Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12080

Experiment: ICP3_phage_41.1_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_41.1_MOI_rep2
2,581,097	-				-0.6
2,581,135	+				-2.4
2,581,160	+		CSW01_12075	0.10	+0.5
2,581,161	-		CSW01_12075	0.10	+1.4
2,581,161	-		CSW01_12075	0.10	+0.6
2,581,161	-		CSW01_12075	0.10	+0.9
2,581,163	-		CSW01_12075	0.11	+1.2
2,581,168	-		CSW01_12075	0.11	-1.1
2,581,182	+		CSW01_12075	0.13	-1.0
2,581,184	+		CSW01_12075	0.13	+1.0
2,581,192	-		CSW01_12075	0.14	-2.2
2,581,192	-		CSW01_12075	0.14	-3.6
2,581,222	-		CSW01_12075	0.17	+0.6
2,581,242	-		CSW01_12075	0.19	+1.2
2,581,252	-		CSW01_12075	0.20	-0.0
2,581,304	-		CSW01_12075	0.25	-0.2
2,581,309	-		CSW01_12075	0.26	-1.8
2,581,320	-		CSW01_12075	0.27	+0.7
2,581,320	-		CSW01_12075	0.27	+0.6
2,581,320	-		CSW01_12075	0.27	+2.0
2,581,333	-		CSW01_12075	0.28	+0.1
2,581,358	-		CSW01_12075	0.31	-1.4
2,581,366	-		CSW01_12075	0.32	-3.0
2,581,366	-		CSW01_12075	0.32	-1.0
2,581,408	+		CSW01_12075	0.36	-2.8
2,581,408	+		CSW01_12075	0.36	+0.9
2,581,615	+		CSW01_12075	0.57	-2.7
2,581,623	-		CSW01_12075	0.58	+0.3
2,581,626	+		CSW01_12075	0.58	-1.0
2,581,627	+		CSW01_12075	0.58	-2.8
2,581,632	+		CSW01_12075	0.59	-1.9
2,581,634	-		CSW01_12075	0.59	+1.2
2,581,635	-		CSW01_12075	0.59	-0.3
2,581,664	-		CSW01_12075	0.62	+1.6
2,581,705	+		CSW01_12075	0.66	-0.9
2,581,789	+		CSW01_12075	0.75	+1.6
2,582,029	+				-2.8
2,582,094	+				+0.6
2,582,094	+				-0.5
2,582,094	+				+2.0
2,582,094	+				-2.2
2,582,094	+				+0.0
2,582,094	+				+0.4
2,582,094	+				-0.9
2,582,094	+				-2.2
2,582,094	+				-1.0
2,582,094	+				-2.4
2,582,094	+				+0.0
2,582,094	+				-3.5
2,582,094	+				-0.5
2,582,094	+				-0.1
2,582,094	+				-0.7
2,582,094	+				-1.4
2,582,094	+				+0.2
2,582,096	+				+0.6
2,582,099	+				-3.7
2,582,102	-				-2.3
2,582,102	-				+1.2
2,582,102	-				+0.3
2,582,102	-				-3.0
2,582,102	-				+0.3
2,582,102	-				-0.2
2,582,107	+				+0.6
2,582,107	+				+1.0
2,582,107	+				+0.7
2,582,107	+				+1.0
2,582,107	+				-0.3
2,582,107	+				+1.0
2,582,107	+				-0.3
2,582,107	+				+0.7
2,582,107	+				-1.0
2,582,107	-				-0.3
2,582,107	-				-0.4
2,582,113	-				+0.3
2,582,115	-				-0.8
2,582,115	-				-3.0
2,582,136	+				+1.4
2,582,136	+				-0.2
2,582,152	+				+1.0
2,582,152	+				-2.0
2,582,155	+				+0.4
2,582,155	+				+1.0
2,582,156	+				+0.6
2,582,160	+				-2.3
2,582,160	+				-3.3
2,582,163	-				-0.8
2,582,165	+				-0.8
2,582,165	+				-0.2
2,582,165	+				-0.1
2,582,168	-				-2.2
2,582,193	+				+0.2
2,582,196	+		CSW01_12080	0.10	+0.1
2,582,201	-		CSW01_12080	0.10	-0.4
2,582,326	+		CSW01_12080	0.18	-3.0
2,582,333	+		CSW01_12080	0.19	+0.8
2,582,341	-		CSW01_12080	0.19	-0.8
2,582,366	-		CSW01_12080	0.21	-1.1
2,582,500	+		CSW01_12080	0.29	-0.4
2,582,508	-		CSW01_12080	0.29	-0.2
2,582,508	-		CSW01_12080	0.29	-2.3
2,582,513	-		CSW01_12080	0.30	-1.8
2,582,555	+		CSW01_12080	0.32	-2.4
2,582,562	+		CSW01_12080	0.33	-1.0
2,582,562	+		CSW01_12080	0.33	-0.6
2,582,570	-		CSW01_12080	0.33	+0.2
2,582,570	-		CSW01_12080	0.33	-0.2
2,582,570	-		CSW01_12080	0.33	+0.2
2,582,587	+		CSW01_12080	0.34	+0.0
2,582,595	-		CSW01_12080	0.35	+0.2
2,582,595	-		CSW01_12080	0.35	-3.7
2,582,597	+		CSW01_12080	0.35	-1.8
2,582,597	+		CSW01_12080	0.35	+0.9
2,582,602	+		CSW01_12080	0.35	+0.7
2,582,612	+		CSW01_12080	0.36	+1.0
2,582,612	+		CSW01_12080	0.36	-0.3
2,582,612	+		CSW01_12080	0.36	+0.1
2,582,612	+		CSW01_12080	0.36	+0.4
2,582,612	+		CSW01_12080	0.36	+0.2
2,582,618	+		CSW01_12080	0.36	+1.1
2,582,620	-		CSW01_12080	0.36	-0.3
2,582,630	+		CSW01_12080	0.37	-3.9
2,582,648	-		CSW01_12080	0.38	-1.3
2,582,650	+		CSW01_12080	0.38	+0.1
2,582,656	+		CSW01_12080	0.39	-2.7
2,582,665	-		CSW01_12080	0.39	-1.1
2,582,822	+		CSW01_12080	0.49	+0.9
2,582,822	+		CSW01_12080	0.49	+0.6
2,582,989	+		CSW01_12080	0.59	-1.1
2,582,996	+		CSW01_12080	0.59	+0.3
2,583,030	-		CSW01_12080	0.62	-0.7
2,583,046	-		CSW01_12080	0.63	-0.5
2,583,086	+		CSW01_12080	0.65	-1.0
2,583,086	+		CSW01_12080	0.65	-2.0
2,583,150	+		CSW01_12080	0.69	+1.5
2,583,153	-		CSW01_12080	0.69	-0.2
2,583,221	+		CSW01_12080	0.73	-0.3
2,583,286	+		CSW01_12080	0.77	+0.5
2,583,298	+		CSW01_12080	0.78	-0.3
2,583,299	-		CSW01_12080	0.78	-0.5
2,583,301	+		CSW01_12080	0.78	-1.5
2,583,306	-		CSW01_12080	0.79	+0.7
2,583,306	-		CSW01_12080	0.79	-0.2
2,583,306	-		CSW01_12080	0.79	-1.3
2,583,306	-		CSW01_12080	0.79	+0.3
2,583,306	-		CSW01_12080	0.79	-3.2
2,583,306	-		CSW01_12080	0.79	+0.2
2,583,306	-		CSW01_12080	0.79	-1.4
2,583,306	-		CSW01_12080	0.79	+1.5
2,583,314	-		CSW01_12080	0.79	-0.2
2,583,378	+		CSW01_12080	0.83	-1.7
2,583,383	+		CSW01_12080	0.83	+0.5
2,583,404	+		CSW01_12080	0.85	-1.1
2,583,427	-		CSW01_12080	0.86	-2.5
2,583,497	+				-0.5
2,583,510	+				+0.4
2,583,516	+				-1.7
2,583,518	-				-2.0
2,583,526	+				-0.0
2,583,568	+				-2.1
2,583,685	+				-2.6
2,583,691	-				-1.3
2,583,691	-				+0.5
2,583,731	+		CSW01_12085	0.11	-0.1
2,583,732	+		CSW01_12085	0.11	-0.3
2,583,759	+		CSW01_12085	0.15	+1.2
2,583,764	+		CSW01_12085	0.16	-2.4
2,583,790	+		CSW01_12085	0.20	+0.3
2,583,790	+		CSW01_12085	0.20	+0.3
2,583,791	+		CSW01_12085	0.20	-2.1
2,583,795	+		CSW01_12085	0.21	+0.5
2,583,795	+		CSW01_12085	0.21	+0.1
2,583,796	+		CSW01_12085	0.21	-0.4
2,583,797	+		CSW01_12085	0.21	-3.2
2,583,798	+		CSW01_12085	0.21	-3.0
2,583,805	+		CSW01_12085	0.22	-3.6
2,583,805	-		CSW01_12085	0.22	+0.7
2,583,805	-		CSW01_12085	0.22	+0.5
2,583,807	+		CSW01_12085	0.23	+1.2
2,583,813	+		CSW01_12085	0.24	+0.3
2,583,815	-		CSW01_12085	0.24	-0.2
2,583,821	-		CSW01_12085	0.25	+0.3
2,583,821	-		CSW01_12085	0.25	+0.0
2,583,821	-		CSW01_12085	0.25	-0.2
2,583,936	+		CSW01_12085	0.44	-0.4
2,584,015	+		CSW01_12085	0.56	-0.5
2,584,031	-		CSW01_12085	0.59	-0.4
2,584,033	-		CSW01_12085	0.59	-1.9
2,584,104	+		CSW01_12085	0.71	-0.9
2,584,104	+		CSW01_12085	0.71	-3.5
2,584,297	+				-1.7
2,584,305	-				-0.2
2,584,329	-				-2.7
2,584,360	+				-1.7
2,584,390	+				-3.6
2,584,395	-				-2.6
2,584,396	+				-3.4
2,584,396	+				-2.3
2,584,396	+				-2.4
2,584,396	+				+1.0
2,584,402	+				-0.0
2,584,407	+				-3.2
2,584,407	+				+1.0
2,584,407	+				+0.8
2,584,407	+				+0.2
2,584,407	+				-1.6
2,584,407	+				-0.5
2,584,407	+				-0.1
2,584,407	+				-1.6
2,584,407	+				-0.2
2,584,407	+				-1.0
2,584,407	+				+0.4
2,584,407	+				-0.4
2,584,408	+				-3.3
2,584,415	-				-1.7
2,584,415	-				+0.5
2,584,415	-				+0.4
2,584,415	-				-0.5
2,584,415	-				-0.8
2,584,415	-				-0.0
2,584,415	-				+1.4
2,584,415	-				+0.5
2,584,415	-				+0.1
2,584,415	-				+0.5
2,584,417	+				+0.9
2,584,431	+		CSW01_12090	0.14	+1.5
2,584,516	+		CSW01_12090	0.40	+0.8
2,584,555	+		CSW01_12090	0.53	-1.5
2,584,560	-		CSW01_12090	0.54	-0.9
2,584,602	-		CSW01_12090	0.67	-0.8
2,584,612	-		CSW01_12090	0.70	+0.1
2,584,612	-		CSW01_12090	0.70	+1.6