Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_08135

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_08130 and CSW01_08135 are separated by 84 nucleotidesCSW01_08135 and CSW01_08140 are separated by 56 nucleotidesCSW01_08140 and CSW01_08145 are separated by 109 nucleotides CSW01_08130: CSW01_08130 - LysR family transcriptional regulator, at 1,728,745 to 1,729,635 _08130 CSW01_08135: CSW01_08135 - MFS transporter, at 1,729,720 to 1,730,937 _08135 CSW01_08140: CSW01_08140 - DUF1415 domain-containing protein, at 1,730,994 to 1,731,542 _08140 CSW01_08145: CSW01_08145 - cadherin, at 1,731,652 to 1,740,123 _08145 Position (kb) 1729 1730 1731Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1729.199 kb on + strand, within CSW01_08130at 1729.355 kb on + strand, within CSW01_08130at 1729.355 kb on + strand, within CSW01_08130at 1729.355 kb on + strand, within CSW01_08130at 1729.363 kb on - strand, within CSW01_08130at 1729.363 kb on - strand, within CSW01_08130at 1729.363 kb on - strand, within CSW01_08130at 1729.373 kb on - strand, within CSW01_08130at 1729.466 kb on + strand, within CSW01_08130at 1729.474 kb on - strand, within CSW01_08130at 1729.476 kb on + strand, within CSW01_08130at 1729.476 kb on + strand, within CSW01_08130at 1729.484 kb on - strand, within CSW01_08130at 1729.484 kb on - strand, within CSW01_08130at 1729.484 kb on - strand, within CSW01_08130at 1729.484 kb on - strand, within CSW01_08130at 1729.502 kb on - strand, within CSW01_08130at 1729.690 kb on - strandat 1729.745 kb on + strandat 1729.885 kb on + strand, within CSW01_08135at 1729.934 kb on + strand, within CSW01_08135at 1729.998 kb on + strand, within CSW01_08135at 1730.001 kb on - strand, within CSW01_08135at 1730.001 kb on - strand, within CSW01_08135at 1730.006 kb on - strand, within CSW01_08135at 1730.124 kb on + strand, within CSW01_08135at 1730.162 kb on + strand, within CSW01_08135at 1730.162 kb on + strand, within CSW01_08135at 1730.162 kb on + strand, within CSW01_08135at 1730.162 kb on + strand, within CSW01_08135at 1730.179 kb on + strand, within CSW01_08135at 1730.193 kb on - strand, within CSW01_08135at 1730.337 kb on + strand, within CSW01_08135at 1730.420 kb on - strand, within CSW01_08135at 1730.623 kb on - strand, within CSW01_08135at 1730.777 kb on + strand, within CSW01_08135at 1730.787 kb on + strand, within CSW01_08135at 1730.787 kb on + strand, within CSW01_08135at 1730.809 kb on + strand, within CSW01_08135at 1730.943 kb on + strandat 1730.949 kb on - strandat 1731.273 kb on + strand, within CSW01_08140at 1731.363 kb on + strand, within CSW01_08140at 1731.470 kb on + strand, within CSW01_08140at 1731.485 kb on + strand, within CSW01_08140at 1731.776 kb on + strandat 1731.784 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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1,729,199 + CSW01_08130 0.51 +3.2
1,729,355 + CSW01_08130 0.68 -0.8
1,729,355 + CSW01_08130 0.68 +0.1
1,729,355 + CSW01_08130 0.68 -1.0
1,729,363 - CSW01_08130 0.69 +0.3
1,729,363 - CSW01_08130 0.69 +1.1
1,729,363 - CSW01_08130 0.69 -1.1
1,729,373 - CSW01_08130 0.70 -1.6
1,729,466 + CSW01_08130 0.81 +1.2
1,729,474 - CSW01_08130 0.82 -0.7
1,729,476 + CSW01_08130 0.82 +1.0
1,729,476 + CSW01_08130 0.82 -0.6
1,729,484 - CSW01_08130 0.83 -2.0
1,729,484 - CSW01_08130 0.83 +0.6
1,729,484 - CSW01_08130 0.83 -2.4
1,729,484 - CSW01_08130 0.83 -1.2
1,729,502 - CSW01_08130 0.85 +2.8
1,729,690 - -0.1
1,729,745 + -2.7
1,729,885 + CSW01_08135 0.14 -2.0
1,729,934 + CSW01_08135 0.18 -0.2
1,729,998 + CSW01_08135 0.23 +0.5
1,730,001 - CSW01_08135 0.23 -1.4
1,730,001 - CSW01_08135 0.23 -2.1
1,730,006 - CSW01_08135 0.23 +0.6
1,730,124 + CSW01_08135 0.33 +0.7
1,730,162 + CSW01_08135 0.36 -2.0
1,730,162 + CSW01_08135 0.36 -2.4
1,730,162 + CSW01_08135 0.36 -1.6
1,730,162 + CSW01_08135 0.36 -0.9
1,730,179 + CSW01_08135 0.38 -0.8
1,730,193 - CSW01_08135 0.39 -0.3
1,730,337 + CSW01_08135 0.51 -2.8
1,730,420 - CSW01_08135 0.57 +0.2
1,730,623 - CSW01_08135 0.74 -1.9
1,730,777 + CSW01_08135 0.87 -0.0
1,730,787 + CSW01_08135 0.88 +1.5
1,730,787 + CSW01_08135 0.88 +1.6
1,730,809 + CSW01_08135 0.89 +1.0
1,730,943 + -2.3
1,730,949 - -0.4
1,731,273 + CSW01_08140 0.51 +0.8
1,731,363 + CSW01_08140 0.67 +0.9
1,731,470 + CSW01_08140 0.87 -0.1
1,731,485 + CSW01_08140 0.89 +1.0
1,731,776 + +0.5
1,731,784 - +0.4

Or see this region's nucleotide sequence