Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14095 and CSW01_14100 are separated by 2 nucleotides CSW01_14100 and CSW01_14105 are separated by 80 nucleotides CSW01_14105 and CSW01_14110 are separated by 66 nucleotides
CSW01_14095: CSW01_14095 - methyl-accepting chemotaxis protein, at 6,624 to 8,285
_14095
CSW01_14100: CSW01_14100 - hypothetical protein, at 8,288 to 8,482
_14100
CSW01_14105: CSW01_14105 - hypothetical protein, at 8,563 to 8,919
_14105
CSW01_14110: CSW01_14110 - HTH-type transcriptional regulator MalT, at 8,986 to 11,751
_14110
Position (kb) 8
9 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 7.414 kb on + strand, within CSW01_14095 at 7.477 kb on - strand, within CSW01_14095 at 7.642 kb on + strand, within CSW01_14095 at 7.675 kb on - strand, within CSW01_14095 at 7.684 kb on + strand, within CSW01_14095 at 7.686 kb on + strand, within CSW01_14095 at 7.689 kb on - strand, within CSW01_14095 at 7.696 kb on + strand, within CSW01_14095 at 7.790 kb on + strand, within CSW01_14095 at 7.790 kb on + strand, within CSW01_14095 at 7.798 kb on - strand, within CSW01_14095 at 7.973 kb on - strand, within CSW01_14095 at 7.984 kb on - strand, within CSW01_14095 at 8.082 kb on - strand, within CSW01_14095 at 8.171 kb on + strand at 8.171 kb on + strand at 8.217 kb on + strand at 8.222 kb on + strand at 8.309 kb on + strand, within CSW01_14100 at 8.331 kb on - strand, within CSW01_14100 at 8.347 kb on - strand, within CSW01_14100 at 8.455 kb on + strand, within CSW01_14100 at 8.509 kb on + strand at 8.521 kb on + strand at 8.576 kb on - strand at 8.792 kb on - strand, within CSW01_14105 at 9.001 kb on - strand at 9.025 kb on - strand at 9.106 kb on - strand at 9.148 kb on - strand at 9.152 kb on - strand at 9.153 kb on - strand at 9.292 kb on - strand, within CSW01_14110 at 9.294 kb on + strand, within CSW01_14110 at 9.297 kb on - strand, within CSW01_14110 at 9.302 kb on + strand, within CSW01_14110 at 9.333 kb on - strand, within CSW01_14110 at 9.344 kb on + strand, within CSW01_14110 at 9.352 kb on - strand, within CSW01_14110 at 9.360 kb on + strand, within CSW01_14110
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 7,414 + CSW01_14095 0.48 -0.5 7,477 - CSW01_14095 0.51 -1.4 7,642 + CSW01_14095 0.61 -2.6 7,675 - CSW01_14095 0.63 -0.0 7,684 + CSW01_14095 0.64 +0.3 7,686 + CSW01_14095 0.64 +1.0 7,689 - CSW01_14095 0.64 -1.4 7,696 + CSW01_14095 0.65 -0.4 7,790 + CSW01_14095 0.70 +0.2 7,790 + CSW01_14095 0.70 +0.6 7,798 - CSW01_14095 0.71 +0.3 7,973 - CSW01_14095 0.81 -0.7 7,984 - CSW01_14095 0.82 -0.7 8,082 - CSW01_14095 0.88 +0.2 8,171 + -0.8 8,171 + -0.5 8,217 + -3.3 8,222 + -2.3 8,309 + CSW01_14100 0.11 +1.1 8,331 - CSW01_14100 0.22 -2.8 8,347 - CSW01_14100 0.30 +0.7 8,455 + CSW01_14100 0.86 -1.7 8,509 + +0.5 8,521 + +0.5 8,576 - +0.2 8,792 - CSW01_14105 0.64 -1.6 9,001 - +0.0 9,025 - +0.3 9,106 - +1.0 9,148 - +0.1 9,152 - +0.5 9,153 - +0.8 9,292 - CSW01_14110 0.11 +0.2 9,294 + CSW01_14110 0.11 -0.2 9,297 - CSW01_14110 0.11 +0.2 9,302 + CSW01_14110 0.11 +0.9 9,333 - CSW01_14110 0.13 -1.7 9,344 + CSW01_14110 0.13 +1.6 9,352 - CSW01_14110 0.13 +2.5 9,360 + CSW01_14110 0.14 -0.7
Or see this region's nucleotide sequence