Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13670

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_13665 and CSW01_13670 are separated by 107 nucleotidesCSW01_13670 and CSW01_13675 are separated by 31 nucleotides CSW01_13665: CSW01_13665 - guanylate kinase, at 2,911,362 to 2,911,985 _13665 CSW01_13670: CSW01_13670 - DNA-directed RNA polymerase subunit omega, at 2,912,093 to 2,912,365 _13670 CSW01_13675: CSW01_13675 - bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, at 2,912,397 to 2,914,514 _13675 Position (kb) 2912 2913Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2911.093 kb on - strandat 2911.190 kb on + strandat 2911.198 kb on - strandat 2911.291 kb on + strandat 2911.954 kb on + strandat 2911.954 kb on + strandat 2912.032 kb on + strandat 2912.040 kb on - strandat 2912.174 kb on + strand, within CSW01_13670at 2912.174 kb on + strand, within CSW01_13670at 2912.297 kb on + strand, within CSW01_13670at 2912.359 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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2,911,093 - +1.1
2,911,190 + +0.6
2,911,198 - -2.4
2,911,291 + -2.4
2,911,954 + -4.4
2,911,954 + -1.8
2,912,032 + +0.2
2,912,040 - -1.1
2,912,174 + CSW01_13670 0.30 -3.8
2,912,174 + CSW01_13670 0.30 -1.5
2,912,297 + CSW01_13670 0.75 -0.2
2,912,359 + +0.1

Or see this region's nucleotide sequence