Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03680 and CSW01_03685 are separated by 239 nucleotides CSW01_03685 and CSW01_03690 are separated by 401 nucleotides
CSW01_03680: CSW01_03680 - bifunctional chorismate mutase/prephenate dehydratase, at 753,572 to 754,747
_03680
CSW01_03685: CSW01_03685 - ribosomal subunit interface protein, at 754,987 to 755,313
_03685
CSW01_03690: CSW01_03690 - outer membrane protein assembly factor BamD, at 755,715 to 756,440
_03690
Position (kb) 754
755
756 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 754.002 kb on + strand, within CSW01_03680 at 754.094 kb on + strand, within CSW01_03680 at 754.104 kb on - strand, within CSW01_03680 at 754.116 kb on + strand, within CSW01_03680 at 754.124 kb on - strand, within CSW01_03680 at 754.171 kb on + strand, within CSW01_03680 at 754.171 kb on + strand, within CSW01_03680 at 754.174 kb on + strand, within CSW01_03680 at 754.179 kb on - strand, within CSW01_03680 at 754.183 kb on + strand, within CSW01_03680 at 754.197 kb on + strand, within CSW01_03680 at 754.197 kb on + strand, within CSW01_03680 at 754.197 kb on + strand, within CSW01_03680 at 754.197 kb on + strand, within CSW01_03680 at 754.197 kb on + strand, within CSW01_03680 at 754.197 kb on + strand, within CSW01_03680 at 754.197 kb on + strand, within CSW01_03680 at 754.200 kb on - strand, within CSW01_03680 at 754.202 kb on + strand, within CSW01_03680 at 754.205 kb on - strand, within CSW01_03680 at 754.207 kb on + strand, within CSW01_03680 at 754.207 kb on + strand, within CSW01_03680 at 754.209 kb on + strand, within CSW01_03680 at 754.209 kb on + strand, within CSW01_03680 at 754.210 kb on - strand, within CSW01_03680 at 754.246 kb on + strand, within CSW01_03680 at 754.254 kb on - strand, within CSW01_03680 at 754.259 kb on - strand, within CSW01_03680 at 754.318 kb on + strand, within CSW01_03680 at 754.353 kb on + strand, within CSW01_03680 at 754.387 kb on + strand, within CSW01_03680 at 754.395 kb on - strand, within CSW01_03680 at 754.422 kb on + strand, within CSW01_03680 at 754.430 kb on - strand, within CSW01_03680 at 754.435 kb on + strand, within CSW01_03680 at 754.435 kb on + strand, within CSW01_03680 at 754.443 kb on - strand, within CSW01_03680 at 754.443 kb on - strand, within CSW01_03680 at 754.443 kb on - strand, within CSW01_03680 at 754.443 kb on - strand, within CSW01_03680 at 754.642 kb on + strand at 754.774 kb on + strand at 754.924 kb on - strand at 754.927 kb on + strand at 754.927 kb on + strand at 754.935 kb on - strand at 754.935 kb on - strand at 755.015 kb on - strand at 755.084 kb on - strand, within CSW01_03685 at 755.098 kb on + strand, within CSW01_03685 at 755.098 kb on + strand, within CSW01_03685 at 755.098 kb on + strand, within CSW01_03685 at 755.106 kb on - strand, within CSW01_03685 at 755.131 kb on - strand, within CSW01_03685 at 755.268 kb on + strand, within CSW01_03685 at 755.329 kb on + strand at 755.329 kb on + strand at 755.337 kb on - strand at 755.350 kb on + strand at 755.358 kb on - strand at 755.358 kb on - strand at 755.358 kb on - strand at 755.358 kb on - strand at 755.358 kb on - strand at 755.516 kb on - strand at 755.722 kb on + strand at 755.730 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 754,002 + CSW01_03680 0.37 +1.1 754,094 + CSW01_03680 0.44 -2.0 754,104 - CSW01_03680 0.45 +0.7 754,116 + CSW01_03680 0.46 -2.8 754,124 - CSW01_03680 0.47 -2.4 754,171 + CSW01_03680 0.51 +0.1 754,171 + CSW01_03680 0.51 +0.3 754,174 + CSW01_03680 0.51 +0.8 754,179 - CSW01_03680 0.52 +0.7 754,183 + CSW01_03680 0.52 -2.7 754,197 + CSW01_03680 0.53 -1.7 754,197 + CSW01_03680 0.53 +1.1 754,197 + CSW01_03680 0.53 +0.0 754,197 + CSW01_03680 0.53 +0.2 754,197 + CSW01_03680 0.53 -0.9 754,197 + CSW01_03680 0.53 -0.6 754,197 + CSW01_03680 0.53 -0.3 754,200 - CSW01_03680 0.53 -1.2 754,202 + CSW01_03680 0.54 +1.0 754,205 - CSW01_03680 0.54 -0.7 754,207 + CSW01_03680 0.54 +2.7 754,207 + CSW01_03680 0.54 +2.1 754,209 + CSW01_03680 0.54 -0.4 754,209 + CSW01_03680 0.54 -0.5 754,210 - CSW01_03680 0.54 +1.8 754,246 + CSW01_03680 0.57 -0.7 754,254 - CSW01_03680 0.58 -0.0 754,259 - CSW01_03680 0.58 -2.2 754,318 + CSW01_03680 0.63 -1.5 754,353 + CSW01_03680 0.66 +0.0 754,387 + CSW01_03680 0.69 -1.2 754,395 - CSW01_03680 0.70 +1.1 754,422 + CSW01_03680 0.72 -3.2 754,430 - CSW01_03680 0.73 +0.7 754,435 + CSW01_03680 0.73 +0.6 754,435 + CSW01_03680 0.73 +0.2 754,443 - CSW01_03680 0.74 +0.5 754,443 - CSW01_03680 0.74 -2.6 754,443 - CSW01_03680 0.74 +0.4 754,443 - CSW01_03680 0.74 -3.4 754,642 + +0.6 754,774 + +1.4 754,924 - +0.5 754,927 + +0.0 754,927 + +0.6 754,935 - +0.1 754,935 - +1.0 755,015 - +0.4 755,084 - CSW01_03685 0.30 -2.0 755,098 + CSW01_03685 0.34 +0.0 755,098 + CSW01_03685 0.34 -1.4 755,098 + CSW01_03685 0.34 -2.5 755,106 - CSW01_03685 0.36 -0.8 755,131 - CSW01_03685 0.44 -1.0 755,268 + CSW01_03685 0.86 -3.4 755,329 + +0.4 755,329 + +1.2 755,337 - -0.2 755,350 + +0.0 755,358 - +1.3 755,358 - -3.0 755,358 - +0.2 755,358 - +0.8 755,358 - +1.4 755,516 - -0.1 755,722 + +0.6 755,730 - +1.0
Or see this region's nucleotide sequence