Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02960

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02955 and CSW01_02960 overlap by 7 nucleotidesCSW01_02960 and CSW01_02965 are separated by 6 nucleotides CSW01_02955: CSW01_02955 - NADP-dependent oxidoreductase, at 584,443 to 585,393 _02955 CSW01_02960: CSW01_02960 - DedA family protein, at 585,387 to 585,848 _02960 CSW01_02965: CSW01_02965 - insulinase family protein, at 585,855 to 588,713 _02965 Position (kb) 585 586Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 584.439 kb on - strandat 584.470 kb on - strandat 584.593 kb on + strand, within CSW01_02955at 584.593 kb on + strand, within CSW01_02955at 584.593 kb on + strand, within CSW01_02955at 584.601 kb on - strand, within CSW01_02955at 584.601 kb on - strand, within CSW01_02955at 584.601 kb on - strand, within CSW01_02955at 584.693 kb on + strand, within CSW01_02955at 584.693 kb on + strand, within CSW01_02955at 584.693 kb on + strand, within CSW01_02955at 584.693 kb on + strand, within CSW01_02955at 584.701 kb on - strand, within CSW01_02955at 584.706 kb on + strand, within CSW01_02955at 584.714 kb on - strand, within CSW01_02955at 584.768 kb on - strand, within CSW01_02955at 584.840 kb on - strand, within CSW01_02955at 584.854 kb on + strand, within CSW01_02955at 584.860 kb on + strand, within CSW01_02955at 584.868 kb on - strand, within CSW01_02955at 584.896 kb on + strand, within CSW01_02955at 584.926 kb on + strand, within CSW01_02955at 584.934 kb on - strand, within CSW01_02955at 584.976 kb on - strand, within CSW01_02955at 585.057 kb on + strand, within CSW01_02955at 585.149 kb on + strand, within CSW01_02955at 585.149 kb on + strand, within CSW01_02955at 585.180 kb on - strand, within CSW01_02955at 585.211 kb on + strand, within CSW01_02955at 585.231 kb on + strand, within CSW01_02955at 585.244 kb on - strand, within CSW01_02955at 585.246 kb on + strand, within CSW01_02955at 585.246 kb on + strand, within CSW01_02955at 585.254 kb on - strand, within CSW01_02955at 585.261 kb on + strand, within CSW01_02955at 585.261 kb on + strand, within CSW01_02955at 585.272 kb on + strand, within CSW01_02955at 585.272 kb on + strand, within CSW01_02955at 585.272 kb on + strand, within CSW01_02955at 585.303 kb on + strandat 585.313 kb on + strandat 585.313 kb on - strandat 585.313 kb on - strandat 585.315 kb on + strandat 585.321 kb on - strandat 585.321 kb on - strandat 585.321 kb on - strandat 585.323 kb on - strandat 585.323 kb on - strandat 585.331 kb on + strandat 585.332 kb on + strandat 585.332 kb on + strandat 585.340 kb on - strandat 585.350 kb on - strandat 585.419 kb on + strandat 585.444 kb on + strand, within CSW01_02960at 585.474 kb on - strand, within CSW01_02960at 585.476 kb on - strand, within CSW01_02960at 585.476 kb on - strand, within CSW01_02960at 585.507 kb on - strand, within CSW01_02960at 585.515 kb on + strand, within CSW01_02960at 585.523 kb on - strand, within CSW01_02960at 585.613 kb on + strand, within CSW01_02960at 585.665 kb on + strand, within CSW01_02960at 585.724 kb on - strand, within CSW01_02960at 585.731 kb on + strand, within CSW01_02960at 585.742 kb on - strand, within CSW01_02960at 585.744 kb on - strand, within CSW01_02960at 585.796 kb on + strand, within CSW01_02960at 585.804 kb on - strandat 585.806 kb on + strandat 585.814 kb on - strandat 585.830 kb on + strandat 585.830 kb on + strandat 585.830 kb on + strandat 585.838 kb on - strandat 585.838 kb on - strandat 585.838 kb on - strandat 585.838 kb on - strandat 585.838 kb on - strandat 585.838 kb on - strandat 585.842 kb on + strandat 585.850 kb on - strandat 585.850 kb on - strandat 585.850 kb on - strandat 585.935 kb on + strandat 585.974 kb on + strandat 585.997 kb on - strandat 586.024 kb on - strandat 586.168 kb on + strand, within CSW01_02965at 586.168 kb on + strand, within CSW01_02965at 586.168 kb on + strand, within CSW01_02965at 586.168 kb on + strand, within CSW01_02965at 586.176 kb on - strand, within CSW01_02965at 586.176 kb on - strand, within CSW01_02965at 586.176 kb on - strand, within CSW01_02965at 586.375 kb on - strand, within CSW01_02965at 586.397 kb on + strand, within CSW01_02965at 586.466 kb on + strand, within CSW01_02965at 586.466 kb on + strand, within CSW01_02965at 586.466 kb on + strand, within CSW01_02965at 586.466 kb on + strand, within CSW01_02965at 586.466 kb on + strand, within CSW01_02965at 586.466 kb on + strand, within CSW01_02965at 586.466 kb on + strand, within CSW01_02965at 586.466 kb on + strand, within CSW01_02965at 586.466 kb on + strand, within CSW01_02965at 586.474 kb on - strand, within CSW01_02965at 586.474 kb on - strand, within CSW01_02965at 586.474 kb on - strand, within CSW01_02965at 586.474 kb on - strand, within CSW01_02965at 586.474 kb on - strand, within CSW01_02965at 586.474 kb on - strand, within CSW01_02965at 586.474 kb on - strand, within CSW01_02965at 586.474 kb on - strand, within CSW01_02965at 586.500 kb on + strand, within CSW01_02965at 586.579 kb on - strand, within CSW01_02965at 586.607 kb on - strand, within CSW01_02965at 586.638 kb on + strand, within CSW01_02965at 586.739 kb on + strand, within CSW01_02965at 586.739 kb on + strand, within CSW01_02965at 586.747 kb on - strand, within CSW01_02965at 586.768 kb on - strand, within CSW01_02965at 586.794 kb on + strand, within CSW01_02965at 586.794 kb on + strand, within CSW01_02965at 586.794 kb on + strand, within CSW01_02965at 586.794 kb on + strand, within CSW01_02965at 586.802 kb on - strand, within CSW01_02965at 586.802 kb on - strand, within CSW01_02965at 586.806 kb on + strand, within CSW01_02965at 586.806 kb on + strand, within CSW01_02965at 586.806 kb on + strand, within CSW01_02965at 586.806 kb on + strand, within CSW01_02965at 586.814 kb on - strand, within CSW01_02965at 586.837 kb on + strand, within CSW01_02965at 586.845 kb on - strand, within CSW01_02965at 586.845 kb on - strand, within CSW01_02965

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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584,439 - -1.4
584,470 - +0.2
584,593 + CSW01_02955 0.16 -1.8
584,593 + CSW01_02955 0.16 +0.4
584,593 + CSW01_02955 0.16 +1.3
584,601 - CSW01_02955 0.17 +1.3
584,601 - CSW01_02955 0.17 +0.7
584,601 - CSW01_02955 0.17 +0.6
584,693 + CSW01_02955 0.26 -2.9
584,693 + CSW01_02955 0.26 +0.3
584,693 + CSW01_02955 0.26 +0.8
584,693 + CSW01_02955 0.26 +0.5
584,701 - CSW01_02955 0.27 +0.8
584,706 + CSW01_02955 0.28 -2.4
584,714 - CSW01_02955 0.28 +1.7
584,768 - CSW01_02955 0.34 +0.1
584,840 - CSW01_02955 0.42 -2.6
584,854 + CSW01_02955 0.43 -4.0
584,860 + CSW01_02955 0.44 +1.7
584,868 - CSW01_02955 0.45 -0.7
584,896 + CSW01_02955 0.48 +0.4
584,926 + CSW01_02955 0.51 +0.5
584,934 - CSW01_02955 0.52 -0.2
584,976 - CSW01_02955 0.56 -2.9
585,057 + CSW01_02955 0.65 -2.4
585,149 + CSW01_02955 0.74 -0.1
585,149 + CSW01_02955 0.74 +1.9
585,180 - CSW01_02955 0.77 -0.5
585,211 + CSW01_02955 0.81 -3.4
585,231 + CSW01_02955 0.83 +0.9
585,244 - CSW01_02955 0.84 -0.6
585,246 + CSW01_02955 0.84 +0.6
585,246 + CSW01_02955 0.84 -0.6
585,254 - CSW01_02955 0.85 -3.4
585,261 + CSW01_02955 0.86 -0.3
585,261 + CSW01_02955 0.86 +1.4
585,272 + CSW01_02955 0.87 -0.7
585,272 + CSW01_02955 0.87 +0.6
585,272 + CSW01_02955 0.87 -0.6
585,303 + +1.4
585,313 + -3.6
585,313 - +1.5
585,313 - +0.5
585,315 + -0.5
585,321 - -2.0
585,321 - +0.4
585,321 - -1.9
585,323 - +0.3
585,323 - +2.9
585,331 + +1.1
585,332 + +1.7
585,332 + -1.6
585,340 - +0.4
585,350 - -0.5
585,419 + +0.0
585,444 + CSW01_02960 0.12 +0.8
585,474 - CSW01_02960 0.19 -1.7
585,476 - CSW01_02960 0.19 -2.0
585,476 - CSW01_02960 0.19 -0.6
585,507 - CSW01_02960 0.26 -4.1
585,515 + CSW01_02960 0.28 +0.9
585,523 - CSW01_02960 0.29 +0.5
585,613 + CSW01_02960 0.49 -2.1
585,665 + CSW01_02960 0.60 +0.2
585,724 - CSW01_02960 0.73 +0.1
585,731 + CSW01_02960 0.74 -0.7
585,742 - CSW01_02960 0.77 +0.8
585,744 - CSW01_02960 0.77 +1.4
585,796 + CSW01_02960 0.89 -0.9
585,804 - +1.1
585,806 + -3.5
585,814 - -0.5
585,830 + -0.6
585,830 + -0.8
585,830 + +0.4
585,838 - +1.5
585,838 - +1.6
585,838 - -0.4
585,838 - -3.0
585,838 - +0.6
585,838 - -0.6
585,842 + -2.6
585,850 - -0.4
585,850 - +2.4
585,850 - +0.6
585,935 + -0.9
585,974 + +1.1
585,997 - -3.4
586,024 - -0.2
586,168 + CSW01_02965 0.11 +1.5
586,168 + CSW01_02965 0.11 -3.4
586,168 + CSW01_02965 0.11 -1.4
586,168 + CSW01_02965 0.11 +1.3
586,176 - CSW01_02965 0.11 -1.6
586,176 - CSW01_02965 0.11 -1.0
586,176 - CSW01_02965 0.11 -0.6
586,375 - CSW01_02965 0.18 -1.4
586,397 + CSW01_02965 0.19 -1.4
586,466 + CSW01_02965 0.21 -0.1
586,466 + CSW01_02965 0.21 +1.0
586,466 + CSW01_02965 0.21 -0.1
586,466 + CSW01_02965 0.21 +0.1
586,466 + CSW01_02965 0.21 -1.9
586,466 + CSW01_02965 0.21 -1.4
586,466 + CSW01_02965 0.21 +1.0
586,466 + CSW01_02965 0.21 +0.6
586,466 + CSW01_02965 0.21 +0.5
586,474 - CSW01_02965 0.22 -3.0
586,474 - CSW01_02965 0.22 +0.2
586,474 - CSW01_02965 0.22 -2.7
586,474 - CSW01_02965 0.22 -1.3
586,474 - CSW01_02965 0.22 -0.2
586,474 - CSW01_02965 0.22 +0.5
586,474 - CSW01_02965 0.22 +0.2
586,474 - CSW01_02965 0.22 -0.3
586,500 + CSW01_02965 0.23 -0.2
586,579 - CSW01_02965 0.25 -1.9
586,607 - CSW01_02965 0.26 -1.7
586,638 + CSW01_02965 0.27 -3.3
586,739 + CSW01_02965 0.31 +0.0
586,739 + CSW01_02965 0.31 -0.0
586,747 - CSW01_02965 0.31 +1.5
586,768 - CSW01_02965 0.32 +0.9
586,794 + CSW01_02965 0.33 -0.2
586,794 + CSW01_02965 0.33 +0.2
586,794 + CSW01_02965 0.33 +1.0
586,794 + CSW01_02965 0.33 -3.1
586,802 - CSW01_02965 0.33 -1.6
586,802 - CSW01_02965 0.33 +1.3
586,806 + CSW01_02965 0.33 -1.3
586,806 + CSW01_02965 0.33 -1.4
586,806 + CSW01_02965 0.33 -3.0
586,806 + CSW01_02965 0.33 -0.3
586,814 - CSW01_02965 0.34 +3.9
586,837 + CSW01_02965 0.34 -2.3
586,845 - CSW01_02965 0.35 -2.3
586,845 - CSW01_02965 0.35 -0.5

Or see this region's nucleotide sequence