Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02720

Experiment: ICP3_phage_41.1_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_02715 and CSW01_02720 are separated by 621 nucleotidesCSW01_02720 and CSW01_02725 overlap by 4 nucleotides CSW01_02715: CSW01_02715 - transcriptional antiterminator, at 541,751 to 542,479 _02715 CSW01_02720: CSW01_02720 - AraC family transcriptional regulator, at 543,101 to 543,916 _02720 CSW01_02725: CSW01_02725 - methyl-accepting chemotaxis protein, at 543,913 to 545,793 _02725 Position (kb) 543 544Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 542.125 kb on - strand, within CSW01_02715at 542.125 kb on - strand, within CSW01_02715at 542.151 kb on - strand, within CSW01_02715at 542.151 kb on - strand, within CSW01_02715at 542.195 kb on + strand, within CSW01_02715at 542.203 kb on + strand, within CSW01_02715at 542.203 kb on + strand, within CSW01_02715at 542.211 kb on - strand, within CSW01_02715at 542.211 kb on - strand, within CSW01_02715at 542.235 kb on + strand, within CSW01_02715at 542.269 kb on - strand, within CSW01_02715at 542.282 kb on + strand, within CSW01_02715at 542.282 kb on + strand, within CSW01_02715at 542.292 kb on + strand, within CSW01_02715at 542.292 kb on + strand, within CSW01_02715at 542.292 kb on + strand, within CSW01_02715at 542.292 kb on + strand, within CSW01_02715at 542.300 kb on - strand, within CSW01_02715at 542.300 kb on - strand, within CSW01_02715at 542.300 kb on - strand, within CSW01_02715at 542.307 kb on + strand, within CSW01_02715at 542.315 kb on - strand, within CSW01_02715at 542.315 kb on - strand, within CSW01_02715at 542.319 kb on + strand, within CSW01_02715at 542.327 kb on - strand, within CSW01_02715at 542.334 kb on - strand, within CSW01_02715at 542.336 kb on + strand, within CSW01_02715at 542.336 kb on + strand, within CSW01_02715at 542.371 kb on + strand, within CSW01_02715at 542.395 kb on + strand, within CSW01_02715at 542.411 kb on + strandat 542.411 kb on + strandat 542.412 kb on + strandat 542.412 kb on + strandat 542.425 kb on - strandat 542.432 kb on + strandat 542.450 kb on + strandat 542.457 kb on + strandat 542.457 kb on - strandat 542.472 kb on + strandat 542.480 kb on - strandat 542.513 kb on + strandat 542.513 kb on + strandat 542.521 kb on + strandat 542.536 kb on - strandat 542.579 kb on + strandat 542.580 kb on + strandat 542.580 kb on + strandat 542.581 kb on + strandat 542.585 kb on + strandat 542.585 kb on + strandat 542.585 kb on + strandat 542.585 kb on + strandat 542.588 kb on - strandat 542.588 kb on - strandat 542.588 kb on - strandat 542.593 kb on - strandat 542.617 kb on + strandat 542.632 kb on + strandat 542.775 kb on - strandat 542.793 kb on - strandat 542.989 kb on + strandat 542.997 kb on - strandat 543.011 kb on - strandat 543.046 kb on - strandat 543.057 kb on - strandat 543.057 kb on - strandat 543.104 kb on + strandat 543.104 kb on + strandat 543.104 kb on + strandat 543.104 kb on + strandat 543.104 kb on + strandat 543.226 kb on - strand, within CSW01_02720at 543.228 kb on - strand, within CSW01_02720at 543.257 kb on - strand, within CSW01_02720at 543.351 kb on + strand, within CSW01_02720at 543.351 kb on + strand, within CSW01_02720at 543.351 kb on + strand, within CSW01_02720at 543.364 kb on + strand, within CSW01_02720at 543.364 kb on + strand, within CSW01_02720at 543.374 kb on + strand, within CSW01_02720at 543.379 kb on + strand, within CSW01_02720at 543.386 kb on + strand, within CSW01_02720at 543.387 kb on - strand, within CSW01_02720at 543.392 kb on - strand, within CSW01_02720at 543.396 kb on - strand, within CSW01_02720at 543.396 kb on - strand, within CSW01_02720at 543.565 kb on + strand, within CSW01_02720at 543.577 kb on + strand, within CSW01_02720at 543.582 kb on + strand, within CSW01_02720at 543.586 kb on + strand, within CSW01_02720at 543.590 kb on - strand, within CSW01_02720at 543.596 kb on + strand, within CSW01_02720at 543.596 kb on + strand, within CSW01_02720at 543.604 kb on - strand, within CSW01_02720at 543.604 kb on - strand, within CSW01_02720at 543.604 kb on - strand, within CSW01_02720at 543.658 kb on + strand, within CSW01_02720at 543.682 kb on + strand, within CSW01_02720at 543.700 kb on + strand, within CSW01_02720at 543.746 kb on - strand, within CSW01_02720at 543.850 kb on + strandat 543.850 kb on + strandat 543.850 kb on + strandat 543.855 kb on + strandat 543.863 kb on - strandat 543.869 kb on - strandat 543.869 kb on - strandat 543.872 kb on - strandat 543.872 kb on - strandat 543.971 kb on + strandat 543.971 kb on + strandat 543.994 kb on + strandat 543.994 kb on + strandat 543.996 kb on + strandat 543.996 kb on + strandat 543.996 kb on + strandat 543.996 kb on + strandat 543.996 kb on + strandat 543.996 kb on + strandat 543.996 kb on + strandat 543.996 kb on + strandat 543.996 kb on + strandat 543.996 kb on + strandat 543.996 kb on + strandat 543.996 kb on + strandat 543.996 kb on + strandat 543.996 kb on + strandat 543.996 kb on + strandat 543.996 kb on + strandat 544.001 kb on + strandat 544.001 kb on + strandat 544.002 kb on - strandat 544.002 kb on - strandat 544.002 kb on - strandat 544.004 kb on - strandat 544.004 kb on - strandat 544.004 kb on - strandat 544.004 kb on - strandat 544.004 kb on - strandat 544.004 kb on - strandat 544.004 kb on - strandat 544.004 kb on - strandat 544.004 kb on - strandat 544.004 kb on - strandat 544.004 kb on - strandat 544.004 kb on - strandat 544.009 kb on - strandat 544.127 kb on + strand, within CSW01_02725at 544.145 kb on + strand, within CSW01_02725at 544.145 kb on + strand, within CSW01_02725at 544.145 kb on + strand, within CSW01_02725at 544.153 kb on - strand, within CSW01_02725at 544.161 kb on - strand, within CSW01_02725at 544.200 kb on + strand, within CSW01_02725at 544.212 kb on + strand, within CSW01_02725at 544.218 kb on - strand, within CSW01_02725at 544.218 kb on - strand, within CSW01_02725at 544.249 kb on + strand, within CSW01_02725at 544.279 kb on + strand, within CSW01_02725at 544.279 kb on + strand, within CSW01_02725at 544.286 kb on + strand, within CSW01_02725at 544.286 kb on + strand, within CSW01_02725at 544.287 kb on + strand, within CSW01_02725at 544.287 kb on + strand, within CSW01_02725at 544.287 kb on + strand, within CSW01_02725at 544.287 kb on + strand, within CSW01_02725at 544.287 kb on - strand, within CSW01_02725at 544.287 kb on - strand, within CSW01_02725at 544.287 kb on - strand, within CSW01_02725at 544.287 kb on - strand, within CSW01_02725at 544.289 kb on + strand, within CSW01_02725at 544.291 kb on + strand, within CSW01_02725at 544.295 kb on - strand, within CSW01_02725at 544.295 kb on - strand, within CSW01_02725at 544.295 kb on - strand, within CSW01_02725at 544.295 kb on - strand, within CSW01_02725at 544.295 kb on - strand, within CSW01_02725at 544.299 kb on + strand, within CSW01_02725at 544.299 kb on + strand, within CSW01_02725at 544.347 kb on + strand, within CSW01_02725at 544.393 kb on + strand, within CSW01_02725at 544.421 kb on + strand, within CSW01_02725at 544.446 kb on + strand, within CSW01_02725at 544.449 kb on - strand, within CSW01_02725at 544.454 kb on - strand, within CSW01_02725at 544.472 kb on + strand, within CSW01_02725at 544.472 kb on + strand, within CSW01_02725at 544.472 kb on + strand, within CSW01_02725at 544.480 kb on - strand, within CSW01_02725at 544.480 kb on - strand, within CSW01_02725at 544.480 kb on - strand, within CSW01_02725at 544.480 kb on - strand, within CSW01_02725at 544.480 kb on - strand, within CSW01_02725at 544.480 kb on - strand, within CSW01_02725at 544.482 kb on + strand, within CSW01_02725at 544.490 kb on - strand, within CSW01_02725at 544.500 kb on - strand, within CSW01_02725at 544.508 kb on + strand, within CSW01_02725at 544.509 kb on + strand, within CSW01_02725at 544.517 kb on - strand, within CSW01_02725at 544.584 kb on + strand, within CSW01_02725at 544.584 kb on + strand, within CSW01_02725at 544.584 kb on + strand, within CSW01_02725at 544.584 kb on + strand, within CSW01_02725at 544.599 kb on + strand, within CSW01_02725at 544.599 kb on + strand, within CSW01_02725at 544.604 kb on + strand, within CSW01_02725at 544.604 kb on + strand, within CSW01_02725at 544.606 kb on + strand, within CSW01_02725at 544.612 kb on - strand, within CSW01_02725at 544.646 kb on - strand, within CSW01_02725at 544.646 kb on - strand, within CSW01_02725at 544.678 kb on - strand, within CSW01_02725at 544.698 kb on - strand, within CSW01_02725at 544.779 kb on - strand, within CSW01_02725at 544.799 kb on + strand, within CSW01_02725at 544.799 kb on + strand, within CSW01_02725at 544.799 kb on + strand, within CSW01_02725at 544.799 kb on + strand, within CSW01_02725at 544.807 kb on - strand, within CSW01_02725at 544.807 kb on - strand, within CSW01_02725at 544.807 kb on - strand, within CSW01_02725at 544.812 kb on + strand, within CSW01_02725at 544.819 kb on + strand, within CSW01_02725at 544.819 kb on + strand, within CSW01_02725at 544.848 kb on - strand, within CSW01_02725at 544.869 kb on - strand, within CSW01_02725at 544.906 kb on + strand, within CSW01_02725

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
remove
542,125 - CSW01_02715 0.51 -4.6
542,125 - CSW01_02715 0.51 -1.7
542,151 - CSW01_02715 0.55 +1.2
542,151 - CSW01_02715 0.55 +1.9
542,195 + CSW01_02715 0.61 -0.0
542,203 + CSW01_02715 0.62 +0.4
542,203 + CSW01_02715 0.62 +1.2
542,211 - CSW01_02715 0.63 -0.1
542,211 - CSW01_02715 0.63 +0.4
542,235 + CSW01_02715 0.66 -3.6
542,269 - CSW01_02715 0.71 -1.4
542,282 + CSW01_02715 0.73 +0.1
542,282 + CSW01_02715 0.73 -0.7
542,292 + CSW01_02715 0.74 +1.8
542,292 + CSW01_02715 0.74 +0.3
542,292 + CSW01_02715 0.74 +0.1
542,292 + CSW01_02715 0.74 -0.4
542,300 - CSW01_02715 0.75 -4.0
542,300 - CSW01_02715 0.75 +0.3
542,300 - CSW01_02715 0.75 -2.0
542,307 + CSW01_02715 0.76 -1.3
542,315 - CSW01_02715 0.77 -0.9
542,315 - CSW01_02715 0.77 -1.2
542,319 + CSW01_02715 0.78 -2.1
542,327 - CSW01_02715 0.79 -1.4
542,334 - CSW01_02715 0.80 -2.7
542,336 + CSW01_02715 0.80 +0.5
542,336 + CSW01_02715 0.80 -0.9
542,371 + CSW01_02715 0.85 -0.2
542,395 + CSW01_02715 0.88 -1.2
542,411 + +1.1
542,411 + -0.8
542,412 + +0.8
542,412 + -0.3
542,425 - -0.5
542,432 + +0.2
542,450 + +0.9
542,457 + +0.3
542,457 - -0.5
542,472 + +0.5
542,480 - -3.5
542,513 + -1.1
542,513 + +0.8
542,521 + -3.7
542,536 - +0.9
542,579 + +1.3
542,580 + +0.1
542,580 + +0.2
542,581 + -0.6
542,585 + +0.1
542,585 + +0.8
542,585 + -0.6
542,585 + -0.0
542,588 - +0.7
542,588 - -2.2
542,588 - +0.6
542,593 - +0.1
542,617 + -0.5
542,632 + +0.2
542,775 - -0.3
542,793 - -1.4
542,989 + -0.5
542,997 - -1.3
543,011 - -1.7
543,046 - -2.3
543,057 - -1.4
543,057 - -2.9
543,104 + -0.9
543,104 + +0.2
543,104 + -0.2
543,104 + +0.4
543,104 + +0.2
543,226 - CSW01_02720 0.15 -3.4
543,228 - CSW01_02720 0.16 -0.0
543,257 - CSW01_02720 0.19 -2.4
543,351 + CSW01_02720 0.31 -0.0
543,351 + CSW01_02720 0.31 +0.8
543,351 + CSW01_02720 0.31 +0.8
543,364 + CSW01_02720 0.32 +0.8
543,364 + CSW01_02720 0.32 -4.6
543,374 + CSW01_02720 0.33 -0.1
543,379 + CSW01_02720 0.34 -0.1
543,386 + CSW01_02720 0.35 -1.1
543,387 - CSW01_02720 0.35 +0.3
543,392 - CSW01_02720 0.36 -4.6
543,396 - CSW01_02720 0.36 -2.5
543,396 - CSW01_02720 0.36 +0.6
543,565 + CSW01_02720 0.57 -0.3
543,577 + CSW01_02720 0.58 +0.4
543,582 + CSW01_02720 0.59 +0.8
543,586 + CSW01_02720 0.59 +1.5
543,590 - CSW01_02720 0.60 +0.9
543,596 + CSW01_02720 0.61 +1.6
543,596 + CSW01_02720 0.61 +0.3
543,604 - CSW01_02720 0.62 -1.1
543,604 - CSW01_02720 0.62 +1.1
543,604 - CSW01_02720 0.62 +1.0
543,658 + CSW01_02720 0.68 +0.1
543,682 + CSW01_02720 0.71 +0.1
543,700 + CSW01_02720 0.73 +1.0
543,746 - CSW01_02720 0.79 -1.7
543,850 + +0.9
543,850 + +0.0
543,850 + -0.0
543,855 + +0.7
543,863 - -0.2
543,869 - -3.7
543,869 - -0.4
543,872 - -0.3
543,872 - -3.7
543,971 + +1.1
543,971 + +0.1
543,994 + -0.1
543,994 + +0.4
543,996 + -1.5
543,996 + -1.1
543,996 + +0.6
543,996 + +0.9
543,996 + -0.1
543,996 + -1.2
543,996 + -0.8
543,996 + -0.1
543,996 + -0.1
543,996 + +0.4
543,996 + +0.0
543,996 + +0.5
543,996 + -3.6
543,996 + +0.8
543,996 + -1.2
543,996 + +0.9
544,001 + -0.7
544,001 + -0.1
544,002 - +0.2
544,002 - -1.6
544,002 - -2.0
544,004 - -0.3
544,004 - -0.2
544,004 - -2.9
544,004 - -2.4
544,004 - -3.1
544,004 - +0.9
544,004 - -3.5
544,004 - -1.0
544,004 - +0.2
544,004 - -4.1
544,004 - -0.7
544,004 - -1.1
544,009 - -0.2
544,127 + CSW01_02725 0.11 -2.7
544,145 + CSW01_02725 0.12 +0.0
544,145 + CSW01_02725 0.12 +1.3
544,145 + CSW01_02725 0.12 +0.7
544,153 - CSW01_02725 0.13 -0.2
544,161 - CSW01_02725 0.13 -1.7
544,200 + CSW01_02725 0.15 -0.9
544,212 + CSW01_02725 0.16 -4.1
544,218 - CSW01_02725 0.16 -0.3
544,218 - CSW01_02725 0.16 -1.5
544,249 + CSW01_02725 0.18 -0.2
544,279 + CSW01_02725 0.19 +0.6
544,279 + CSW01_02725 0.19 -0.9
544,286 + CSW01_02725 0.20 -4.1
544,286 + CSW01_02725 0.20 +0.2
544,287 + CSW01_02725 0.20 +0.7
544,287 + CSW01_02725 0.20 +0.5
544,287 + CSW01_02725 0.20 -0.8
544,287 + CSW01_02725 0.20 -1.6
544,287 - CSW01_02725 0.20 -0.7
544,287 - CSW01_02725 0.20 +1.2
544,287 - CSW01_02725 0.20 +0.9
544,287 - CSW01_02725 0.20 -3.1
544,289 + CSW01_02725 0.20 +0.7
544,291 + CSW01_02725 0.20 +0.9
544,295 - CSW01_02725 0.20 +1.8
544,295 - CSW01_02725 0.20 -0.4
544,295 - CSW01_02725 0.20 -1.9
544,295 - CSW01_02725 0.20 -2.4
544,295 - CSW01_02725 0.20 +0.5
544,299 + CSW01_02725 0.21 +0.2
544,299 + CSW01_02725 0.21 +1.6
544,347 + CSW01_02725 0.23 +1.3
544,393 + CSW01_02725 0.26 +0.2
544,421 + CSW01_02725 0.27 +0.8
544,446 + CSW01_02725 0.28 -1.9
544,449 - CSW01_02725 0.28 -1.7
544,454 - CSW01_02725 0.29 -1.0
544,472 + CSW01_02725 0.30 +1.9
544,472 + CSW01_02725 0.30 -0.0
544,472 + CSW01_02725 0.30 +0.2
544,480 - CSW01_02725 0.30 -0.3
544,480 - CSW01_02725 0.30 +0.4
544,480 - CSW01_02725 0.30 -3.2
544,480 - CSW01_02725 0.30 +0.6
544,480 - CSW01_02725 0.30 +0.5
544,480 - CSW01_02725 0.30 -0.6
544,482 + CSW01_02725 0.30 +0.9
544,490 - CSW01_02725 0.31 -2.0
544,500 - CSW01_02725 0.31 -0.7
544,508 + CSW01_02725 0.32 -0.3
544,509 + CSW01_02725 0.32 +0.4
544,517 - CSW01_02725 0.32 -0.1
544,584 + CSW01_02725 0.36 +0.8
544,584 + CSW01_02725 0.36 -0.8
544,584 + CSW01_02725 0.36 -0.5
544,584 + CSW01_02725 0.36 +0.9
544,599 + CSW01_02725 0.36 +0.8
544,599 + CSW01_02725 0.36 -1.4
544,604 + CSW01_02725 0.37 +1.1
544,604 + CSW01_02725 0.37 +0.5
544,606 + CSW01_02725 0.37 +0.2
544,612 - CSW01_02725 0.37 -3.9
544,646 - CSW01_02725 0.39 -2.6
544,646 - CSW01_02725 0.39 +0.9
544,678 - CSW01_02725 0.41 -2.4
544,698 - CSW01_02725 0.42 +0.0
544,779 - CSW01_02725 0.46 -0.2
544,799 + CSW01_02725 0.47 -0.5
544,799 + CSW01_02725 0.47 +0.9
544,799 + CSW01_02725 0.47 +1.1
544,799 + CSW01_02725 0.47 +0.6
544,807 - CSW01_02725 0.48 -0.6
544,807 - CSW01_02725 0.48 +0.1
544,807 - CSW01_02725 0.48 +0.8
544,812 + CSW01_02725 0.48 +1.2
544,819 + CSW01_02725 0.48 -1.6
544,819 + CSW01_02725 0.48 -1.2
544,848 - CSW01_02725 0.50 +1.3
544,869 - CSW01_02725 0.51 -1.6
544,906 + CSW01_02725 0.53 +1.3

Or see this region's nucleotide sequence