Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03115

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03105 and CSW01_03110 are separated by 74 nucleotidesCSW01_03110 and CSW01_03115 are separated by 147 nucleotidesCSW01_03115 and CSW01_03120 are separated by 383 nucleotides CSW01_03105: CSW01_03105 - hypoxanthine phosphoribosyltransferase, at 612,214 to 612,747 _03105 CSW01_03110: CSW01_03110 - carbonate dehydratase, at 612,822 to 613,490 _03110 CSW01_03115: CSW01_03115 - SulP family inorganic anion transporter, at 613,638 to 615,284 _03115 CSW01_03120: CSW01_03120 - ABC transporter ATP-binding protein, at 615,668 to 616,585 _03120 Position (kb) 613 614 615 616Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 612.711 kb on + strandat 612.726 kb on + strandat 612.727 kb on + strandat 612.793 kb on - strandat 612.795 kb on + strandat 612.803 kb on - strandat 612.803 kb on - strandat 612.810 kb on - strandat 612.869 kb on - strandat 612.892 kb on + strand, within CSW01_03110at 612.900 kb on - strand, within CSW01_03110at 612.907 kb on - strand, within CSW01_03110at 612.917 kb on - strand, within CSW01_03110at 612.946 kb on - strand, within CSW01_03110at 612.947 kb on - strand, within CSW01_03110at 612.994 kb on - strand, within CSW01_03110at 613.012 kb on - strand, within CSW01_03110at 613.020 kb on + strand, within CSW01_03110at 613.020 kb on + strand, within CSW01_03110at 613.020 kb on + strand, within CSW01_03110at 613.020 kb on + strand, within CSW01_03110at 613.028 kb on - strand, within CSW01_03110at 613.028 kb on - strand, within CSW01_03110at 613.028 kb on - strand, within CSW01_03110at 613.028 kb on - strand, within CSW01_03110at 613.068 kb on + strand, within CSW01_03110at 613.103 kb on + strand, within CSW01_03110at 613.103 kb on + strand, within CSW01_03110at 613.103 kb on + strand, within CSW01_03110at 613.103 kb on + strand, within CSW01_03110at 613.111 kb on - strand, within CSW01_03110at 613.111 kb on - strand, within CSW01_03110at 613.263 kb on + strand, within CSW01_03110at 613.271 kb on - strand, within CSW01_03110at 613.323 kb on + strand, within CSW01_03110at 613.442 kb on + strandat 613.442 kb on + strandat 613.459 kb on - strandat 613.570 kb on + strandat 613.622 kb on + strandat 613.682 kb on + strandat 613.690 kb on - strandat 613.716 kb on + strandat 613.753 kb on + strandat 613.764 kb on + strandat 613.764 kb on + strandat 613.764 kb on + strandat 613.772 kb on - strandat 613.772 kb on - strandat 613.816 kb on + strand, within CSW01_03115at 613.889 kb on + strand, within CSW01_03115at 613.902 kb on - strand, within CSW01_03115at 613.902 kb on - strand, within CSW01_03115at 613.918 kb on + strand, within CSW01_03115at 613.992 kb on - strand, within CSW01_03115at 614.003 kb on - strand, within CSW01_03115at 614.005 kb on + strand, within CSW01_03115at 614.010 kb on + strand, within CSW01_03115at 614.018 kb on - strand, within CSW01_03115at 614.107 kb on - strand, within CSW01_03115at 614.306 kb on - strand, within CSW01_03115at 614.306 kb on - strand, within CSW01_03115at 614.321 kb on - strand, within CSW01_03115at 614.387 kb on - strand, within CSW01_03115at 614.396 kb on + strand, within CSW01_03115at 614.404 kb on - strand, within CSW01_03115at 614.443 kb on + strand, within CSW01_03115at 614.480 kb on - strand, within CSW01_03115at 614.557 kb on + strand, within CSW01_03115at 614.592 kb on - strand, within CSW01_03115at 614.664 kb on + strand, within CSW01_03115at 614.664 kb on + strand, within CSW01_03115at 614.669 kb on + strand, within CSW01_03115at 614.682 kb on - strand, within CSW01_03115at 614.694 kb on - strand, within CSW01_03115at 614.694 kb on - strand, within CSW01_03115at 614.767 kb on + strand, within CSW01_03115at 614.767 kb on + strand, within CSW01_03115at 614.812 kb on + strand, within CSW01_03115at 614.812 kb on + strand, within CSW01_03115at 614.812 kb on + strand, within CSW01_03115at 614.812 kb on + strand, within CSW01_03115at 614.812 kb on + strand, within CSW01_03115at 614.820 kb on - strand, within CSW01_03115at 614.820 kb on - strand, within CSW01_03115at 614.820 kb on - strand, within CSW01_03115at 614.850 kb on + strand, within CSW01_03115at 614.850 kb on + strand, within CSW01_03115at 614.885 kb on - strand, within CSW01_03115at 614.898 kb on + strand, within CSW01_03115at 614.926 kb on - strand, within CSW01_03115at 614.938 kb on - strand, within CSW01_03115at 614.950 kb on - strand, within CSW01_03115at 614.961 kb on + strand, within CSW01_03115at 614.961 kb on - strand, within CSW01_03115at 614.966 kb on + strand, within CSW01_03115at 614.985 kb on - strand, within CSW01_03115at 615.026 kb on + strand, within CSW01_03115at 615.031 kb on - strand, within CSW01_03115at 615.149 kb on + strandat 615.202 kb on - strandat 615.236 kb on - strandat 615.272 kb on + strandat 615.280 kb on - strandat 615.280 kb on - strandat 615.362 kb on - strandat 615.389 kb on + strandat 615.397 kb on - strandat 615.444 kb on + strandat 615.658 kb on + strandat 615.675 kb on - strandat 615.738 kb on + strandat 615.740 kb on - strandat 615.772 kb on + strand, within CSW01_03120at 615.778 kb on - strand, within CSW01_03120at 615.780 kb on - strand, within CSW01_03120at 615.804 kb on + strand, within CSW01_03120at 615.829 kb on + strand, within CSW01_03120at 615.862 kb on - strand, within CSW01_03120at 616.009 kb on - strand, within CSW01_03120at 616.113 kb on + strand, within CSW01_03120at 616.185 kb on - strand, within CSW01_03120at 616.185 kb on - strand, within CSW01_03120

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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612,711 + -0.2
612,726 + -2.8
612,727 + -1.4
612,793 - +0.3
612,795 + +1.8
612,803 - -1.4
612,803 - +0.5
612,810 - +0.1
612,869 - -1.0
612,892 + CSW01_03110 0.10 +0.0
612,900 - CSW01_03110 0.12 -0.5
612,907 - CSW01_03110 0.13 +0.8
612,917 - CSW01_03110 0.14 -2.0
612,946 - CSW01_03110 0.19 -3.9
612,947 - CSW01_03110 0.19 +0.7
612,994 - CSW01_03110 0.26 -0.5
613,012 - CSW01_03110 0.28 +0.0
613,020 + CSW01_03110 0.30 +0.9
613,020 + CSW01_03110 0.30 +0.3
613,020 + CSW01_03110 0.30 +0.5
613,020 + CSW01_03110 0.30 +2.3
613,028 - CSW01_03110 0.31 -2.3
613,028 - CSW01_03110 0.31 -1.1
613,028 - CSW01_03110 0.31 +0.8
613,028 - CSW01_03110 0.31 +0.7
613,068 + CSW01_03110 0.37 +0.7
613,103 + CSW01_03110 0.42 -3.9
613,103 + CSW01_03110 0.42 -2.4
613,103 + CSW01_03110 0.42 -3.6
613,103 + CSW01_03110 0.42 +1.0
613,111 - CSW01_03110 0.43 +0.5
613,111 - CSW01_03110 0.43 +1.0
613,263 + CSW01_03110 0.66 -0.6
613,271 - CSW01_03110 0.67 +0.2
613,323 + CSW01_03110 0.75 +0.8
613,442 + +0.8
613,442 + -0.3
613,459 - -0.1
613,570 + +0.5
613,622 + +0.7
613,682 + -3.3
613,690 - +0.6
613,716 + +0.8
613,753 + -1.1
613,764 + +0.6
613,764 + +0.5
613,764 + -1.8
613,772 - +1.3
613,772 - -2.8
613,816 + CSW01_03115 0.11 -0.1
613,889 + CSW01_03115 0.15 -3.2
613,902 - CSW01_03115 0.16 -4.1
613,902 - CSW01_03115 0.16 +0.9
613,918 + CSW01_03115 0.17 -3.0
613,992 - CSW01_03115 0.21 -1.7
614,003 - CSW01_03115 0.22 +0.8
614,005 + CSW01_03115 0.22 +0.9
614,010 + CSW01_03115 0.23 -3.4
614,018 - CSW01_03115 0.23 +0.5
614,107 - CSW01_03115 0.28 -2.7
614,306 - CSW01_03115 0.41 -0.7
614,306 - CSW01_03115 0.41 -2.1
614,321 - CSW01_03115 0.41 +2.5
614,387 - CSW01_03115 0.45 +0.5
614,396 + CSW01_03115 0.46 +0.7
614,404 - CSW01_03115 0.47 -1.5
614,443 + CSW01_03115 0.49 -0.6
614,480 - CSW01_03115 0.51 -1.0
614,557 + CSW01_03115 0.56 -1.5
614,592 - CSW01_03115 0.58 -0.1
614,664 + CSW01_03115 0.62 +1.7
614,664 + CSW01_03115 0.62 -1.6
614,669 + CSW01_03115 0.63 +0.7
614,682 - CSW01_03115 0.63 -0.7
614,694 - CSW01_03115 0.64 -2.4
614,694 - CSW01_03115 0.64 -2.4
614,767 + CSW01_03115 0.69 +2.1
614,767 + CSW01_03115 0.69 +0.4
614,812 + CSW01_03115 0.71 +0.3
614,812 + CSW01_03115 0.71 +1.0
614,812 + CSW01_03115 0.71 +1.0
614,812 + CSW01_03115 0.71 -2.6
614,812 + CSW01_03115 0.71 -2.2
614,820 - CSW01_03115 0.72 +1.0
614,820 - CSW01_03115 0.72 -2.9
614,820 - CSW01_03115 0.72 -2.3
614,850 + CSW01_03115 0.74 +1.1
614,850 + CSW01_03115 0.74 -1.6
614,885 - CSW01_03115 0.76 -4.6
614,898 + CSW01_03115 0.77 -1.2
614,926 - CSW01_03115 0.78 -3.0
614,938 - CSW01_03115 0.79 -1.4
614,950 - CSW01_03115 0.80 +0.3
614,961 + CSW01_03115 0.80 -1.1
614,961 - CSW01_03115 0.80 -0.2
614,966 + CSW01_03115 0.81 -2.6
614,985 - CSW01_03115 0.82 +1.6
615,026 + CSW01_03115 0.84 -1.3
615,031 - CSW01_03115 0.85 +0.5
615,149 + -3.1
615,202 - -1.1
615,236 - -1.3
615,272 + -0.2
615,280 - -2.4
615,280 - +0.7
615,362 - -1.3
615,389 + -0.0
615,397 - -0.0
615,444 + -3.5
615,658 + +0.3
615,675 - -0.6
615,738 + -3.0
615,740 - +0.2
615,772 + CSW01_03120 0.11 -0.6
615,778 - CSW01_03120 0.12 +0.0
615,780 - CSW01_03120 0.12 -2.6
615,804 + CSW01_03120 0.15 -0.5
615,829 + CSW01_03120 0.18 -1.3
615,862 - CSW01_03120 0.21 +0.0
616,009 - CSW01_03120 0.37 +1.2
616,113 + CSW01_03120 0.48 -1.1
616,185 - CSW01_03120 0.56 -1.7
616,185 - CSW01_03120 0.56 +1.6

Or see this region's nucleotide sequence