Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03870 and CSW01_03875 are separated by 178 nucleotides CSW01_03875 and CSW01_03880 are separated by 69 nucleotides CSW01_03880 and CSW01_03885 are separated by 26 nucleotides
CSW01_03870: CSW01_03870 - inositol monophosphatase, at 797,568 to 798,371
_03870
CSW01_03875: CSW01_03875 - tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ, at 798,550 to 799,284
_03875
CSW01_03880: CSW01_03880 - HTH-type transcriptional regulator IscR, at 799,354 to 799,920
_03880
CSW01_03885: CSW01_03885 - IscS subfamily cysteine desulfurase, at 799,947 to 801,161
_03885
Position (kb) 798
799
800 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 797.756 kb on + strand, within CSW01_03870 at 797.972 kb on - strand, within CSW01_03870 at 797.980 kb on + strand, within CSW01_03870 at 798.106 kb on + strand, within CSW01_03870 at 798.201 kb on - strand, within CSW01_03870 at 798.421 kb on - strand at 798.477 kb on + strand at 798.477 kb on + strand at 798.487 kb on - strand at 798.492 kb on - strand at 798.511 kb on - strand at 798.524 kb on + strand at 798.524 kb on + strand at 798.542 kb on - strand at 798.584 kb on + strand at 798.592 kb on - strand at 798.651 kb on + strand, within CSW01_03875 at 798.669 kb on + strand, within CSW01_03875 at 798.773 kb on + strand, within CSW01_03875 at 798.778 kb on + strand, within CSW01_03875 at 798.806 kb on + strand, within CSW01_03875 at 798.806 kb on + strand, within CSW01_03875 at 798.806 kb on + strand, within CSW01_03875 at 798.806 kb on + strand, within CSW01_03875 at 798.806 kb on + strand, within CSW01_03875 at 798.814 kb on - strand, within CSW01_03875 at 798.814 kb on - strand, within CSW01_03875 at 798.814 kb on - strand, within CSW01_03875 at 798.815 kb on + strand, within CSW01_03875 at 798.821 kb on + strand, within CSW01_03875 at 798.880 kb on + strand, within CSW01_03875 at 798.888 kb on - strand, within CSW01_03875 at 798.901 kb on - strand, within CSW01_03875 at 798.907 kb on + strand, within CSW01_03875 at 798.917 kb on + strand, within CSW01_03875 at 798.952 kb on - strand, within CSW01_03875 at 798.975 kb on - strand, within CSW01_03875 at 798.989 kb on - strand, within CSW01_03875 at 799.010 kb on + strand, within CSW01_03875 at 799.010 kb on + strand, within CSW01_03875 at 799.018 kb on - strand, within CSW01_03875 at 799.026 kb on + strand, within CSW01_03875 at 799.056 kb on + strand, within CSW01_03875 at 799.064 kb on - strand, within CSW01_03875 at 799.068 kb on + strand, within CSW01_03875 at 799.126 kb on + strand, within CSW01_03875 at 799.370 kb on + strand at 799.713 kb on + strand, within CSW01_03880 at 799.844 kb on + strand, within CSW01_03880 at 799.927 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 797,756 + CSW01_03870 0.23 -1.5 797,972 - CSW01_03870 0.50 -2.0 797,980 + CSW01_03870 0.51 +0.4 798,106 + CSW01_03870 0.67 +1.5 798,201 - CSW01_03870 0.79 -1.8 798,421 - -1.4 798,477 + +0.1 798,477 + +0.7 798,487 - +0.7 798,492 - -4.7 798,511 - +0.2 798,524 + +0.3 798,524 + +1.2 798,542 - +0.5 798,584 + -0.4 798,592 - +0.3 798,651 + CSW01_03875 0.14 -1.5 798,669 + CSW01_03875 0.16 +0.2 798,773 + CSW01_03875 0.30 -2.1 798,778 + CSW01_03875 0.31 -1.3 798,806 + CSW01_03875 0.35 -2.7 798,806 + CSW01_03875 0.35 -0.0 798,806 + CSW01_03875 0.35 -1.5 798,806 + CSW01_03875 0.35 -0.8 798,806 + CSW01_03875 0.35 -2.5 798,814 - CSW01_03875 0.36 +0.6 798,814 - CSW01_03875 0.36 -1.5 798,814 - CSW01_03875 0.36 -1.3 798,815 + CSW01_03875 0.36 +0.7 798,821 + CSW01_03875 0.37 -3.1 798,880 + CSW01_03875 0.45 +0.7 798,888 - CSW01_03875 0.46 +1.2 798,901 - CSW01_03875 0.48 +0.1 798,907 + CSW01_03875 0.49 +0.3 798,917 + CSW01_03875 0.50 +1.3 798,952 - CSW01_03875 0.55 +1.7 798,975 - CSW01_03875 0.58 +0.4 798,989 - CSW01_03875 0.60 -0.9 799,010 + CSW01_03875 0.63 -1.3 799,010 + CSW01_03875 0.63 +1.4 799,018 - CSW01_03875 0.64 -1.7 799,026 + CSW01_03875 0.65 +0.6 799,056 + CSW01_03875 0.69 +1.6 799,064 - CSW01_03875 0.70 +1.4 799,068 + CSW01_03875 0.70 -0.3 799,126 + CSW01_03875 0.78 +1.0 799,370 + -1.6 799,713 + CSW01_03880 0.63 +0.9 799,844 + CSW01_03880 0.86 +0.0 799,927 + -2.0
Or see this region's nucleotide sequence