Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13360

Experiment: ICP3_phage_41.1_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_41.1_MOI_rep2
2,842,737	-		CSW01_13350	0.82	+0.2
2,842,748	-		CSW01_13350	0.83	-0.9
2,842,765	-		CSW01_13350	0.84	-0.6
2,842,772	-		CSW01_13350	0.85	+1.7
2,842,772	-		CSW01_13350	0.85	-0.8
2,842,806	-		CSW01_13350	0.87	+1.8
2,842,806	-		CSW01_13350	0.87	+0.9
2,842,836	-		CSW01_13350	0.89	-0.4
2,842,836	-		CSW01_13350	0.89	+0.9
2,842,857	-				+0.9
2,842,904	+				+1.4
2,842,906	+				-2.5
2,842,911	+				+0.7
2,842,911	+				-3.3
2,842,912	-				-1.6
2,842,916	+				+0.9
2,842,919	-				-0.6
2,842,919	-				+0.4
2,842,919	-				+1.3
2,842,919	-				+0.6
2,842,919	-				+0.3
2,842,919	-				+0.2
2,842,919	-				+1.2
2,842,919	-				-2.1
2,842,919	-				+0.3
2,842,919	-				+0.8
2,842,919	-				+1.1
2,842,924	-				+0.0
2,842,934	-				+3.1
2,842,960	+				+1.2
2,843,040	+				-3.2
2,843,047	+				-0.1
2,843,094	-				-4.2
2,843,109	+				-1.9
2,843,109	+				-2.6
2,843,109	+				-2.9
2,843,109	+				-3.0
2,843,109	+				+1.4
2,843,111	+				+1.3
2,843,111	+				-0.1
2,843,117	-				-0.4
2,843,117	-				+1.6
2,843,117	-				+0.5
2,843,117	-				+1.0
2,843,117	-				+0.1
2,843,117	-				+0.9
2,843,117	-				+1.2
2,843,117	-				+1.2
2,843,119	-				-3.2
2,843,119	-				+0.3
2,843,119	-				+0.1
2,843,129	-				+0.7
2,843,129	-				-0.5
2,843,151	+				+1.1
2,843,151	+				-1.6
2,843,151	+				-0.2
2,843,151	+				+1.7
2,843,153	+				-2.9
2,843,153	+				+1.8
2,843,153	+				+1.6
2,843,153	+				-0.7
2,843,153	+				+1.0
2,843,159	-				+1.1
2,843,159	-				+0.7
2,843,159	-				-1.0
2,843,159	-				-0.8
2,843,159	-				-0.2
2,843,159	-				+1.3
2,843,159	-				+0.7
2,843,161	-				+0.2
2,843,177	+				-3.2
2,843,253	-		CSW01_13355	0.12	-1.7
2,843,300	-		CSW01_13355	0.30	+0.4
2,843,300	-		CSW01_13355	0.30	+1.3
2,843,300	-		CSW01_13355	0.30	-0.0
2,843,309	+		CSW01_13355	0.33	-0.7
2,843,365	-		CSW01_13355	0.54	-3.1
2,843,411	+		CSW01_13355	0.72	+0.9
2,843,446	+		CSW01_13355	0.85	-0.1
2,843,587	+				-3.3
2,843,587	-				-0.6
2,843,595	-				-0.9
2,843,595	-				-0.9
2,843,595	-				+0.3
2,843,595	-				+0.9
2,843,614	-				+1.8
2,843,735	+				-1.3
2,843,751	+				+0.9
2,843,751	+				-1.4
2,843,759	-				-0.5
2,843,846	+				-2.0
2,843,869	+				+0.9
2,843,911	+		CSW01_13360	0.13	+1.5
2,843,911	+		CSW01_13360	0.13	-3.7
2,843,918	-		CSW01_13360	0.13	-1.9
2,844,013	-		CSW01_13360	0.20	+0.7
2,844,032	-		CSW01_13360	0.21	+0.1
2,844,038	+		CSW01_13360	0.22	-1.9
2,844,046	-		CSW01_13360	0.23	+0.9
2,844,112	+		CSW01_13360	0.27	-1.4
2,844,139	-		CSW01_13360	0.29	+0.8
2,844,162	+		CSW01_13360	0.31	-2.9
2,844,178	+		CSW01_13360	0.32	-0.2
2,844,179	-		CSW01_13360	0.32	-2.6
2,844,211	+		CSW01_13360	0.34	+1.0
2,844,211	+		CSW01_13360	0.34	+0.7
2,844,211	+		CSW01_13360	0.34	+1.5
2,844,218	-		CSW01_13360	0.35	-0.5
2,844,219	-		CSW01_13360	0.35	-2.1
2,844,219	-		CSW01_13360	0.35	+1.3
2,844,219	-		CSW01_13360	0.35	+1.4
2,844,219	-		CSW01_13360	0.35	-2.0
2,844,219	-		CSW01_13360	0.35	-1.6
2,844,219	-		CSW01_13360	0.35	-1.0
2,844,292	-		CSW01_13360	0.40	-0.1
2,844,292	-		CSW01_13360	0.40	+0.5
2,844,404	-		CSW01_13360	0.49	+0.6
2,844,488	-		CSW01_13360	0.55	-0.9
2,844,513	-		CSW01_13360	0.56	+0.9
2,844,526	-		CSW01_13360	0.57	-0.5
2,844,580	+		CSW01_13360	0.61	+1.1
2,844,614	+		CSW01_13360	0.64	-1.1
2,844,614	+		CSW01_13360	0.64	-4.1
2,844,614	+		CSW01_13360	0.64	-2.7
2,844,649	+		CSW01_13360	0.66	+0.3
2,844,652	-		CSW01_13360	0.67	+1.9
2,844,704	+		CSW01_13360	0.70	-0.2
2,844,766	-		CSW01_13360	0.75	+1.0
2,844,769	+		CSW01_13360	0.75	-2.0
2,844,850	+		CSW01_13360	0.81	-0.1
2,844,850	+		CSW01_13360	0.81	+2.3
2,844,850	+		CSW01_13360	0.81	-2.6
2,844,858	-		CSW01_13360	0.81	+0.4
2,844,858	-		CSW01_13360	0.81	+2.2
2,844,858	-		CSW01_13360	0.81	+2.3
2,844,858	-		CSW01_13360	0.81	-2.7
2,844,960	+		CSW01_13360	0.89	+0.1
2,844,978	+				-2.5
2,844,985	+				-0.2
2,845,042	+				-3.2
2,845,060	+				+1.0
2,845,113	+				-3.0
2,845,301	-				-1.6
2,845,301	-				-1.9
2,845,301	-				+0.4
2,845,308	+				+0.3
2,845,336	-				+0.7
2,845,336	-				-0.7
2,845,373	-				+0.2
2,845,431	-				+0.8
2,845,447	-				-4.1
2,845,480	-		CSW01_13370	0.11	-0.8
2,845,508	+		CSW01_13370	0.13	+0.7
2,845,508	+		CSW01_13370	0.13	+0.6
2,845,509	-		CSW01_13370	0.13	+0.1
2,845,535	-		CSW01_13370	0.16	+0.1
2,845,582	+		CSW01_13370	0.20	-0.3
2,845,590	+		CSW01_13370	0.20	+0.0
2,845,590	+		CSW01_13370	0.20	-1.7
2,845,598	-		CSW01_13370	0.21	-2.7
2,845,598	-		CSW01_13370	0.21	-1.6
2,845,661	+		CSW01_13370	0.26	+1.4
2,845,708	-		CSW01_13370	0.30	-0.4
2,845,716	+		CSW01_13370	0.31	-1.7
2,845,762	+		CSW01_13370	0.34	-0.4
2,845,794	+		CSW01_13370	0.37	-0.1
2,845,814	+		CSW01_13370	0.39	+1.3
2,845,814	+		CSW01_13370	0.39	+0.2
2,845,819	+		CSW01_13370	0.39	-1.7
2,845,822	-		CSW01_13370	0.39	-0.2
2,845,836	+		CSW01_13370	0.40	+0.1
2,845,838	+		CSW01_13370	0.41	-2.3
2,846,026	-		CSW01_13370	0.56	-2.4
2,846,034	-		CSW01_13370	0.57	+0.4
2,846,072	-		CSW01_13370	0.60	-0.3
2,846,085	+		CSW01_13370	0.61	+1.5
2,846,085	+		CSW01_13370	0.61	+0.6
2,846,085	+		CSW01_13370	0.61	+1.6
2,846,093	-		CSW01_13370	0.62	+0.3
2,846,111	+		CSW01_13370	0.63	+0.7