - CSW01_14135 0.37 -1.4 20,004 - CSW01_14135 0.43 -1.3 20,019 + CSW01_14135 0.46 -1.3 20,022 + CSW01_14135 0.47 -0.6 20,034 + CSW01_14135 0.49 -1.1 20,034 + CSW01_14135 0.49 +0.9 20,034 + CSW01_14135 0.49 +0.9 20,034 + CSW01_14135 0.49 -3.0 20,129 - CSW01_14135 0.67 +0.5 20,531 + -0.9 20,592 + +0.5 20,623 + -1.3 20,631 - -1.3 20,631 - -0.0 20,667 + CSW01_14140 0.12 +0.6 20,687 - CSW01_14140 0.13 -0.9 20,687 - CSW01_14140 0.13 -3.2 20,720 - CSW01_14140 0.14 -3.3 21,076 - CSW01_14140 0.31 -0.4 21,093 - CSW01_14140 0.32 -0.3 21,185 - CSW01_14140 0.36 +1.3
Or see this region's nucleotide sequence