Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03605

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03595 and CSW01_03600 are separated by 252 nucleotidesCSW01_03600 and CSW01_03605 are separated by 15 nucleotidesCSW01_03605 and CSW01_03610 are separated by 23 nucleotidesCSW01_03610 and CSW01_03615 are separated by 17 nucleotides CSW01_03595: CSW01_03595 - carbon starvation protein A, at 732,542 to 734,026 _03595 CSW01_03600: CSW01_03600 - DUF2799 domain-containing protein, at 734,279 to 734,620 _03600 CSW01_03605: CSW01_03605 - sodium:proton antiporter, at 734,636 to 736,435 _03605 CSW01_03610: CSW01_03610 - N-acetylmuramic acid 6-phosphate etherase, at 736,459 to 737,382 _03610 CSW01_03615: CSW01_03615 - anhydro-N-acetylmuramic acid kinase, at 737,400 to 738,512 _03615 Position (kb) 734 735 736 737Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 733.674 kb on - strand, within CSW01_03595at 733.696 kb on - strand, within CSW01_03595at 733.723 kb on + strand, within CSW01_03595at 733.728 kb on + strand, within CSW01_03595at 733.728 kb on + strand, within CSW01_03595at 733.784 kb on - strand, within CSW01_03595at 733.809 kb on + strand, within CSW01_03595at 733.839 kb on - strand, within CSW01_03595at 733.891 kb on - strandat 734.017 kb on - strandat 734.018 kb on - strandat 734.177 kb on - strandat 734.230 kb on - strandat 734.268 kb on - strandat 734.304 kb on + strandat 734.304 kb on + strandat 734.304 kb on + strandat 734.304 kb on + strandat 734.304 kb on + strandat 734.304 kb on + strandat 734.312 kb on - strandat 734.312 kb on - strandat 734.312 kb on - strandat 734.312 kb on - strandat 734.312 kb on - strandat 734.312 kb on - strandat 734.356 kb on - strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.402 kb on + strand, within CSW01_03600at 734.405 kb on + strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.421 kb on + strand, within CSW01_03600at 734.429 kb on - strand, within CSW01_03600at 734.556 kb on + strand, within CSW01_03600at 734.556 kb on + strand, within CSW01_03600at 734.556 kb on + strand, within CSW01_03600at 734.564 kb on - strand, within CSW01_03600at 734.564 kb on - strand, within CSW01_03600at 734.564 kb on - strand, within CSW01_03600at 734.587 kb on - strandat 734.621 kb on + strandat 734.665 kb on - strandat 734.665 kb on - strandat 734.665 kb on - strandat 734.675 kb on - strandat 734.803 kb on - strandat 734.868 kb on + strand, within CSW01_03605at 734.884 kb on + strand, within CSW01_03605at 734.896 kb on + strand, within CSW01_03605at 734.896 kb on + strand, within CSW01_03605at 734.896 kb on + strand, within CSW01_03605at 734.898 kb on + strand, within CSW01_03605at 734.904 kb on - strand, within CSW01_03605at 734.904 kb on - strand, within CSW01_03605at 734.904 kb on - strand, within CSW01_03605at 734.904 kb on - strand, within CSW01_03605at 734.904 kb on - strand, within CSW01_03605at 734.906 kb on - strand, within CSW01_03605at 734.914 kb on - strand, within CSW01_03605at 734.914 kb on - strand, within CSW01_03605at 734.914 kb on - strand, within CSW01_03605at 734.914 kb on - strand, within CSW01_03605at 734.982 kb on - strand, within CSW01_03605at 735.020 kb on - strand, within CSW01_03605at 735.060 kb on + strand, within CSW01_03605at 735.060 kb on + strand, within CSW01_03605at 735.060 kb on + strand, within CSW01_03605at 735.060 kb on - strand, within CSW01_03605at 735.133 kb on + strand, within CSW01_03605at 735.139 kb on - strand, within CSW01_03605at 735.141 kb on - strand, within CSW01_03605at 735.171 kb on + strand, within CSW01_03605at 735.176 kb on + strand, within CSW01_03605at 735.176 kb on + strand, within CSW01_03605at 735.183 kb on + strand, within CSW01_03605at 735.183 kb on + strand, within CSW01_03605at 735.191 kb on - strand, within CSW01_03605at 735.191 kb on - strand, within CSW01_03605at 735.191 kb on - strand, within CSW01_03605at 735.257 kb on + strand, within CSW01_03605at 735.262 kb on + strand, within CSW01_03605at 735.265 kb on - strand, within CSW01_03605at 735.267 kb on - strand, within CSW01_03605at 735.270 kb on - strand, within CSW01_03605at 735.270 kb on - strand, within CSW01_03605at 735.309 kb on + strand, within CSW01_03605at 735.309 kb on + strand, within CSW01_03605at 735.312 kb on - strand, within CSW01_03605at 735.312 kb on - strand, within CSW01_03605at 735.312 kb on - strand, within CSW01_03605at 735.312 kb on - strand, within CSW01_03605at 735.312 kb on - strand, within CSW01_03605at 735.317 kb on - strand, within CSW01_03605at 735.319 kb on - strand, within CSW01_03605at 735.342 kb on - strand, within CSW01_03605at 735.342 kb on - strand, within CSW01_03605at 735.384 kb on + strand, within CSW01_03605at 735.385 kb on - strand, within CSW01_03605at 735.409 kb on + strand, within CSW01_03605at 735.425 kb on + strand, within CSW01_03605at 735.441 kb on - strand, within CSW01_03605at 735.462 kb on + strand, within CSW01_03605at 735.470 kb on - strand, within CSW01_03605at 735.470 kb on - strand, within CSW01_03605at 735.470 kb on - strand, within CSW01_03605at 735.475 kb on - strand, within CSW01_03605at 735.501 kb on - strand, within CSW01_03605at 735.576 kb on - strand, within CSW01_03605at 735.583 kb on + strand, within CSW01_03605at 735.595 kb on + strand, within CSW01_03605at 735.611 kb on - strand, within CSW01_03605at 735.746 kb on - strand, within CSW01_03605at 735.811 kb on + strand, within CSW01_03605at 735.819 kb on - strand, within CSW01_03605at 735.819 kb on - strand, within CSW01_03605at 735.819 kb on - strand, within CSW01_03605at 735.905 kb on - strand, within CSW01_03605at 735.914 kb on + strand, within CSW01_03605at 735.914 kb on + strand, within CSW01_03605at 735.954 kb on + strand, within CSW01_03605at 735.954 kb on + strand, within CSW01_03605at 735.962 kb on - strand, within CSW01_03605at 735.964 kb on + strand, within CSW01_03605at 735.972 kb on - strand, within CSW01_03605at 735.972 kb on - strand, within CSW01_03605at 736.017 kb on + strand, within CSW01_03605at 736.025 kb on - strand, within CSW01_03605at 736.037 kb on - strand, within CSW01_03605at 736.102 kb on + strand, within CSW01_03605at 736.103 kb on + strand, within CSW01_03605at 736.165 kb on + strand, within CSW01_03605at 736.176 kb on - strand, within CSW01_03605at 736.191 kb on - strand, within CSW01_03605at 736.338 kb on + strandat 736.338 kb on + strandat 736.346 kb on - strandat 736.367 kb on - strandat 736.395 kb on + strandat 736.448 kb on + strandat 736.481 kb on - strandat 736.496 kb on - strandat 736.535 kb on - strandat 736.560 kb on - strand, within CSW01_03610at 736.574 kb on - strand, within CSW01_03610at 736.713 kb on - strand, within CSW01_03610at 736.713 kb on - strand, within CSW01_03610at 736.756 kb on + strand, within CSW01_03610at 736.764 kb on - strand, within CSW01_03610at 736.764 kb on - strand, within CSW01_03610at 736.764 kb on - strand, within CSW01_03610at 736.880 kb on - strand, within CSW01_03610at 736.880 kb on - strand, within CSW01_03610at 736.921 kb on + strand, within CSW01_03610at 736.921 kb on + strand, within CSW01_03610at 736.921 kb on + strand, within CSW01_03610at 736.929 kb on - strand, within CSW01_03610at 736.929 kb on - strand, within CSW01_03610at 736.929 kb on - strand, within CSW01_03610at 736.944 kb on + strand, within CSW01_03610at 736.970 kb on - strand, within CSW01_03610at 736.989 kb on + strand, within CSW01_03610at 737.015 kb on - strand, within CSW01_03610at 737.094 kb on + strand, within CSW01_03610at 737.094 kb on + strand, within CSW01_03610at 737.102 kb on - strand, within CSW01_03610at 737.102 kb on - strand, within CSW01_03610at 737.120 kb on - strand, within CSW01_03610at 737.131 kb on + strand, within CSW01_03610at 737.154 kb on + strand, within CSW01_03610at 737.167 kb on - strand, within CSW01_03610at 737.250 kb on - strand, within CSW01_03610at 737.299 kb on + strandat 737.326 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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733,674 - CSW01_03595 0.76 +0.1
733,696 - CSW01_03595 0.78 -0.5
733,723 + CSW01_03595 0.80 -0.2
733,728 + CSW01_03595 0.80 +1.1
733,728 + CSW01_03595 0.80 +0.8
733,784 - CSW01_03595 0.84 -0.1
733,809 + CSW01_03595 0.85 -2.8
733,839 - CSW01_03595 0.87 +0.3
733,891 - -0.5
734,017 - -0.4
734,018 - +0.1
734,177 - -2.0
734,230 - +1.9
734,268 - -0.3
734,304 + +2.3
734,304 + +2.3
734,304 + +1.1
734,304 + -0.3
734,304 + -3.1
734,304 + -1.3
734,312 - +1.4
734,312 - -0.4
734,312 - +0.4
734,312 - -1.1
734,312 - -1.3
734,312 - +1.3
734,356 - CSW01_03600 0.23 +0.4
734,397 + CSW01_03600 0.35 +1.0
734,397 + CSW01_03600 0.35 -0.8
734,397 + CSW01_03600 0.35 +1.9
734,397 + CSW01_03600 0.35 +0.6
734,397 + CSW01_03600 0.35 -0.7
734,397 + CSW01_03600 0.35 +0.5
734,397 + CSW01_03600 0.35 -3.0
734,397 + CSW01_03600 0.35 -1.9
734,402 + CSW01_03600 0.36 +0.8
734,405 + CSW01_03600 0.37 -1.0
734,405 - CSW01_03600 0.37 +0.6
734,405 - CSW01_03600 0.37 +0.3
734,405 - CSW01_03600 0.37 +1.5
734,405 - CSW01_03600 0.37 +1.7
734,405 - CSW01_03600 0.37 -0.2
734,405 - CSW01_03600 0.37 -3.1
734,405 - CSW01_03600 0.37 +0.6
734,405 - CSW01_03600 0.37 +0.6
734,405 - CSW01_03600 0.37 -3.1
734,405 - CSW01_03600 0.37 +0.6
734,405 - CSW01_03600 0.37 -3.2
734,421 + CSW01_03600 0.42 -2.9
734,429 - CSW01_03600 0.44 -1.1
734,556 + CSW01_03600 0.81 -1.8
734,556 + CSW01_03600 0.81 +1.2
734,556 + CSW01_03600 0.81 -0.4
734,564 - CSW01_03600 0.83 -1.4
734,564 - CSW01_03600 0.83 +0.8
734,564 - CSW01_03600 0.83 +0.6
734,587 - +0.1
734,621 + +0.5
734,665 - -1.5
734,665 - +1.3
734,665 - -2.0
734,675 - -1.3
734,803 - +1.0
734,868 + CSW01_03605 0.13 +0.9
734,884 + CSW01_03605 0.14 -2.7
734,896 + CSW01_03605 0.14 +1.6
734,896 + CSW01_03605 0.14 +1.3
734,896 + CSW01_03605 0.14 +0.9
734,898 + CSW01_03605 0.15 +1.8
734,904 - CSW01_03605 0.15 -1.1
734,904 - CSW01_03605 0.15 +0.9
734,904 - CSW01_03605 0.15 +0.6
734,904 - CSW01_03605 0.15 +0.3
734,904 - CSW01_03605 0.15 -0.9
734,906 - CSW01_03605 0.15 +1.2
734,914 - CSW01_03605 0.15 -1.9
734,914 - CSW01_03605 0.15 -0.8
734,914 - CSW01_03605 0.15 +2.2
734,914 - CSW01_03605 0.15 -3.0
734,982 - CSW01_03605 0.19 -0.4
735,020 - CSW01_03605 0.21 -1.5
735,060 + CSW01_03605 0.24 +0.8
735,060 + CSW01_03605 0.24 +0.3
735,060 + CSW01_03605 0.24 +0.1
735,060 - CSW01_03605 0.24 -1.3
735,133 + CSW01_03605 0.28 +1.3
735,139 - CSW01_03605 0.28 +0.2
735,141 - CSW01_03605 0.28 +1.4
735,171 + CSW01_03605 0.30 -1.0
735,176 + CSW01_03605 0.30 +0.4
735,176 + CSW01_03605 0.30 +1.0
735,183 + CSW01_03605 0.30 +0.7
735,183 + CSW01_03605 0.30 -1.9
735,191 - CSW01_03605 0.31 +0.1
735,191 - CSW01_03605 0.31 -3.4
735,191 - CSW01_03605 0.31 -1.1
735,257 + CSW01_03605 0.34 +0.6
735,262 + CSW01_03605 0.35 -2.3
735,265 - CSW01_03605 0.35 +1.4
735,267 - CSW01_03605 0.35 -2.3
735,270 - CSW01_03605 0.35 +1.5
735,270 - CSW01_03605 0.35 -0.2
735,309 + CSW01_03605 0.37 -0.5
735,309 + CSW01_03605 0.37 +2.0
735,312 - CSW01_03605 0.38 +1.1
735,312 - CSW01_03605 0.38 -1.5
735,312 - CSW01_03605 0.38 +0.8
735,312 - CSW01_03605 0.38 +1.2
735,312 - CSW01_03605 0.38 -0.3
735,317 - CSW01_03605 0.38 +1.1
735,319 - CSW01_03605 0.38 -2.3
735,342 - CSW01_03605 0.39 -1.2
735,342 - CSW01_03605 0.39 -0.8
735,384 + CSW01_03605 0.42 -0.7
735,385 - CSW01_03605 0.42 +1.4
735,409 + CSW01_03605 0.43 +0.1
735,425 + CSW01_03605 0.44 +1.2
735,441 - CSW01_03605 0.45 +1.0
735,462 + CSW01_03605 0.46 -3.1
735,470 - CSW01_03605 0.46 -2.3
735,470 - CSW01_03605 0.46 -0.4
735,470 - CSW01_03605 0.46 -0.3
735,475 - CSW01_03605 0.47 +0.1
735,501 - CSW01_03605 0.48 -2.3
735,576 - CSW01_03605 0.52 -0.1
735,583 + CSW01_03605 0.53 -0.3
735,595 + CSW01_03605 0.53 +0.0
735,611 - CSW01_03605 0.54 -0.9
735,746 - CSW01_03605 0.62 -2.9
735,811 + CSW01_03605 0.65 -0.2
735,819 - CSW01_03605 0.66 -0.8
735,819 - CSW01_03605 0.66 -1.6
735,819 - CSW01_03605 0.66 -0.3
735,905 - CSW01_03605 0.70 +2.8
735,914 + CSW01_03605 0.71 +0.2
735,914 + CSW01_03605 0.71 +0.6
735,954 + CSW01_03605 0.73 +1.2
735,954 + CSW01_03605 0.73 -0.8
735,962 - CSW01_03605 0.74 +1.0
735,964 + CSW01_03605 0.74 +0.0
735,972 - CSW01_03605 0.74 -2.7
735,972 - CSW01_03605 0.74 +0.9
736,017 + CSW01_03605 0.77 -0.7
736,025 - CSW01_03605 0.77 +0.2
736,037 - CSW01_03605 0.78 +1.2
736,102 + CSW01_03605 0.81 -0.3
736,103 + CSW01_03605 0.81 +1.7
736,165 + CSW01_03605 0.85 +0.3
736,176 - CSW01_03605 0.86 +1.2
736,191 - CSW01_03605 0.86 -3.0
736,338 + +0.8
736,338 + +0.1
736,346 - -1.2
736,367 - -1.6
736,395 + -2.3
736,448 + +0.2
736,481 - +0.6
736,496 - -1.1
736,535 - -2.7
736,560 - CSW01_03610 0.11 +1.3
736,574 - CSW01_03610 0.12 -2.0
736,713 - CSW01_03610 0.27 +0.4
736,713 - CSW01_03610 0.27 -1.8
736,756 + CSW01_03610 0.32 +1.6
736,764 - CSW01_03610 0.33 +0.8
736,764 - CSW01_03610 0.33 -0.1
736,764 - CSW01_03610 0.33 +0.7
736,880 - CSW01_03610 0.46 +1.6
736,880 - CSW01_03610 0.46 +0.1
736,921 + CSW01_03610 0.50 +0.7
736,921 + CSW01_03610 0.50 -0.4
736,921 + CSW01_03610 0.50 +2.0
736,929 - CSW01_03610 0.51 -0.2
736,929 - CSW01_03610 0.51 -1.3
736,929 - CSW01_03610 0.51 -0.4
736,944 + CSW01_03610 0.52 +0.9
736,970 - CSW01_03610 0.55 -1.8
736,989 + CSW01_03610 0.57 +0.6
737,015 - CSW01_03610 0.60 +1.0
737,094 + CSW01_03610 0.69 +0.5
737,094 + CSW01_03610 0.69 +0.1
737,102 - CSW01_03610 0.70 +3.3
737,102 - CSW01_03610 0.70 +0.8
737,120 - CSW01_03610 0.72 -0.1
737,131 + CSW01_03610 0.73 +0.7
737,154 + CSW01_03610 0.75 +1.0
737,167 - CSW01_03610 0.77 +1.2
737,250 - CSW01_03610 0.86 +0.3
737,299 + +0.6
737,326 + -0.7

Or see this region's nucleotide sequence