Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13265

Experiment: ICP3_phage_41.1_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_41.1_MOI_rep2
2,820,884	+		CSW01_13260	0.35	-2.9
2,820,884	+		CSW01_13260	0.35	+1.4
2,820,884	+		CSW01_13260	0.35	+0.0
2,820,884	+		CSW01_13260	0.35	-1.2
2,820,884	+		CSW01_13260	0.35	-1.4
2,820,892	-		CSW01_13260	0.35	-1.7
2,820,913	+		CSW01_13260	0.37	+1.9
2,820,913	+		CSW01_13260	0.37	+0.2
2,820,923	+		CSW01_13260	0.38	+0.7
2,820,923	+		CSW01_13260	0.38	+0.2
2,820,923	+		CSW01_13260	0.38	+0.3
2,820,931	-		CSW01_13260	0.38	+1.0
2,820,931	-		CSW01_13260	0.38	-0.2
2,821,100	+		CSW01_13260	0.50	-0.1
2,821,100	+		CSW01_13260	0.50	-1.5
2,821,135	+		CSW01_13260	0.53	-1.1
2,821,135	+		CSW01_13260	0.53	-2.9
2,821,135	+		CSW01_13260	0.53	+0.3
2,821,135	+		CSW01_13260	0.53	-1.4
2,821,135	+		CSW01_13260	0.53	-0.4
2,821,141	-		CSW01_13260	0.53	-0.5
2,821,143	-		CSW01_13260	0.53	+1.0
2,821,143	-		CSW01_13260	0.53	+0.2
2,821,143	-		CSW01_13260	0.53	-0.7
2,821,143	-		CSW01_13260	0.53	-3.6
2,821,143	-		CSW01_13260	0.53	-1.4
2,821,143	-		CSW01_13260	0.53	-0.5
2,821,143	-		CSW01_13260	0.53	+0.2
2,821,143	-		CSW01_13260	0.53	+0.2
2,821,167	+		CSW01_13260	0.55	+0.3
2,821,172	+		CSW01_13260	0.55	+0.3
2,821,177	+		CSW01_13260	0.55	-0.0
2,821,178	+		CSW01_13260	0.56	+0.6
2,821,178	+		CSW01_13260	0.56	-3.9
2,821,180	-		CSW01_13260	0.56	-0.2
2,821,184	+		CSW01_13260	0.56	+0.6
2,821,186	-		CSW01_13260	0.56	-0.7
2,821,214	+		CSW01_13260	0.58	-3.5
2,821,233	+		CSW01_13260	0.59	-1.0
2,821,241	-		CSW01_13260	0.60	+0.4
2,821,278	-		CSW01_13260	0.63	+0.4
2,821,318	+		CSW01_13260	0.65	+1.2
2,821,318	+		CSW01_13260	0.65	+0.6
2,821,318	+		CSW01_13260	0.65	-0.0
2,821,318	+		CSW01_13260	0.65	+0.2
2,821,318	+		CSW01_13260	0.65	+1.4
2,821,318	+		CSW01_13260	0.65	-1.5
2,821,318	+		CSW01_13260	0.65	-1.9
2,821,326	-		CSW01_13260	0.66	+0.2
2,821,326	-		CSW01_13260	0.66	-1.1
2,821,326	-		CSW01_13260	0.66	-2.7
2,821,326	-		CSW01_13260	0.66	-2.0
2,821,326	-		CSW01_13260	0.66	+0.4
2,821,326	-		CSW01_13260	0.66	-0.0
2,821,326	-		CSW01_13260	0.66	+0.5
2,821,326	-		CSW01_13260	0.66	+1.3
2,821,326	-		CSW01_13260	0.66	-1.4
2,821,326	-		CSW01_13260	0.66	+0.6
2,821,359	-		CSW01_13260	0.68	+0.1
2,821,382	-		CSW01_13260	0.70	+0.9
2,821,383	-		CSW01_13260	0.70	+0.4
2,821,451	-		CSW01_13260	0.75	+0.4
2,821,465	+		CSW01_13260	0.76	+0.6
2,821,465	+		CSW01_13260	0.76	+0.7
2,821,465	+		CSW01_13260	0.76	+2.5
2,821,473	-		CSW01_13260	0.76	+1.4
2,821,473	-		CSW01_13260	0.76	+2.0
2,821,512	-		CSW01_13260	0.79	-0.6
2,821,604	+		CSW01_13260	0.86	-2.7
2,821,663	-		CSW01_13260	0.90	+0.9
2,821,744	-				+0.2
2,821,788	-				-1.7
2,821,793	-				+1.4
2,821,813	+				-2.2
2,821,814	-				-1.9
2,821,906	+				+0.3
2,821,907	-				+0.7
2,821,913	+				-1.7
2,821,927	+				-2.4
2,821,975	+				-1.2
2,821,993	+				+0.3
2,822,001	-				-1.1
2,822,001	-				+1.0
2,822,029	-				-1.4
2,822,029	-				+1.0
2,822,029	-				+0.5
2,822,106	+				-1.3
2,822,106	+				-0.2
2,822,106	+				+0.7
2,822,106	+				+1.5
2,822,114	-				-3.6
2,822,114	-				-2.4
2,822,212	+		CSW01_13265	0.13	-0.2
2,822,221	-		CSW01_13265	0.13	+1.7
2,822,234	+		CSW01_13265	0.14	+0.7
2,822,234	+		CSW01_13265	0.14	-3.3
2,822,252	-		CSW01_13265	0.14	+0.4
2,822,252	-		CSW01_13265	0.14	-0.5
2,822,342	-		CSW01_13265	0.18	+0.2
2,822,350	+		CSW01_13265	0.18	-2.1
2,822,350	+		CSW01_13265	0.18	+1.2
2,822,458	+		CSW01_13265	0.22	-0.3
2,822,499	+		CSW01_13265	0.24	-2.0
2,822,499	+		CSW01_13265	0.24	+0.3
2,822,530	+		CSW01_13265	0.25	+0.4
2,822,646	+		CSW01_13265	0.29	+0.1
2,822,654	-		CSW01_13265	0.30	+0.7
2,822,654	-		CSW01_13265	0.30	-0.9
2,822,654	-		CSW01_13265	0.30	-2.0
2,822,654	-		CSW01_13265	0.30	+1.5
2,822,716	+		CSW01_13265	0.32	-0.5
2,822,716	+		CSW01_13265	0.32	+0.3
2,822,721	+		CSW01_13265	0.32	+0.1
2,822,724	-		CSW01_13265	0.32	+3.2
2,822,729	-		CSW01_13265	0.33	+0.5
2,822,736	+		CSW01_13265	0.33	-0.6
2,822,736	+		CSW01_13265	0.33	-0.3
2,822,736	+		CSW01_13265	0.33	-2.0
2,822,736	+		CSW01_13265	0.33	-2.2
2,822,736	+		CSW01_13265	0.33	+1.2
2,822,736	-		CSW01_13265	0.33	-3.7
2,822,738	+		CSW01_13265	0.33	+0.1
2,822,738	+		CSW01_13265	0.33	+1.2
2,822,744	-		CSW01_13265	0.33	+1.0
2,822,744	-		CSW01_13265	0.33	+0.2
2,822,744	-		CSW01_13265	0.33	-1.0
2,822,744	-		CSW01_13265	0.33	+0.0
2,822,744	-		CSW01_13265	0.33	+1.6
2,822,744	-		CSW01_13265	0.33	+1.3
2,822,744	-		CSW01_13265	0.33	-2.6
2,822,849	-		CSW01_13265	0.37	-0.4
2,822,860	+		CSW01_13265	0.38	+0.5
2,822,918	+		CSW01_13265	0.40	+0.3
2,823,081	+		CSW01_13265	0.46	+0.2
2,823,081	+		CSW01_13265	0.46	+1.6
2,823,094	-		CSW01_13265	0.47	+0.0
2,823,180	-		CSW01_13265	0.50	-2.1
2,823,228	-		CSW01_13265	0.52	+1.3
2,823,263	-		CSW01_13265	0.53	+0.6
2,823,329	+		CSW01_13265	0.56	+0.8
2,823,329	+		CSW01_13265	0.56	+0.1
2,823,376	-		CSW01_13265	0.57	-0.3
2,823,426	-		CSW01_13265	0.59	-0.3
2,823,437	+		CSW01_13265	0.60	-0.6
2,823,447	+		CSW01_13265	0.60	+0.4
2,823,462	-		CSW01_13265	0.61	+0.4
2,823,467	+		CSW01_13265	0.61	-0.1
2,823,475	+		CSW01_13265	0.61	+0.2
2,823,475	-		CSW01_13265	0.61	+2.7
2,823,521	-		CSW01_13265	0.63	-1.4
2,823,521	-		CSW01_13265	0.63	-2.1
2,823,521	-		CSW01_13265	0.63	-0.2
2,823,540	-		CSW01_13265	0.64	+0.2
2,823,599	-		CSW01_13265	0.66	-1.9
2,823,614	+		CSW01_13265	0.66	+0.7
2,823,614	+		CSW01_13265	0.66	-2.7
2,823,622	-		CSW01_13265	0.67	-3.9
2,823,640	+		CSW01_13265	0.67	-2.9
2,823,648	-		CSW01_13265	0.68	+2.0
2,823,648	-		CSW01_13265	0.68	-1.1
2,823,648	-		CSW01_13265	0.68	-1.3
2,823,664	+		CSW01_13265	0.68	-0.8
2,823,664	+		CSW01_13265	0.68	-3.7
2,823,666	+		CSW01_13265	0.68	-2.2
2,823,674	-		CSW01_13265	0.69	+0.7
2,823,676	-		CSW01_13265	0.69	-4.0
2,823,728	-		CSW01_13265	0.71	+0.3
2,823,762	+		CSW01_13265	0.72	+0.6
2,823,770	+		CSW01_13265	0.72	+0.3
2,823,770	+		CSW01_13265	0.72	+0.2
2,823,778	-		CSW01_13265	0.73	+0.2
2,823,780	+		CSW01_13265	0.73	+1.8
2,823,780	+		CSW01_13265	0.73	+0.4
2,823,799	+		CSW01_13265	0.74	+0.2
2,823,799	+		CSW01_13265	0.74	+0.8
2,823,807	-		CSW01_13265	0.74	+1.4
2,823,844	+		CSW01_13265	0.75	-0.1
2,823,844	+		CSW01_13265	0.75	+0.1
2,823,858	+		CSW01_13265	0.76	-0.5
2,823,863	+		CSW01_13265	0.76	-2.3
2,823,866	-		CSW01_13265	0.76	+0.7
2,823,876	-		CSW01_13265	0.77	+0.5
2,823,893	+		CSW01_13265	0.77	-0.4
2,823,906	+		CSW01_13265	0.78	+0.7
2,823,906	+		CSW01_13265	0.78	-2.5
2,823,909	-		CSW01_13265	0.78	-1.1
2,823,911	+		CSW01_13265	0.78	+1.4
2,823,922	-		CSW01_13265	0.78	+0.2
2,823,950	+		CSW01_13265	0.79	-1.3
2,823,950	+		CSW01_13265	0.79	-2.3
2,823,950	+		CSW01_13265	0.79	+1.1
2,823,950	+		CSW01_13265	0.79	+0.1
2,823,958	-		CSW01_13265	0.80	+0.6
2,823,962	+		CSW01_13265	0.80	+0.5
2,824,003	+		CSW01_13265	0.81	+0.7
2,824,035	+		CSW01_13265	0.83	-0.4
2,824,040	+		CSW01_13265	0.83	-3.7
2,824,048	-		CSW01_13265	0.83	-2.8
2,824,048	-		CSW01_13265	0.83	-0.3
2,824,110	-		CSW01_13265	0.85	-1.8
2,824,115	+		CSW01_13265	0.86	-0.4
2,824,115	+		CSW01_13265	0.86	+0.6
2,824,115	+		CSW01_13265	0.86	-0.2
2,824,115	+		CSW01_13265	0.86	+1.3
2,824,115	+		CSW01_13265	0.86	+0.6
2,824,123	-		CSW01_13265	0.86	-0.4
2,824,123	-		CSW01_13265	0.86	+0.3
2,824,123	-		CSW01_13265	0.86	+0.8
2,824,188	+		CSW01_13265	0.88	-0.3
2,824,196	+		CSW01_13265	0.89	-3.5
2,824,207	+		CSW01_13265	0.89	+1.1
2,824,210	-		CSW01_13265	0.89	+0.8
2,824,215	-		CSW01_13265	0.90	-0.1
2,824,227	-		CSW01_13265	0.90	+0.2
2,824,245	+				-2.8
2,824,273	-				+2.2
2,824,375	+				-0.8
2,824,383	-				+0.4
2,824,383	-				+1.1
2,824,404	+				+0.9
2,824,406	+				-1.5
2,824,406	+				+1.2
2,824,411	+				+0.9
2,824,444	+				-3.3
2,824,444	+				-1.9
2,824,475	+				-2.6
2,824,483	-				+1.7
2,824,492	+				+0.1
2,824,498	+				-2.9
2,824,502	-				-2.4
2,824,529	-				+0.4
2,824,529	-				+0.5
2,824,531	+				+0.5
2,824,534	-				+0.2
2,824,546	+				+2.4
2,824,581	+				+0.3
2,824,581	+				-0.0
2,824,581	+				+0.5
2,824,581	+				+0.6
2,824,581	+				-0.3
2,824,589	-				+1.1
2,824,589	-				+0.5
2,824,589	-				+0.7
2,824,643	-				+1.3
2,824,716	+				+0.6
2,824,765	+				+1.4
2,824,800	+				-4.5
2,824,838	+		CSW01_13270	0.10	-1.1
2,824,846	-		CSW01_13270	0.11	+0.0
2,824,846	-		CSW01_13270	0.11	+0.4
2,824,901	+		CSW01_13270	0.18	+0.6
2,824,952	+		CSW01_13270	0.25	+1.8
2,825,025	+		CSW01_13270	0.34	+0.1
2,825,025	+		CSW01_13270	0.34	-0.2
2,825,033	-		CSW01_13270	0.36	+0.2
2,825,033	-		CSW01_13270	0.36	+0.6
2,825,039	+		CSW01_13270	0.36	+0.3
2,825,104	+		CSW01_13270	0.45	-0.1
2,825,109	+		CSW01_13270	0.45	+0.2
2,825,114	+		CSW01_13270	0.46	-3.8
2,825,114	+		CSW01_13270	0.46	-0.5
2,825,120	-		CSW01_13270	0.47	+0.7
2,825,122	-		CSW01_13270	0.47	+0.6
2,825,122	-		CSW01_13270	0.47	+0.2
2,825,122	-		CSW01_13270	0.47	-3.4
2,825,122	-		CSW01_13270	0.47	-0.4
2,825,122	-		CSW01_13270	0.47	-0.9
2,825,122	-		CSW01_13270	0.47	+0.1
2,825,185	+		CSW01_13270	0.55	-4.4
2,825,255	-		CSW01_13270	0.64	+0.7
2,825,260	-		CSW01_13270	0.65	+1.5
2,825,352	+		CSW01_13270	0.77	-2.4
2,825,366	-		CSW01_13270	0.79	+0.2
2,825,399	-		CSW01_13270	0.83	+2.0
2,825,404	-		CSW01_13270	0.83	+0.7
2,825,409	-		CSW01_13270	0.84	-3.0
2,825,458	+				+1.6
2,825,464	+				+1.1
2,825,464	-				-3.3
2,825,472	-				+0.2
2,825,472	-				+0.5
2,825,488	+				-2.9