Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03995

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03990 and CSW01_03995 are separated by 190 nucleotidesCSW01_03995 and CSW01_04000 are separated by 311 nucleotides CSW01_03990: CSW01_03990 - chitinase, at 822,124 to 823,848 _03990 CSW01_03995: CSW01_03995 - hypothetical protein, at 824,039 to 824,632 _03995 CSW01_04000: CSW01_04000 - isochorismatase, at 824,944 to 825,825 _04000 Position (kb) 824 825Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 823.044 kb on + strand, within CSW01_03990at 823.052 kb on + strand, within CSW01_03990at 823.081 kb on + strand, within CSW01_03990at 823.169 kb on - strand, within CSW01_03990at 823.185 kb on + strand, within CSW01_03990at 823.196 kb on + strand, within CSW01_03990at 823.196 kb on + strand, within CSW01_03990at 823.203 kb on + strand, within CSW01_03990at 823.203 kb on + strand, within CSW01_03990at 823.224 kb on + strand, within CSW01_03990at 823.224 kb on + strand, within CSW01_03990at 823.224 kb on + strand, within CSW01_03990at 823.232 kb on - strand, within CSW01_03990at 823.232 kb on - strand, within CSW01_03990at 823.232 kb on - strand, within CSW01_03990at 823.232 kb on - strand, within CSW01_03990at 823.254 kb on + strand, within CSW01_03990at 823.305 kb on + strand, within CSW01_03990at 823.305 kb on + strand, within CSW01_03990at 823.305 kb on + strand, within CSW01_03990at 823.329 kb on + strand, within CSW01_03990at 823.342 kb on + strand, within CSW01_03990at 823.370 kb on + strand, within CSW01_03990at 823.385 kb on + strand, within CSW01_03990at 823.473 kb on + strand, within CSW01_03990at 823.488 kb on - strand, within CSW01_03990at 823.528 kb on + strand, within CSW01_03990at 823.555 kb on - strand, within CSW01_03990at 823.593 kb on + strand, within CSW01_03990at 823.633 kb on - strand, within CSW01_03990at 823.637 kb on + strand, within CSW01_03990at 823.693 kb on - strandat 823.731 kb on + strandat 823.777 kb on + strandat 823.777 kb on + strandat 823.787 kb on + strandat 823.790 kb on - strandat 823.795 kb on - strandat 823.795 kb on - strandat 824.028 kb on + strandat 824.033 kb on + strandat 824.041 kb on - strandat 824.053 kb on + strandat 824.058 kb on + strandat 824.104 kb on + strand, within CSW01_03995at 824.105 kb on - strand, within CSW01_03995at 824.112 kb on - strand, within CSW01_03995at 824.260 kb on - strand, within CSW01_03995at 824.265 kb on - strand, within CSW01_03995at 824.338 kb on - strand, within CSW01_03995at 824.382 kb on - strand, within CSW01_03995at 824.394 kb on - strand, within CSW01_03995at 824.566 kb on - strand, within CSW01_03995at 824.620 kb on - strandat 824.659 kb on - strandat 824.883 kb on - strandat 824.972 kb on - strandat 825.052 kb on + strand, within CSW01_04000at 825.121 kb on - strand, within CSW01_04000at 825.123 kb on + strand, within CSW01_04000at 825.123 kb on + strand, within CSW01_04000at 825.123 kb on + strand, within CSW01_04000at 825.123 kb on + strand, within CSW01_04000at 825.131 kb on - strand, within CSW01_04000at 825.131 kb on - strand, within CSW01_04000at 825.159 kb on + strand, within CSW01_04000at 825.159 kb on + strand, within CSW01_04000at 825.167 kb on - strand, within CSW01_04000at 825.167 kb on - strand, within CSW01_04000at 825.202 kb on + strand, within CSW01_04000at 825.289 kb on - strand, within CSW01_04000at 825.350 kb on - strand, within CSW01_04000at 825.350 kb on - strand, within CSW01_04000at 825.390 kb on + strand, within CSW01_04000at 825.498 kb on + strand, within CSW01_04000at 825.507 kb on - strand, within CSW01_04000at 825.569 kb on + strand, within CSW01_04000at 825.569 kb on + strand, within CSW01_04000at 825.576 kb on + strand, within CSW01_04000at 825.577 kb on - strand, within CSW01_04000at 825.577 kb on - strand, within CSW01_04000at 825.577 kb on - strand, within CSW01_04000at 825.583 kb on + strand, within CSW01_04000at 825.583 kb on + strand, within CSW01_04000at 825.591 kb on - strand, within CSW01_04000at 825.591 kb on - strand, within CSW01_04000at 825.591 kb on - strand, within CSW01_04000

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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823,044 + CSW01_03990 0.53 -0.3
823,052 + CSW01_03990 0.54 +1.3
823,081 + CSW01_03990 0.55 -2.5
823,169 - CSW01_03990 0.61 +0.4
823,185 + CSW01_03990 0.62 -2.2
823,196 + CSW01_03990 0.62 +0.7
823,196 + CSW01_03990 0.62 +0.6
823,203 + CSW01_03990 0.63 +0.1
823,203 + CSW01_03990 0.63 +1.4
823,224 + CSW01_03990 0.64 +0.3
823,224 + CSW01_03990 0.64 -0.8
823,224 + CSW01_03990 0.64 +0.4
823,232 - CSW01_03990 0.64 -2.2
823,232 - CSW01_03990 0.64 -2.7
823,232 - CSW01_03990 0.64 +0.4
823,232 - CSW01_03990 0.64 -2.0
823,254 + CSW01_03990 0.66 +0.6
823,305 + CSW01_03990 0.68 -1.9
823,305 + CSW01_03990 0.68 +0.0
823,305 + CSW01_03990 0.68 -1.3
823,329 + CSW01_03990 0.70 +0.0
823,342 + CSW01_03990 0.71 -0.5
823,370 + CSW01_03990 0.72 -0.9
823,385 + CSW01_03990 0.73 +0.4
823,473 + CSW01_03990 0.78 -0.6
823,488 - CSW01_03990 0.79 +1.0
823,528 + CSW01_03990 0.81 +1.4
823,555 - CSW01_03990 0.83 +0.4
823,593 + CSW01_03990 0.85 -2.1
823,633 - CSW01_03990 0.87 +0.4
823,637 + CSW01_03990 0.88 +0.6
823,693 - -0.7
823,731 + +1.6
823,777 + +1.0
823,777 + +0.1
823,787 + -0.6
823,790 - -2.8
823,795 - +1.1
823,795 - +1.1
824,028 + +0.1
824,033 + +0.3
824,041 - +0.2
824,053 + -0.1
824,058 + -2.0
824,104 + CSW01_03995 0.11 -0.2
824,105 - CSW01_03995 0.11 -1.3
824,112 - CSW01_03995 0.12 +0.6
824,260 - CSW01_03995 0.37 +0.9
824,265 - CSW01_03995 0.38 -0.9
824,338 - CSW01_03995 0.50 +0.3
824,382 - CSW01_03995 0.58 -0.1
824,394 - CSW01_03995 0.60 -2.7
824,566 - CSW01_03995 0.89 +0.1
824,620 - -1.1
824,659 - -0.2
824,883 - +0.8
824,972 - -0.9
825,052 + CSW01_04000 0.12 +0.0
825,121 - CSW01_04000 0.20 +0.3
825,123 + CSW01_04000 0.20 +0.1
825,123 + CSW01_04000 0.20 +1.4
825,123 + CSW01_04000 0.20 -0.7
825,123 + CSW01_04000 0.20 -0.1
825,131 - CSW01_04000 0.21 +1.2
825,131 - CSW01_04000 0.21 -0.3
825,159 + CSW01_04000 0.24 +1.6
825,159 + CSW01_04000 0.24 -1.1
825,167 - CSW01_04000 0.25 +1.0
825,167 - CSW01_04000 0.25 +0.1
825,202 + CSW01_04000 0.29 +0.9
825,289 - CSW01_04000 0.39 +0.4
825,350 - CSW01_04000 0.46 +0.1
825,350 - CSW01_04000 0.46 +1.1
825,390 + CSW01_04000 0.51 -1.4
825,498 + CSW01_04000 0.63 -0.7
825,507 - CSW01_04000 0.64 -0.0
825,569 + CSW01_04000 0.71 -0.3
825,569 + CSW01_04000 0.71 +2.4
825,576 + CSW01_04000 0.72 +0.6
825,577 - CSW01_04000 0.72 +1.2
825,577 - CSW01_04000 0.72 -1.2
825,577 - CSW01_04000 0.72 +0.2
825,583 + CSW01_04000 0.72 -3.5
825,583 + CSW01_04000 0.72 -0.1
825,591 - CSW01_04000 0.73 +1.2
825,591 - CSW01_04000 0.73 +1.8
825,591 - CSW01_04000 0.73 +1.2

Or see this region's nucleotide sequence