Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04335

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04325 and CSW01_04330 are separated by 5 nucleotidesCSW01_04330 and CSW01_04335 are separated by 15 nucleotidesCSW01_04335 and CSW01_04340 are separated by 8 nucleotidesCSW01_04340 and CSW01_04345 are separated by 2 nucleotides CSW01_04325: CSW01_04325 - methyl-accepting chemotaxis protein, at 900,233 to 902,113 _04325 CSW01_04330: CSW01_04330 - accessory colonization factor AcfC, at 902,119 to 902,889 _04330 CSW01_04335: CSW01_04335 - RDD family protein, at 902,905 to 903,378 _04335 CSW01_04340: CSW01_04340 - M23 family peptidase, at 903,387 to 904,295 _04340 CSW01_04345: CSW01_04345 - accessory colonization factor AcfA, at 904,298 to 904,945 _04345 Position (kb) 902 903 904Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 901.936 kb on + strandat 901.936 kb on + strandat 901.995 kb on - strandat 902.019 kb on + strandat 902.079 kb on - strandat 902.192 kb on + strandat 902.202 kb on + strand, within CSW01_04330at 902.202 kb on + strand, within CSW01_04330at 902.202 kb on + strand, within CSW01_04330at 902.202 kb on + strand, within CSW01_04330at 902.210 kb on + strand, within CSW01_04330at 902.216 kb on + strand, within CSW01_04330at 902.216 kb on + strand, within CSW01_04330at 902.224 kb on - strand, within CSW01_04330at 902.224 kb on - strand, within CSW01_04330at 902.232 kb on + strand, within CSW01_04330at 902.348 kb on + strand, within CSW01_04330at 902.362 kb on + strand, within CSW01_04330at 902.362 kb on + strand, within CSW01_04330at 902.362 kb on + strand, within CSW01_04330at 902.362 kb on + strand, within CSW01_04330at 902.362 kb on + strand, within CSW01_04330at 902.362 kb on + strand, within CSW01_04330at 902.362 kb on + strand, within CSW01_04330at 902.362 kb on + strand, within CSW01_04330at 902.370 kb on - strand, within CSW01_04330at 902.370 kb on - strand, within CSW01_04330at 902.370 kb on - strand, within CSW01_04330at 902.370 kb on - strand, within CSW01_04330at 902.370 kb on - strand, within CSW01_04330at 902.370 kb on - strand, within CSW01_04330at 902.421 kb on + strand, within CSW01_04330at 902.475 kb on + strand, within CSW01_04330at 902.483 kb on - strand, within CSW01_04330at 902.483 kb on - strand, within CSW01_04330at 902.520 kb on - strand, within CSW01_04330at 902.530 kb on + strand, within CSW01_04330at 902.530 kb on + strand, within CSW01_04330at 902.530 kb on + strand, within CSW01_04330at 902.530 kb on + strand, within CSW01_04330at 902.530 kb on + strand, within CSW01_04330at 902.530 kb on + strand, within CSW01_04330at 902.530 kb on + strand, within CSW01_04330at 902.530 kb on + strand, within CSW01_04330at 902.530 kb on + strand, within CSW01_04330at 902.530 kb on + strand, within CSW01_04330at 902.530 kb on + strand, within CSW01_04330at 902.530 kb on + strand, within CSW01_04330at 902.530 kb on + strand, within CSW01_04330at 902.530 kb on + strand, within CSW01_04330at 902.533 kb on + strand, within CSW01_04330at 902.537 kb on + strand, within CSW01_04330at 902.537 kb on + strand, within CSW01_04330at 902.538 kb on - strand, within CSW01_04330at 902.538 kb on - strand, within CSW01_04330at 902.538 kb on - strand, within CSW01_04330at 902.538 kb on - strand, within CSW01_04330at 902.538 kb on - strand, within CSW01_04330at 902.538 kb on - strand, within CSW01_04330at 902.538 kb on - strand, within CSW01_04330at 902.538 kb on - strand, within CSW01_04330at 902.538 kb on - strand, within CSW01_04330at 902.538 kb on - strand, within CSW01_04330at 902.538 kb on - strand, within CSW01_04330at 902.538 kb on - strand, within CSW01_04330at 902.543 kb on - strand, within CSW01_04330at 902.574 kb on - strand, within CSW01_04330at 902.574 kb on - strand, within CSW01_04330at 902.640 kb on + strand, within CSW01_04330at 902.678 kb on + strand, within CSW01_04330at 902.686 kb on - strand, within CSW01_04330at 902.690 kb on + strand, within CSW01_04330at 902.690 kb on + strand, within CSW01_04330at 902.691 kb on + strand, within CSW01_04330at 902.698 kb on - strand, within CSW01_04330at 902.698 kb on - strand, within CSW01_04330at 902.698 kb on - strand, within CSW01_04330at 902.699 kb on - strand, within CSW01_04330at 902.704 kb on + strand, within CSW01_04330at 902.709 kb on + strand, within CSW01_04330at 902.709 kb on + strand, within CSW01_04330at 902.709 kb on + strand, within CSW01_04330at 902.712 kb on - strand, within CSW01_04330at 902.714 kb on + strand, within CSW01_04330at 902.717 kb on - strand, within CSW01_04330at 902.717 kb on - strand, within CSW01_04330at 902.717 kb on - strand, within CSW01_04330at 902.717 kb on - strand, within CSW01_04330at 902.717 kb on - strand, within CSW01_04330at 902.717 kb on - strand, within CSW01_04330at 902.717 kb on - strand, within CSW01_04330at 902.717 kb on - strand, within CSW01_04330at 902.717 kb on - strand, within CSW01_04330at 902.718 kb on - strand, within CSW01_04330at 902.732 kb on + strand, within CSW01_04330at 902.736 kb on - strand, within CSW01_04330at 902.739 kb on + strand, within CSW01_04330at 902.747 kb on - strand, within CSW01_04330at 902.747 kb on - strand, within CSW01_04330at 902.775 kb on + strand, within CSW01_04330at 902.780 kb on + strand, within CSW01_04330at 902.788 kb on - strand, within CSW01_04330at 902.868 kb on + strandat 902.877 kb on - strandat 902.889 kb on + strandat 902.897 kb on - strandat 902.899 kb on + strandat 902.901 kb on + strandat 902.904 kb on + strandat 902.904 kb on + strandat 902.904 kb on + strandat 902.907 kb on - strandat 902.907 kb on - strandat 902.907 kb on - strandat 902.910 kb on - strandat 902.912 kb on - strandat 902.912 kb on - strandat 902.915 kb on - strandat 902.953 kb on - strand, within CSW01_04335at 902.984 kb on + strand, within CSW01_04335at 902.984 kb on + strand, within CSW01_04335at 902.986 kb on - strand, within CSW01_04335at 902.990 kb on + strand, within CSW01_04335at 902.993 kb on - strand, within CSW01_04335at 902.995 kb on + strand, within CSW01_04335at 903.008 kb on + strand, within CSW01_04335at 903.008 kb on + strand, within CSW01_04335at 903.016 kb on - strand, within CSW01_04335at 903.016 kb on - strand, within CSW01_04335at 903.084 kb on + strand, within CSW01_04335at 903.092 kb on - strand, within CSW01_04335at 903.092 kb on - strand, within CSW01_04335at 903.342 kb on + strandat 903.563 kb on - strand, within CSW01_04340at 903.563 kb on - strand, within CSW01_04340at 903.563 kb on - strand, within CSW01_04340at 903.658 kb on + strand, within CSW01_04340at 903.706 kb on + strand, within CSW01_04340at 903.718 kb on + strand, within CSW01_04340at 903.718 kb on + strand, within CSW01_04340at 903.718 kb on + strand, within CSW01_04340at 903.723 kb on + strand, within CSW01_04340at 903.726 kb on - strand, within CSW01_04340at 903.726 kb on - strand, within CSW01_04340at 903.726 kb on - strand, within CSW01_04340at 903.726 kb on - strand, within CSW01_04340at 903.750 kb on - strand, within CSW01_04340at 903.750 kb on - strand, within CSW01_04340at 903.750 kb on - strand, within CSW01_04340at 903.750 kb on - strand, within CSW01_04340at 903.750 kb on - strand, within CSW01_04340at 903.750 kb on - strand, within CSW01_04340at 903.753 kb on - strand, within CSW01_04340at 903.763 kb on - strand, within CSW01_04340at 903.780 kb on + strand, within CSW01_04340at 903.894 kb on - strand, within CSW01_04340at 903.903 kb on + strand, within CSW01_04340at 903.974 kb on + strand, within CSW01_04340at 903.976 kb on - strand, within CSW01_04340at 904.000 kb on + strand, within CSW01_04340at 904.008 kb on - strand, within CSW01_04340at 904.029 kb on - strand, within CSW01_04340at 904.031 kb on + strand, within CSW01_04340at 904.042 kb on + strand, within CSW01_04340at 904.042 kb on + strand, within CSW01_04340at 904.052 kb on - strand, within CSW01_04340at 904.101 kb on + strand, within CSW01_04340at 904.103 kb on + strand, within CSW01_04340at 904.103 kb on + strand, within CSW01_04340at 904.108 kb on + strand, within CSW01_04340at 904.108 kb on + strand, within CSW01_04340at 904.108 kb on + strand, within CSW01_04340at 904.108 kb on + strand, within CSW01_04340at 904.108 kb on + strand, within CSW01_04340at 904.108 kb on + strand, within CSW01_04340at 904.108 kb on + strand, within CSW01_04340at 904.108 kb on + strand, within CSW01_04340at 904.108 kb on + strand, within CSW01_04340at 904.109 kb on - strand, within CSW01_04340at 904.111 kb on - strand, within CSW01_04340at 904.111 kb on - strand, within CSW01_04340at 904.114 kb on + strand, within CSW01_04340at 904.114 kb on + strand, within CSW01_04340at 904.114 kb on - strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.122 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.152 kb on + strand, within CSW01_04340at 904.153 kb on + strand, within CSW01_04340at 904.160 kb on - strand, within CSW01_04340at 904.161 kb on - strand, within CSW01_04340at 904.168 kb on - strand, within CSW01_04340at 904.304 kb on - strandat 904.310 kb on - strandat 904.310 kb on - strandat 904.338 kb on + strandat 904.338 kb on + strandat 904.338 kb on + strandat 904.338 kb on + strandat 904.338 kb on + strandat 904.346 kb on - strandat 904.346 kb on - strandat 904.361 kb on + strandat 904.369 kb on - strand, within CSW01_04345at 904.369 kb on - strand, within CSW01_04345at 904.369 kb on - strand, within CSW01_04345

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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901,936 + -0.4
901,936 + -3.6
901,995 - +0.3
902,019 + -1.8
902,079 - +0.3
902,192 + -0.4
902,202 + CSW01_04330 0.11 -3.1
902,202 + CSW01_04330 0.11 +0.8
902,202 + CSW01_04330 0.11 -0.7
902,202 + CSW01_04330 0.11 +1.7
902,210 + CSW01_04330 0.12 -2.7
902,216 + CSW01_04330 0.13 -1.8
902,216 + CSW01_04330 0.13 +0.2
902,224 - CSW01_04330 0.14 +0.3
902,224 - CSW01_04330 0.14 +0.9
902,232 + CSW01_04330 0.15 +0.7
902,348 + CSW01_04330 0.30 +0.0
902,362 + CSW01_04330 0.32 +1.3
902,362 + CSW01_04330 0.32 -0.8
902,362 + CSW01_04330 0.32 -2.2
902,362 + CSW01_04330 0.32 -0.4
902,362 + CSW01_04330 0.32 -2.6
902,362 + CSW01_04330 0.32 +0.3
902,362 + CSW01_04330 0.32 +0.2
902,362 + CSW01_04330 0.32 -0.1
902,370 - CSW01_04330 0.33 -0.7
902,370 - CSW01_04330 0.33 -2.9
902,370 - CSW01_04330 0.33 -1.0
902,370 - CSW01_04330 0.33 -3.4
902,370 - CSW01_04330 0.33 +0.7
902,370 - CSW01_04330 0.33 -2.2
902,421 + CSW01_04330 0.39 +0.1
902,475 + CSW01_04330 0.46 -3.2
902,483 - CSW01_04330 0.47 +1.6
902,483 - CSW01_04330 0.47 +1.2
902,520 - CSW01_04330 0.52 -0.9
902,530 + CSW01_04330 0.53 +1.1
902,530 + CSW01_04330 0.53 +0.6
902,530 + CSW01_04330 0.53 -1.8
902,530 + CSW01_04330 0.53 -1.9
902,530 + CSW01_04330 0.53 +0.8
902,530 + CSW01_04330 0.53 +0.3
902,530 + CSW01_04330 0.53 +0.2
902,530 + CSW01_04330 0.53 -1.9
902,530 + CSW01_04330 0.53 +0.2
902,530 + CSW01_04330 0.53 +0.6
902,530 + CSW01_04330 0.53 +2.4
902,530 + CSW01_04330 0.53 -3.7
902,530 + CSW01_04330 0.53 -1.5
902,530 + CSW01_04330 0.53 -2.2
902,533 + CSW01_04330 0.54 -3.2
902,537 + CSW01_04330 0.54 -0.2
902,537 + CSW01_04330 0.54 +0.7
902,538 - CSW01_04330 0.54 +0.0
902,538 - CSW01_04330 0.54 +1.2
902,538 - CSW01_04330 0.54 -2.0
902,538 - CSW01_04330 0.54 +1.6
902,538 - CSW01_04330 0.54 +0.4
902,538 - CSW01_04330 0.54 -3.8
902,538 - CSW01_04330 0.54 +0.0
902,538 - CSW01_04330 0.54 +1.2
902,538 - CSW01_04330 0.54 +2.6
902,538 - CSW01_04330 0.54 +0.7
902,538 - CSW01_04330 0.54 +0.8
902,538 - CSW01_04330 0.54 +0.9
902,543 - CSW01_04330 0.55 +0.3
902,574 - CSW01_04330 0.59 +0.2
902,574 - CSW01_04330 0.59 -3.0
902,640 + CSW01_04330 0.68 +0.4
902,678 + CSW01_04330 0.73 +0.0
902,686 - CSW01_04330 0.74 -0.3
902,690 + CSW01_04330 0.74 -0.1
902,690 + CSW01_04330 0.74 -3.4
902,691 + CSW01_04330 0.74 +0.5
902,698 - CSW01_04330 0.75 -0.5
902,698 - CSW01_04330 0.75 -0.9
902,698 - CSW01_04330 0.75 -1.4
902,699 - CSW01_04330 0.75 -2.0
902,704 + CSW01_04330 0.76 -2.2
902,709 + CSW01_04330 0.77 +0.5
902,709 + CSW01_04330 0.77 -3.1
902,709 + CSW01_04330 0.77 -0.8
902,712 - CSW01_04330 0.77 +0.9
902,714 + CSW01_04330 0.77 +0.8
902,717 - CSW01_04330 0.78 +0.5
902,717 - CSW01_04330 0.78 -1.0
902,717 - CSW01_04330 0.78 -2.2
902,717 - CSW01_04330 0.78 +0.5
902,717 - CSW01_04330 0.78 -1.4
902,717 - CSW01_04330 0.78 -1.8
902,717 - CSW01_04330 0.78 +0.2
902,717 - CSW01_04330 0.78 -2.1
902,717 - CSW01_04330 0.78 +1.2
902,718 - CSW01_04330 0.78 -3.1
902,732 + CSW01_04330 0.80 +0.4
902,736 - CSW01_04330 0.80 +0.1
902,739 + CSW01_04330 0.80 +0.5
902,747 - CSW01_04330 0.81 -2.3
902,747 - CSW01_04330 0.81 +0.0
902,775 + CSW01_04330 0.85 -0.0
902,780 + CSW01_04330 0.86 -2.1
902,788 - CSW01_04330 0.87 -0.0
902,868 + +0.5
902,877 - -1.2
902,889 + +1.3
902,897 - +0.1
902,899 + -1.2
902,901 + +0.2
902,904 + -0.7
902,904 + -0.9
902,904 + -3.1
902,907 - +0.7
902,907 - +1.6
902,907 - +0.4
902,910 - +0.8
902,912 - -3.9
902,912 - -0.4
902,915 - +0.1
902,953 - CSW01_04335 0.10 +0.2
902,984 + CSW01_04335 0.17 -0.1
902,984 + CSW01_04335 0.17 +1.2
902,986 - CSW01_04335 0.17 -1.3
902,990 + CSW01_04335 0.18 -2.9
902,993 - CSW01_04335 0.19 -3.8
902,995 + CSW01_04335 0.19 -1.6
903,008 + CSW01_04335 0.22 +0.7
903,008 + CSW01_04335 0.22 -0.3
903,016 - CSW01_04335 0.23 -2.9
903,016 - CSW01_04335 0.23 -2.6
903,084 + CSW01_04335 0.38 +0.3
903,092 - CSW01_04335 0.39 +0.5
903,092 - CSW01_04335 0.39 -1.6
903,342 + -0.1
903,563 - CSW01_04340 0.19 +0.2
903,563 - CSW01_04340 0.19 -0.7
903,563 - CSW01_04340 0.19 +0.0
903,658 + CSW01_04340 0.30 +0.2
903,706 + CSW01_04340 0.35 +1.3
903,718 + CSW01_04340 0.36 +0.2
903,718 + CSW01_04340 0.36 -2.7
903,718 + CSW01_04340 0.36 +1.1
903,723 + CSW01_04340 0.37 -3.1
903,726 - CSW01_04340 0.37 -3.1
903,726 - CSW01_04340 0.37 +1.7
903,726 - CSW01_04340 0.37 -0.5
903,726 - CSW01_04340 0.37 -0.8
903,750 - CSW01_04340 0.40 -0.0
903,750 - CSW01_04340 0.40 +0.2
903,750 - CSW01_04340 0.40 +0.1
903,750 - CSW01_04340 0.40 +1.1
903,750 - CSW01_04340 0.40 -2.0
903,750 - CSW01_04340 0.40 -1.0
903,753 - CSW01_04340 0.40 +0.5
903,763 - CSW01_04340 0.41 -0.6
903,780 + CSW01_04340 0.43 +0.4
903,894 - CSW01_04340 0.56 -0.7
903,903 + CSW01_04340 0.57 +1.3
903,974 + CSW01_04340 0.65 +1.1
903,976 - CSW01_04340 0.65 -2.4
904,000 + CSW01_04340 0.67 -0.3
904,008 - CSW01_04340 0.68 +0.3
904,029 - CSW01_04340 0.71 -2.5
904,031 + CSW01_04340 0.71 -0.2
904,042 + CSW01_04340 0.72 +0.0
904,042 + CSW01_04340 0.72 +0.8
904,052 - CSW01_04340 0.73 -0.6
904,101 + CSW01_04340 0.79 +0.1
904,103 + CSW01_04340 0.79 -0.2
904,103 + CSW01_04340 0.79 +1.6
904,108 + CSW01_04340 0.79 -3.4
904,108 + CSW01_04340 0.79 +1.0
904,108 + CSW01_04340 0.79 +2.0
904,108 + CSW01_04340 0.79 -0.8
904,108 + CSW01_04340 0.79 -0.1
904,108 + CSW01_04340 0.79 -4.2
904,108 + CSW01_04340 0.79 -1.8
904,108 + CSW01_04340 0.79 +1.1
904,108 + CSW01_04340 0.79 +0.4
904,109 - CSW01_04340 0.79 -0.7
904,111 - CSW01_04340 0.80 +1.3
904,111 - CSW01_04340 0.80 +0.4
904,114 + CSW01_04340 0.80 -0.1
904,114 + CSW01_04340 0.80 -0.0
904,114 - CSW01_04340 0.80 -3.9
904,119 + CSW01_04340 0.81 -0.4
904,119 + CSW01_04340 0.81 -1.0
904,119 + CSW01_04340 0.81 +1.0
904,119 + CSW01_04340 0.81 +1.3
904,119 + CSW01_04340 0.81 +1.7
904,119 + CSW01_04340 0.81 +1.8
904,119 + CSW01_04340 0.81 -2.5
904,119 + CSW01_04340 0.81 -0.4
904,119 + CSW01_04340 0.81 -4.1
904,119 + CSW01_04340 0.81 +0.0
904,119 + CSW01_04340 0.81 -0.7
904,119 + CSW01_04340 0.81 -0.4
904,119 + CSW01_04340 0.81 +1.5
904,119 + CSW01_04340 0.81 -0.2
904,119 + CSW01_04340 0.81 +1.0
904,119 + CSW01_04340 0.81 -0.8
904,119 + CSW01_04340 0.81 +1.0
904,122 - CSW01_04340 0.81 -1.2
904,127 - CSW01_04340 0.81 -0.7
904,127 - CSW01_04340 0.81 +0.0
904,127 - CSW01_04340 0.81 +0.1
904,127 - CSW01_04340 0.81 -0.4
904,127 - CSW01_04340 0.81 -1.6
904,127 - CSW01_04340 0.81 +0.6
904,127 - CSW01_04340 0.81 +0.1
904,127 - CSW01_04340 0.81 +0.7
904,127 - CSW01_04340 0.81 -0.1
904,127 - CSW01_04340 0.81 +0.5
904,127 - CSW01_04340 0.81 -0.5
904,127 - CSW01_04340 0.81 -1.2
904,127 - CSW01_04340 0.81 +0.6
904,127 - CSW01_04340 0.81 -1.0
904,127 - CSW01_04340 0.81 +1.1
904,127 - CSW01_04340 0.81 +0.4
904,152 + CSW01_04340 0.84 +0.3
904,153 + CSW01_04340 0.84 +0.4
904,160 - CSW01_04340 0.85 -1.5
904,161 - CSW01_04340 0.85 -3.0
904,168 - CSW01_04340 0.86 -0.7
904,304 - -0.6
904,310 - +1.2
904,310 - -1.2
904,338 + +0.9
904,338 + -0.5
904,338 + -1.2
904,338 + +0.4
904,338 + +1.0
904,346 - -2.0
904,346 - +1.3
904,361 + +1.2
904,369 - CSW01_04345 0.11 -2.1
904,369 - CSW01_04345 0.11 +0.4
904,369 - CSW01_04345 0.11 +1.6

Or see this region's nucleotide sequence