Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04985

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04970 and CSW01_04975 are separated by 60 nucleotidesCSW01_04975 and CSW01_04980 are separated by 43 nucleotidesCSW01_04980 and CSW01_04985 are separated by 7 nucleotidesCSW01_04985 and CSW01_04990 are separated by 227 nucleotidesCSW01_04990 and CSW01_04995 overlap by 4 nucleotides CSW01_04970: CSW01_04970 - hypothetical protein, at 1,037,757 to 1,038,572 _04970 CSW01_04975: CSW01_04975 - transcriptional regulator, at 1,038,633 to 1,039,052 _04975 CSW01_04980: CSW01_04980 - NfeD family protein, at 1,039,096 to 1,039,545 _04980 CSW01_04985: CSW01_04985 - paraslipin, at 1,039,553 to 1,040,473 _04985 CSW01_04990: CSW01_04990 - hypothetical protein, at 1,040,701 to 1,040,907 _04990 CSW01_04995: CSW01_04995 - co-chaperone YbbN, at 1,040,904 to 1,041,824 _04995 Position (kb) 1039 1040 1041Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1038.587 kb on + strandat 1038.587 kb on + strandat 1038.587 kb on + strandat 1038.587 kb on + strandat 1038.587 kb on + strandat 1038.594 kb on + strandat 1038.678 kb on - strand, within CSW01_04975at 1038.751 kb on - strand, within CSW01_04975at 1038.816 kb on - strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.829 kb on + strand, within CSW01_04975at 1038.854 kb on - strand, within CSW01_04975at 1038.870 kb on - strand, within CSW01_04975at 1038.983 kb on - strand, within CSW01_04975at 1038.983 kb on - strand, within CSW01_04975at 1039.015 kb on - strandat 1039.037 kb on + strandat 1039.167 kb on + strand, within CSW01_04980at 1039.184 kb on + strand, within CSW01_04980at 1039.184 kb on + strand, within CSW01_04980at 1039.184 kb on + strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.193 kb on + strand, within CSW01_04980at 1039.239 kb on - strand, within CSW01_04980at 1039.278 kb on + strand, within CSW01_04980at 1039.278 kb on + strand, within CSW01_04980at 1039.286 kb on - strand, within CSW01_04980at 1039.313 kb on + strand, within CSW01_04980at 1039.463 kb on + strand, within CSW01_04980at 1039.481 kb on - strand, within CSW01_04980at 1039.495 kb on + strand, within CSW01_04980at 1039.503 kb on - strandat 1039.555 kb on + strandat 1039.688 kb on + strand, within CSW01_04985at 1039.688 kb on + strand, within CSW01_04985at 1039.696 kb on - strand, within CSW01_04985at 1039.701 kb on - strand, within CSW01_04985at 1039.725 kb on + strand, within CSW01_04985at 1039.747 kb on + strand, within CSW01_04985at 1039.755 kb on - strand, within CSW01_04985at 1039.929 kb on + strand, within CSW01_04985at 1040.002 kb on + strand, within CSW01_04985at 1040.002 kb on + strand, within CSW01_04985at 1040.010 kb on - strand, within CSW01_04985at 1040.010 kb on - strand, within CSW01_04985at 1040.018 kb on - strand, within CSW01_04985at 1040.092 kb on + strand, within CSW01_04985at 1040.099 kb on + strand, within CSW01_04985at 1040.107 kb on - strand, within CSW01_04985at 1040.125 kb on + strand, within CSW01_04985at 1040.133 kb on - strand, within CSW01_04985at 1040.194 kb on + strand, within CSW01_04985at 1040.202 kb on - strand, within CSW01_04985at 1040.305 kb on + strand, within CSW01_04985at 1040.337 kb on - strand, within CSW01_04985at 1040.342 kb on - strand, within CSW01_04985at 1040.381 kb on - strand, within CSW01_04985at 1040.404 kb on + strandat 1040.503 kb on - strandat 1040.682 kb on - strandat 1040.698 kb on + strandat 1040.737 kb on + strand, within CSW01_04990at 1040.763 kb on - strand, within CSW01_04990at 1040.905 kb on - strandat 1040.955 kb on + strandat 1040.963 kb on - strandat 1040.964 kb on - strandat 1040.968 kb on - strandat 1041.032 kb on + strand, within CSW01_04995at 1041.032 kb on + strand, within CSW01_04995at 1041.040 kb on - strand, within CSW01_04995at 1041.078 kb on + strand, within CSW01_04995at 1041.127 kb on + strand, within CSW01_04995at 1041.135 kb on - strand, within CSW01_04995at 1041.137 kb on - strand, within CSW01_04995at 1041.225 kb on - strand, within CSW01_04995at 1041.303 kb on - strand, within CSW01_04995at 1041.304 kb on + strand, within CSW01_04995at 1041.312 kb on - strand, within CSW01_04995at 1041.343 kb on + strand, within CSW01_04995at 1041.361 kb on - strand, within CSW01_04995at 1041.389 kb on + strand, within CSW01_04995

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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1,038,587 + -2.5
1,038,587 + +0.7
1,038,587 + -2.0
1,038,587 + +0.6
1,038,587 + +1.4
1,038,594 + -0.6
1,038,678 - CSW01_04975 0.11 +1.0
1,038,751 - CSW01_04975 0.28 +1.7
1,038,816 - CSW01_04975 0.44 +1.8
1,038,818 + CSW01_04975 0.44 -0.2
1,038,818 + CSW01_04975 0.44 -0.9
1,038,818 + CSW01_04975 0.44 -1.9
1,038,818 + CSW01_04975 0.44 -2.3
1,038,818 + CSW01_04975 0.44 +1.2
1,038,818 + CSW01_04975 0.44 -1.8
1,038,818 + CSW01_04975 0.44 +0.2
1,038,818 + CSW01_04975 0.44 -0.2
1,038,818 + CSW01_04975 0.44 +2.3
1,038,826 - CSW01_04975 0.46 -1.5
1,038,826 - CSW01_04975 0.46 +0.3
1,038,826 - CSW01_04975 0.46 +1.0
1,038,826 - CSW01_04975 0.46 -1.3
1,038,826 - CSW01_04975 0.46 +1.9
1,038,826 - CSW01_04975 0.46 +2.2
1,038,826 - CSW01_04975 0.46 +1.0
1,038,826 - CSW01_04975 0.46 +2.0
1,038,826 - CSW01_04975 0.46 +1.5
1,038,826 - CSW01_04975 0.46 -0.2
1,038,826 - CSW01_04975 0.46 -0.5
1,038,826 - CSW01_04975 0.46 +1.1
1,038,829 + CSW01_04975 0.47 +1.4
1,038,854 - CSW01_04975 0.53 +0.5
1,038,870 - CSW01_04975 0.56 -3.6
1,038,983 - CSW01_04975 0.83 -2.1
1,038,983 - CSW01_04975 0.83 -0.9
1,039,015 - -2.4
1,039,037 + -0.0
1,039,167 + CSW01_04980 0.16 -0.7
1,039,184 + CSW01_04980 0.20 -0.7
1,039,184 + CSW01_04980 0.20 +0.0
1,039,184 + CSW01_04980 0.20 +0.1
1,039,192 - CSW01_04980 0.21 -1.4
1,039,192 - CSW01_04980 0.21 +0.2
1,039,192 - CSW01_04980 0.21 +0.2
1,039,192 - CSW01_04980 0.21 -0.7
1,039,192 - CSW01_04980 0.21 +1.2
1,039,192 - CSW01_04980 0.21 -0.3
1,039,192 - CSW01_04980 0.21 +1.1
1,039,192 - CSW01_04980 0.21 -0.4
1,039,192 - CSW01_04980 0.21 +1.5
1,039,192 - CSW01_04980 0.21 -1.6
1,039,192 - CSW01_04980 0.21 +1.0
1,039,193 + CSW01_04980 0.22 +1.5
1,039,239 - CSW01_04980 0.32 -2.5
1,039,278 + CSW01_04980 0.40 -0.0
1,039,278 + CSW01_04980 0.40 +0.7
1,039,286 - CSW01_04980 0.42 -0.7
1,039,313 + CSW01_04980 0.48 -1.1
1,039,463 + CSW01_04980 0.82 -2.2
1,039,481 - CSW01_04980 0.86 +0.3
1,039,495 + CSW01_04980 0.89 +2.6
1,039,503 - -0.8
1,039,555 + +0.1
1,039,688 + CSW01_04985 0.15 -1.9
1,039,688 + CSW01_04985 0.15 +2.8
1,039,696 - CSW01_04985 0.16 +3.4
1,039,701 - CSW01_04985 0.16 -3.3
1,039,725 + CSW01_04985 0.19 -3.8
1,039,747 + CSW01_04985 0.21 -2.8
1,039,755 - CSW01_04985 0.22 -1.5
1,039,929 + CSW01_04985 0.41 +2.4
1,040,002 + CSW01_04985 0.49 -1.8
1,040,002 + CSW01_04985 0.49 -0.0
1,040,010 - CSW01_04985 0.50 +0.6
1,040,010 - CSW01_04985 0.50 +0.5
1,040,018 - CSW01_04985 0.50 +0.2
1,040,092 + CSW01_04985 0.59 +0.1
1,040,099 + CSW01_04985 0.59 -1.6
1,040,107 - CSW01_04985 0.60 -2.2
1,040,125 + CSW01_04985 0.62 +0.1
1,040,133 - CSW01_04985 0.63 -0.3
1,040,194 + CSW01_04985 0.70 +0.6
1,040,202 - CSW01_04985 0.70 -0.4
1,040,305 + CSW01_04985 0.82 +0.2
1,040,337 - CSW01_04985 0.85 +1.2
1,040,342 - CSW01_04985 0.86 +0.6
1,040,381 - CSW01_04985 0.90 +0.3
1,040,404 + +0.2
1,040,503 - -0.8
1,040,682 - -3.4
1,040,698 + -1.9
1,040,737 + CSW01_04990 0.17 +0.5
1,040,763 - CSW01_04990 0.30 -0.3
1,040,905 - +0.9
1,040,955 + -0.1
1,040,963 - -2.2
1,040,964 - -0.9
1,040,968 - -1.9
1,041,032 + CSW01_04995 0.14 -0.1
1,041,032 + CSW01_04995 0.14 +0.6
1,041,040 - CSW01_04995 0.15 +0.8
1,041,078 + CSW01_04995 0.19 -3.6
1,041,127 + CSW01_04995 0.24 +0.3
1,041,135 - CSW01_04995 0.25 +0.7
1,041,137 - CSW01_04995 0.25 -1.6
1,041,225 - CSW01_04995 0.35 -1.3
1,041,303 - CSW01_04995 0.43 -1.4
1,041,304 + CSW01_04995 0.43 +0.1
1,041,312 - CSW01_04995 0.44 -1.8
1,041,343 + CSW01_04995 0.48 +0.2
1,041,361 - CSW01_04995 0.50 +0.1
1,041,389 + CSW01_04995 0.53 -1.4

Or see this region's nucleotide sequence