Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_06450

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_06440 and CSW01_06445 are separated by 12 nucleotidesCSW01_06445 and CSW01_06450 overlap by 92 nucleotidesCSW01_06450 and CSW01_06455 overlap by 20 nucleotidesCSW01_06455 and CSW01_06460 are separated by 1 nucleotides CSW01_06440: CSW01_06440 - C4-dicarboxylate ABC transporter, at 1,348,128 to 1,349,411 _06440 CSW01_06445: CSW01_06445 - hypothetical protein, at 1,349,424 to 1,349,609 _06445 CSW01_06450: CSW01_06450 - histidine kinase, at 1,349,518 to 1,350,873 _06450 CSW01_06455: CSW01_06455 - DNA-binding response regulator, at 1,350,854 to 1,351,504 _06455 CSW01_06460: CSW01_06460 - MarR family transcriptional regulator, at 1,351,506 to 1,351,985 _06460 Position (kb) 1349 1350 1351Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1348.530 kb on + strand, within CSW01_06440at 1348.530 kb on + strand, within CSW01_06440at 1348.640 kb on + strand, within CSW01_06440at 1348.657 kb on + strand, within CSW01_06440at 1348.708 kb on - strand, within CSW01_06440at 1348.914 kb on + strand, within CSW01_06440at 1348.927 kb on + strand, within CSW01_06440at 1348.935 kb on - strand, within CSW01_06440at 1349.035 kb on - strand, within CSW01_06440at 1349.114 kb on - strand, within CSW01_06440at 1349.195 kb on - strand, within CSW01_06440at 1349.269 kb on + strand, within CSW01_06440at 1349.269 kb on + strand, within CSW01_06440at 1349.277 kb on - strand, within CSW01_06440at 1349.284 kb on + strandat 1349.296 kb on - strandat 1349.335 kb on + strandat 1349.352 kb on - strandat 1349.352 kb on - strandat 1349.352 kb on - strandat 1349.372 kb on + strandat 1349.416 kb on + strandat 1349.416 kb on + strandat 1349.604 kb on + strandat 1349.604 kb on + strandat 1349.612 kb on + strandat 1349.612 kb on + strandat 1349.612 kb on + strandat 1349.612 kb on + strandat 1349.612 kb on - strandat 1349.620 kb on - strandat 1349.661 kb on - strand, within CSW01_06450at 1349.692 kb on - strand, within CSW01_06450at 1349.755 kb on + strand, within CSW01_06450at 1349.770 kb on + strand, within CSW01_06450at 1349.835 kb on - strand, within CSW01_06450at 1349.841 kb on - strand, within CSW01_06450at 1349.852 kb on + strand, within CSW01_06450at 1349.852 kb on + strand, within CSW01_06450at 1349.898 kb on - strand, within CSW01_06450at 1349.941 kb on + strand, within CSW01_06450at 1350.044 kb on + strand, within CSW01_06450at 1350.049 kb on + strand, within CSW01_06450at 1350.049 kb on + strand, within CSW01_06450at 1350.049 kb on + strand, within CSW01_06450at 1350.049 kb on + strand, within CSW01_06450at 1350.057 kb on - strand, within CSW01_06450at 1350.057 kb on - strand, within CSW01_06450at 1350.057 kb on - strand, within CSW01_06450at 1350.057 kb on - strand, within CSW01_06450at 1350.057 kb on - strand, within CSW01_06450at 1350.074 kb on - strand, within CSW01_06450at 1350.079 kb on + strand, within CSW01_06450at 1350.155 kb on + strand, within CSW01_06450at 1350.172 kb on + strand, within CSW01_06450at 1350.339 kb on - strand, within CSW01_06450at 1350.362 kb on + strand, within CSW01_06450at 1350.362 kb on + strand, within CSW01_06450at 1350.362 kb on + strand, within CSW01_06450at 1350.362 kb on + strand, within CSW01_06450at 1350.362 kb on + strand, within CSW01_06450at 1350.362 kb on + strand, within CSW01_06450at 1350.362 kb on + strand, within CSW01_06450at 1350.362 kb on + strand, within CSW01_06450at 1350.362 kb on + strand, within CSW01_06450at 1350.370 kb on - strand, within CSW01_06450at 1350.370 kb on - strand, within CSW01_06450at 1350.370 kb on - strand, within CSW01_06450at 1350.370 kb on - strand, within CSW01_06450at 1350.370 kb on - strand, within CSW01_06450at 1350.370 kb on - strand, within CSW01_06450at 1350.591 kb on + strand, within CSW01_06450at 1350.599 kb on - strand, within CSW01_06450at 1350.601 kb on + strand, within CSW01_06450at 1350.601 kb on + strand, within CSW01_06450at 1350.601 kb on + strand, within CSW01_06450at 1350.609 kb on - strand, within CSW01_06450at 1350.609 kb on - strand, within CSW01_06450at 1350.609 kb on - strand, within CSW01_06450at 1350.694 kb on - strand, within CSW01_06450at 1350.746 kb on + strandat 1350.890 kb on - strandat 1350.911 kb on + strandat 1350.929 kb on - strand, within CSW01_06455at 1350.967 kb on - strand, within CSW01_06455at 1350.990 kb on + strand, within CSW01_06455at 1351.000 kb on + strand, within CSW01_06455at 1351.000 kb on + strand, within CSW01_06455at 1351.059 kb on + strand, within CSW01_06455at 1351.067 kb on - strand, within CSW01_06455at 1351.117 kb on + strand, within CSW01_06455at 1351.263 kb on + strand, within CSW01_06455at 1351.417 kb on - strand, within CSW01_06455at 1351.453 kb on + strandat 1351.499 kb on - strandat 1351.503 kb on + strandat 1351.503 kb on + strandat 1351.589 kb on + strand, within CSW01_06460at 1351.589 kb on + strand, within CSW01_06460at 1351.589 kb on + strand, within CSW01_06460at 1351.589 kb on + strand, within CSW01_06460at 1351.589 kb on + strand, within CSW01_06460at 1351.597 kb on - strand, within CSW01_06460at 1351.602 kb on - strand, within CSW01_06460at 1351.608 kb on + strand, within CSW01_06460at 1351.616 kb on - strand, within CSW01_06460at 1351.718 kb on - strand, within CSW01_06460at 1351.740 kb on - strand, within CSW01_06460at 1351.748 kb on + strand, within CSW01_06460at 1351.751 kb on + strand, within CSW01_06460at 1351.751 kb on + strand, within CSW01_06460at 1351.751 kb on + strand, within CSW01_06460at 1351.751 kb on + strand, within CSW01_06460at 1351.759 kb on - strand, within CSW01_06460at 1351.759 kb on - strand, within CSW01_06460at 1351.759 kb on - strand, within CSW01_06460at 1351.759 kb on - strand, within CSW01_06460at 1351.759 kb on - strand, within CSW01_06460at 1351.820 kb on - strand, within CSW01_06460

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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1,348,530 + CSW01_06440 0.31 -0.9
1,348,530 + CSW01_06440 0.31 +0.5
1,348,640 + CSW01_06440 0.40 -1.2
1,348,657 + CSW01_06440 0.41 +1.4
1,348,708 - CSW01_06440 0.45 +1.8
1,348,914 + CSW01_06440 0.61 -3.4
1,348,927 + CSW01_06440 0.62 +0.5
1,348,935 - CSW01_06440 0.63 -2.0
1,349,035 - CSW01_06440 0.71 +0.7
1,349,114 - CSW01_06440 0.77 -2.7
1,349,195 - CSW01_06440 0.83 -1.7
1,349,269 + CSW01_06440 0.89 -0.8
1,349,269 + CSW01_06440 0.89 +0.1
1,349,277 - CSW01_06440 0.89 +0.1
1,349,284 + +0.5
1,349,296 - -0.8
1,349,335 + +0.9
1,349,352 - +2.4
1,349,352 - -2.5
1,349,352 - -1.8
1,349,372 + -2.6
1,349,416 + +0.9
1,349,416 + +1.5
1,349,604 + -0.8
1,349,604 + +1.5
1,349,612 + +1.3
1,349,612 + +0.4
1,349,612 + -1.8
1,349,612 + +0.9
1,349,612 - -0.3
1,349,620 - -0.5
1,349,661 - CSW01_06450 0.11 -0.2
1,349,692 - CSW01_06450 0.13 -0.5
1,349,755 + CSW01_06450 0.17 -0.9
1,349,770 + CSW01_06450 0.19 +0.8
1,349,835 - CSW01_06450 0.23 -0.4
1,349,841 - CSW01_06450 0.24 -2.2
1,349,852 + CSW01_06450 0.25 -0.4
1,349,852 + CSW01_06450 0.25 +0.1
1,349,898 - CSW01_06450 0.28 -0.3
1,349,941 + CSW01_06450 0.31 +0.2
1,350,044 + CSW01_06450 0.39 +0.6
1,350,049 + CSW01_06450 0.39 +0.3
1,350,049 + CSW01_06450 0.39 +0.4
1,350,049 + CSW01_06450 0.39 -2.9
1,350,049 + CSW01_06450 0.39 -0.6
1,350,057 - CSW01_06450 0.40 -0.0
1,350,057 - CSW01_06450 0.40 +0.5
1,350,057 - CSW01_06450 0.40 +0.0
1,350,057 - CSW01_06450 0.40 +0.7
1,350,057 - CSW01_06450 0.40 +1.6
1,350,074 - CSW01_06450 0.41 -1.5
1,350,079 + CSW01_06450 0.41 -1.1
1,350,155 + CSW01_06450 0.47 -0.9
1,350,172 + CSW01_06450 0.48 -0.5
1,350,339 - CSW01_06450 0.61 -2.0
1,350,362 + CSW01_06450 0.62 +0.1
1,350,362 + CSW01_06450 0.62 -0.5
1,350,362 + CSW01_06450 0.62 -1.9
1,350,362 + CSW01_06450 0.62 -0.2
1,350,362 + CSW01_06450 0.62 +1.1
1,350,362 + CSW01_06450 0.62 +0.1
1,350,362 + CSW01_06450 0.62 -3.9
1,350,362 + CSW01_06450 0.62 -0.5
1,350,362 + CSW01_06450 0.62 -3.0
1,350,370 - CSW01_06450 0.63 -2.0
1,350,370 - CSW01_06450 0.63 -1.1
1,350,370 - CSW01_06450 0.63 +2.1
1,350,370 - CSW01_06450 0.63 -3.0
1,350,370 - CSW01_06450 0.63 +3.0
1,350,370 - CSW01_06450 0.63 +1.1
1,350,591 + CSW01_06450 0.79 -2.8
1,350,599 - CSW01_06450 0.80 +1.1
1,350,601 + CSW01_06450 0.80 +0.2
1,350,601 + CSW01_06450 0.80 +0.6
1,350,601 + CSW01_06450 0.80 +0.9
1,350,609 - CSW01_06450 0.80 +0.4
1,350,609 - CSW01_06450 0.80 -0.8
1,350,609 - CSW01_06450 0.80 -1.7
1,350,694 - CSW01_06450 0.87 +0.8
1,350,746 + +0.4
1,350,890 - -0.3
1,350,911 + -3.0
1,350,929 - CSW01_06455 0.12 +0.9
1,350,967 - CSW01_06455 0.17 +0.2
1,350,990 + CSW01_06455 0.21 -1.2
1,351,000 + CSW01_06455 0.22 +1.2
1,351,000 + CSW01_06455 0.22 -1.5
1,351,059 + CSW01_06455 0.31 +1.4
1,351,067 - CSW01_06455 0.33 +0.1
1,351,117 + CSW01_06455 0.40 +0.8
1,351,263 + CSW01_06455 0.63 +0.8
1,351,417 - CSW01_06455 0.86 +0.8
1,351,453 + +1.6
1,351,499 - +1.2
1,351,503 + +1.0
1,351,503 + -1.6
1,351,589 + CSW01_06460 0.17 +1.0
1,351,589 + CSW01_06460 0.17 +1.5
1,351,589 + CSW01_06460 0.17 -0.4
1,351,589 + CSW01_06460 0.17 -1.1
1,351,589 + CSW01_06460 0.17 -0.9
1,351,597 - CSW01_06460 0.19 +0.1
1,351,602 - CSW01_06460 0.20 -0.7
1,351,608 + CSW01_06460 0.21 +0.6
1,351,616 - CSW01_06460 0.23 -0.8
1,351,718 - CSW01_06460 0.44 +1.5
1,351,740 - CSW01_06460 0.49 -2.3
1,351,748 + CSW01_06460 0.50 -1.1
1,351,751 + CSW01_06460 0.51 +1.2
1,351,751 + CSW01_06460 0.51 +3.3
1,351,751 + CSW01_06460 0.51 -0.4
1,351,751 + CSW01_06460 0.51 +1.5
1,351,759 - CSW01_06460 0.53 -0.4
1,351,759 - CSW01_06460 0.53 +0.3
1,351,759 - CSW01_06460 0.53 -2.3
1,351,759 - CSW01_06460 0.53 +0.5
1,351,759 - CSW01_06460 0.53 -3.6
1,351,820 - CSW01_06460 0.65 +1.1

Or see this region's nucleotide sequence