Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02875

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02865 and CSW01_02870 are separated by 166 nucleotidesCSW01_02870 and CSW01_02875 are separated by 133 nucleotidesCSW01_02875 and CSW01_02880 are separated by 132 nucleotidesCSW01_02880 and CSW01_02885 are separated by 172 nucleotides CSW01_02865: CSW01_02865 - sulfate/thiosulfate import ATP-binding protein CysA, at 571,500 to 572,630 _02865 CSW01_02870: CSW01_02870 - CinA family protein, at 572,797 to 573,303 _02870 CSW01_02875: CSW01_02875 - DNA recombination/repair protein RecA, at 573,437 to 574,501 _02875 CSW01_02880: CSW01_02880 - regulatory protein RecX, at 574,634 to 575,092 _02880 CSW01_02885: CSW01_02885 - alanine--tRNA ligase, at 575,265 to 577,847 _02885 Position (kb) 573 574 575Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 572.449 kb on + strand, within CSW01_02865at 572.449 kb on + strand, within CSW01_02865at 572.449 kb on + strand, within CSW01_02865at 572.457 kb on - strand, within CSW01_02865at 572.457 kb on - strand, within CSW01_02865at 572.457 kb on - strand, within CSW01_02865at 572.457 kb on - strand, within CSW01_02865at 572.514 kb on + strand, within CSW01_02865at 572.522 kb on - strandat 572.562 kb on + strandat 572.580 kb on + strandat 572.580 kb on + strandat 572.610 kb on + strandat 572.618 kb on - strandat 572.646 kb on + strandat 572.826 kb on + strandat 572.834 kb on - strandat 572.857 kb on + strand, within CSW01_02870at 572.865 kb on - strand, within CSW01_02870at 572.882 kb on - strand, within CSW01_02870at 572.890 kb on + strand, within CSW01_02870at 572.890 kb on + strand, within CSW01_02870at 572.905 kb on - strand, within CSW01_02870at 572.933 kb on + strand, within CSW01_02870at 572.995 kb on - strand, within CSW01_02870at 573.043 kb on - strand, within CSW01_02870at 573.043 kb on - strand, within CSW01_02870at 573.053 kb on - strand, within CSW01_02870at 573.075 kb on + strand, within CSW01_02870at 573.077 kb on - strand, within CSW01_02870at 573.088 kb on + strand, within CSW01_02870at 573.169 kb on + strand, within CSW01_02870at 573.169 kb on + strand, within CSW01_02870at 573.169 kb on + strand, within CSW01_02870at 573.177 kb on - strand, within CSW01_02870at 573.177 kb on - strand, within CSW01_02870at 573.177 kb on - strand, within CSW01_02870at 573.177 kb on - strand, within CSW01_02870at 573.183 kb on - strand, within CSW01_02870at 573.185 kb on + strand, within CSW01_02870at 573.200 kb on + strand, within CSW01_02870at 573.201 kb on + strand, within CSW01_02870at 573.202 kb on - strand, within CSW01_02870at 573.235 kb on + strand, within CSW01_02870at 573.244 kb on - strand, within CSW01_02870at 573.288 kb on - strandat 573.367 kb on + strandat 573.395 kb on - strandat 573.410 kb on + strandat 573.432 kb on + strandat 573.511 kb on - strandat 573.521 kb on + strandat 573.529 kb on - strandat 573.691 kb on + strand, within CSW01_02875at 573.692 kb on + strand, within CSW01_02875at 573.692 kb on + strand, within CSW01_02875at 573.692 kb on + strand, within CSW01_02875at 573.700 kb on - strand, within CSW01_02875at 573.700 kb on - strand, within CSW01_02875at 573.832 kb on - strand, within CSW01_02875at 573.835 kb on + strand, within CSW01_02875at 573.843 kb on - strand, within CSW01_02875at 573.857 kb on + strand, within CSW01_02875at 573.965 kb on - strand, within CSW01_02875at 573.993 kb on - strand, within CSW01_02875at 574.111 kb on - strand, within CSW01_02875at 574.203 kb on - strand, within CSW01_02875at 574.232 kb on + strand, within CSW01_02875at 574.232 kb on + strand, within CSW01_02875at 574.232 kb on + strand, within CSW01_02875at 574.232 kb on + strand, within CSW01_02875at 574.240 kb on - strand, within CSW01_02875at 574.255 kb on + strand, within CSW01_02875at 574.260 kb on + strand, within CSW01_02875at 574.268 kb on - strand, within CSW01_02875at 574.308 kb on + strand, within CSW01_02875at 574.414 kb on + strandat 574.495 kb on + strandat 574.523 kb on + strandat 574.592 kb on + strandat 574.637 kb on + strandat 574.638 kb on + strandat 574.676 kb on + strandat 574.676 kb on + strandat 574.786 kb on + strand, within CSW01_02880at 574.817 kb on - strand, within CSW01_02880at 574.848 kb on - strand, within CSW01_02880at 574.848 kb on - strand, within CSW01_02880at 574.848 kb on - strand, within CSW01_02880at 574.850 kb on + strand, within CSW01_02880at 574.863 kb on - strand, within CSW01_02880at 574.926 kb on + strand, within CSW01_02880at 574.945 kb on + strand, within CSW01_02880at 575.030 kb on - strand, within CSW01_02880at 575.051 kb on - strandat 575.066 kb on + strandat 575.075 kb on + strandat 575.083 kb on - strandat 575.096 kb on + strandat 575.104 kb on - strandat 575.142 kb on - strandat 575.189 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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572,449 + CSW01_02865 0.84 -0.5
572,449 + CSW01_02865 0.84 +1.8
572,449 + CSW01_02865 0.84 -0.2
572,457 - CSW01_02865 0.85 -2.4
572,457 - CSW01_02865 0.85 -2.4
572,457 - CSW01_02865 0.85 -2.2
572,457 - CSW01_02865 0.85 +2.0
572,514 + CSW01_02865 0.90 +1.7
572,522 - +1.1
572,562 + -0.6
572,580 + +0.5
572,580 + +0.6
572,610 + -0.8
572,618 - +1.2
572,646 + +0.5
572,826 + -0.6
572,834 - +1.1
572,857 + CSW01_02870 0.12 +0.1
572,865 - CSW01_02870 0.13 -2.4
572,882 - CSW01_02870 0.17 +0.1
572,890 + CSW01_02870 0.18 -0.5
572,890 + CSW01_02870 0.18 -2.0
572,905 - CSW01_02870 0.21 -2.6
572,933 + CSW01_02870 0.27 -1.6
572,995 - CSW01_02870 0.39 +0.3
573,043 - CSW01_02870 0.49 +0.7
573,043 - CSW01_02870 0.49 -0.2
573,053 - CSW01_02870 0.50 +0.9
573,075 + CSW01_02870 0.55 +0.6
573,077 - CSW01_02870 0.55 +0.7
573,088 + CSW01_02870 0.57 +2.0
573,169 + CSW01_02870 0.73 -1.3
573,169 + CSW01_02870 0.73 -2.7
573,169 + CSW01_02870 0.73 +1.5
573,177 - CSW01_02870 0.75 +0.7
573,177 - CSW01_02870 0.75 -1.6
573,177 - CSW01_02870 0.75 -0.2
573,177 - CSW01_02870 0.75 +0.1
573,183 - CSW01_02870 0.76 -2.7
573,185 + CSW01_02870 0.77 +1.4
573,200 + CSW01_02870 0.79 -0.3
573,201 + CSW01_02870 0.80 +1.1
573,202 - CSW01_02870 0.80 -0.8
573,235 + CSW01_02870 0.86 -0.9
573,244 - CSW01_02870 0.88 +1.0
573,288 - -2.1
573,367 + -3.3
573,395 - +1.2
573,410 + -1.5
573,432 + -2.9
573,511 - -2.9
573,521 + -0.3
573,529 - -1.1
573,691 + CSW01_02875 0.24 -0.5
573,692 + CSW01_02875 0.24 -2.9
573,692 + CSW01_02875 0.24 +1.8
573,692 + CSW01_02875 0.24 -2.0
573,700 - CSW01_02875 0.25 -2.1
573,700 - CSW01_02875 0.25 -0.3
573,832 - CSW01_02875 0.37 -0.9
573,835 + CSW01_02875 0.37 -2.6
573,843 - CSW01_02875 0.38 -3.0
573,857 + CSW01_02875 0.39 +1.0
573,965 - CSW01_02875 0.50 -0.9
573,993 - CSW01_02875 0.52 -2.4
574,111 - CSW01_02875 0.63 -1.9
574,203 - CSW01_02875 0.72 -1.1
574,232 + CSW01_02875 0.75 -3.5
574,232 + CSW01_02875 0.75 -2.6
574,232 + CSW01_02875 0.75 -0.8
574,232 + CSW01_02875 0.75 +0.3
574,240 - CSW01_02875 0.75 -1.3
574,255 + CSW01_02875 0.77 -2.9
574,260 + CSW01_02875 0.77 -3.5
574,268 - CSW01_02875 0.78 -2.6
574,308 + CSW01_02875 0.82 -1.2
574,414 + +2.0
574,495 + +1.3
574,523 + +0.2
574,592 + +0.9
574,637 + -0.5
574,638 + -0.1
574,676 + +0.0
574,676 + -1.8
574,786 + CSW01_02880 0.33 +1.3
574,817 - CSW01_02880 0.40 -3.9
574,848 - CSW01_02880 0.47 -1.1
574,848 - CSW01_02880 0.47 +0.4
574,848 - CSW01_02880 0.47 -0.3
574,850 + CSW01_02880 0.47 -0.4
574,863 - CSW01_02880 0.50 -2.6
574,926 + CSW01_02880 0.64 +0.6
574,945 + CSW01_02880 0.68 -1.3
575,030 - CSW01_02880 0.86 -0.1
575,051 - -0.7
575,066 + -4.4
575,075 + -2.8
575,083 - -0.9
575,096 + +0.5
575,104 - -1.6
575,142 - +1.3
575,189 + +0.3

Or see this region's nucleotide sequence