Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02710

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02705 and CSW01_02710 are separated by 496 nucleotidesCSW01_02710 and CSW01_02715 are separated by 103 nucleotides CSW01_02705: CSW01_02705 - transposase, at 539,149 to 539,561 _02705 CSW01_02710: CSW01_02710 - chemotaxis protein, at 540,058 to 541,647 _02710 CSW01_02715: CSW01_02715 - transcriptional antiterminator, at 541,751 to 542,479 _02715 Position (kb) 540 541 542Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 539.067 kb on + strandat 539.067 kb on + strandat 539.067 kb on + strandat 539.067 kb on + strandat 539.067 kb on + strandat 539.067 kb on + strandat 539.067 kb on + strandat 539.067 kb on + strandat 539.067 kb on + strandat 539.067 kb on + strandat 539.071 kb on - strandat 539.075 kb on - strandat 539.075 kb on - strandat 539.075 kb on - strandat 539.075 kb on - strandat 539.075 kb on - strandat 539.089 kb on + strandat 539.104 kb on - strandat 539.167 kb on - strandat 539.178 kb on - strandat 539.183 kb on - strandat 539.252 kb on + strand, within CSW01_02705at 539.254 kb on + strand, within CSW01_02705at 539.270 kb on - strand, within CSW01_02705at 539.278 kb on + strand, within CSW01_02705at 539.335 kb on + strand, within CSW01_02705at 539.343 kb on - strand, within CSW01_02705at 539.364 kb on - strand, within CSW01_02705at 539.364 kb on - strand, within CSW01_02705at 539.364 kb on - strand, within CSW01_02705at 539.364 kb on - strand, within CSW01_02705at 539.370 kb on + strand, within CSW01_02705at 539.392 kb on - strand, within CSW01_02705at 539.414 kb on + strand, within CSW01_02705at 539.430 kb on + strand, within CSW01_02705at 539.438 kb on - strand, within CSW01_02705at 539.458 kb on - strand, within CSW01_02705at 539.460 kb on + strand, within CSW01_02705at 539.460 kb on + strand, within CSW01_02705at 539.460 kb on + strand, within CSW01_02705at 539.468 kb on - strand, within CSW01_02705at 539.474 kb on - strand, within CSW01_02705at 539.504 kb on + strand, within CSW01_02705at 539.553 kb on + strandat 539.553 kb on + strandat 539.567 kb on - strandat 539.592 kb on - strandat 539.632 kb on + strandat 539.643 kb on + strandat 539.643 kb on + strandat 539.643 kb on + strandat 539.675 kb on + strandat 539.680 kb on + strandat 539.768 kb on + strandat 539.769 kb on + strandat 539.791 kb on - strandat 539.791 kb on - strandat 539.811 kb on + strandat 539.811 kb on + strandat 539.814 kb on + strandat 539.819 kb on - strandat 539.821 kb on + strandat 539.834 kb on + strandat 539.844 kb on + strandat 540.003 kb on + strandat 540.003 kb on + strandat 540.003 kb on + strandat 540.003 kb on + strandat 540.003 kb on + strandat 540.003 kb on + strandat 540.007 kb on + strandat 540.011 kb on - strandat 540.011 kb on - strandat 540.011 kb on - strandat 540.015 kb on - strandat 540.015 kb on - strandat 540.046 kb on + strandat 540.073 kb on - strandat 540.094 kb on + strandat 540.127 kb on - strandat 540.162 kb on - strandat 540.204 kb on + strandat 540.210 kb on + strandat 540.211 kb on - strandat 540.217 kb on + strand, within CSW01_02710at 540.218 kb on - strand, within CSW01_02710at 540.218 kb on - strand, within CSW01_02710at 540.220 kb on - strand, within CSW01_02710at 540.228 kb on - strand, within CSW01_02710at 540.247 kb on + strand, within CSW01_02710at 540.247 kb on + strand, within CSW01_02710at 540.250 kb on - strand, within CSW01_02710at 540.255 kb on - strand, within CSW01_02710at 540.255 kb on - strand, within CSW01_02710at 540.255 kb on - strand, within CSW01_02710at 540.255 kb on - strand, within CSW01_02710at 540.345 kb on + strand, within CSW01_02710at 540.353 kb on - strand, within CSW01_02710at 540.353 kb on - strand, within CSW01_02710at 540.364 kb on + strand, within CSW01_02710at 540.375 kb on - strand, within CSW01_02710at 540.399 kb on + strand, within CSW01_02710at 540.399 kb on + strand, within CSW01_02710at 540.409 kb on + strand, within CSW01_02710at 540.413 kb on + strand, within CSW01_02710at 540.414 kb on + strand, within CSW01_02710at 540.419 kb on + strand, within CSW01_02710at 540.422 kb on - strand, within CSW01_02710at 540.431 kb on + strand, within CSW01_02710at 540.432 kb on - strand, within CSW01_02710at 540.540 kb on - strand, within CSW01_02710at 540.544 kb on - strand, within CSW01_02710at 540.544 kb on - strand, within CSW01_02710at 540.545 kb on - strand, within CSW01_02710at 540.565 kb on - strand, within CSW01_02710at 540.586 kb on + strand, within CSW01_02710at 540.626 kb on + strand, within CSW01_02710at 540.713 kb on + strand, within CSW01_02710at 540.713 kb on + strand, within CSW01_02710at 540.713 kb on + strand, within CSW01_02710at 540.721 kb on - strand, within CSW01_02710at 540.721 kb on - strand, within CSW01_02710at 540.721 kb on - strand, within CSW01_02710at 540.781 kb on + strand, within CSW01_02710at 540.789 kb on - strand, within CSW01_02710at 540.789 kb on - strand, within CSW01_02710at 540.796 kb on + strand, within CSW01_02710at 540.796 kb on + strand, within CSW01_02710at 540.796 kb on + strand, within CSW01_02710at 540.796 kb on + strand, within CSW01_02710at 540.804 kb on - strand, within CSW01_02710at 540.804 kb on - strand, within CSW01_02710at 540.877 kb on + strand, within CSW01_02710at 540.877 kb on + strand, within CSW01_02710at 540.877 kb on + strand, within CSW01_02710at 540.885 kb on - strand, within CSW01_02710at 540.885 kb on - strand, within CSW01_02710at 540.885 kb on - strand, within CSW01_02710at 540.897 kb on + strand, within CSW01_02710at 540.897 kb on + strand, within CSW01_02710at 540.905 kb on - strand, within CSW01_02710at 540.905 kb on - strand, within CSW01_02710at 540.952 kb on - strand, within CSW01_02710at 541.003 kb on - strand, within CSW01_02710at 541.092 kb on - strand, within CSW01_02710at 541.101 kb on + strand, within CSW01_02710at 541.123 kb on - strand, within CSW01_02710at 541.191 kb on + strand, within CSW01_02710at 541.205 kb on + strand, within CSW01_02710at 541.205 kb on + strand, within CSW01_02710at 541.219 kb on + strand, within CSW01_02710at 541.219 kb on + strand, within CSW01_02710at 541.281 kb on - strand, within CSW01_02710at 541.310 kb on + strand, within CSW01_02710at 541.356 kb on - strand, within CSW01_02710at 541.371 kb on + strand, within CSW01_02710at 541.376 kb on + strand, within CSW01_02710at 541.379 kb on - strand, within CSW01_02710at 541.414 kb on + strand, within CSW01_02710at 541.421 kb on - strand, within CSW01_02710at 541.427 kb on - strand, within CSW01_02710at 541.427 kb on - strand, within CSW01_02710at 541.427 kb on - strand, within CSW01_02710at 541.451 kb on - strand, within CSW01_02710at 541.479 kb on + strand, within CSW01_02710at 541.527 kb on - strandat 541.591 kb on + strandat 541.598 kb on + strandat 541.598 kb on + strandat 541.598 kb on + strandat 541.599 kb on - strandat 541.676 kb on + strandat 541.676 kb on + strandat 541.676 kb on + strandat 541.684 kb on - strandat 541.684 kb on - strandat 541.731 kb on + strandat 541.751 kb on + strandat 541.751 kb on + strandat 541.753 kb on + strandat 541.759 kb on - strandat 541.770 kb on + strandat 541.797 kb on + strandat 541.818 kb on - strandat 541.962 kb on + strand, within CSW01_02715at 541.980 kb on - strand, within CSW01_02715at 542.047 kb on + strand, within CSW01_02715at 542.052 kb on + strand, within CSW01_02715at 542.060 kb on + strand, within CSW01_02715at 542.071 kb on + strand, within CSW01_02715at 542.125 kb on - strand, within CSW01_02715at 542.125 kb on - strand, within CSW01_02715at 542.151 kb on - strand, within CSW01_02715at 542.151 kb on - strand, within CSW01_02715at 542.195 kb on + strand, within CSW01_02715at 542.203 kb on + strand, within CSW01_02715at 542.203 kb on + strand, within CSW01_02715at 542.211 kb on - strand, within CSW01_02715at 542.211 kb on - strand, within CSW01_02715at 542.235 kb on + strand, within CSW01_02715at 542.269 kb on - strand, within CSW01_02715at 542.282 kb on + strand, within CSW01_02715at 542.282 kb on + strand, within CSW01_02715at 542.292 kb on + strand, within CSW01_02715at 542.292 kb on + strand, within CSW01_02715at 542.292 kb on + strand, within CSW01_02715at 542.292 kb on + strand, within CSW01_02715at 542.300 kb on - strand, within CSW01_02715at 542.300 kb on - strand, within CSW01_02715at 542.300 kb on - strand, within CSW01_02715at 542.307 kb on + strand, within CSW01_02715at 542.315 kb on - strand, within CSW01_02715at 542.315 kb on - strand, within CSW01_02715at 542.319 kb on + strand, within CSW01_02715at 542.327 kb on - strand, within CSW01_02715at 542.334 kb on - strand, within CSW01_02715at 542.336 kb on + strand, within CSW01_02715at 542.336 kb on + strand, within CSW01_02715at 542.371 kb on + strand, within CSW01_02715at 542.395 kb on + strand, within CSW01_02715at 542.411 kb on + strandat 542.411 kb on + strandat 542.412 kb on + strandat 542.412 kb on + strandat 542.425 kb on - strandat 542.432 kb on + strandat 542.450 kb on + strandat 542.457 kb on + strandat 542.457 kb on - strandat 542.472 kb on + strandat 542.480 kb on - strandat 542.513 kb on + strandat 542.513 kb on + strandat 542.521 kb on + strandat 542.536 kb on - strandat 542.579 kb on + strandat 542.580 kb on + strandat 542.580 kb on + strandat 542.581 kb on + strandat 542.585 kb on + strandat 542.585 kb on + strandat 542.585 kb on + strandat 542.585 kb on + strandat 542.588 kb on - strandat 542.588 kb on - strandat 542.588 kb on - strandat 542.593 kb on - strandat 542.617 kb on + strandat 542.632 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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539,067 + -0.3
539,067 + -0.5
539,067 + -4.2
539,067 + -0.5
539,067 + +0.2
539,067 + -1.4
539,067 + +1.1
539,067 + -0.9
539,067 + -1.3
539,067 + +0.4
539,071 - +0.6
539,075 - -1.4
539,075 - +0.0
539,075 - +0.3
539,075 - +0.3
539,075 - -0.1
539,089 + -0.5
539,104 - -0.6
539,167 - -0.7
539,178 - +0.8
539,183 - +2.4
539,252 + CSW01_02705 0.25 +0.7
539,254 + CSW01_02705 0.25 -3.4
539,270 - CSW01_02705 0.29 -1.0
539,278 + CSW01_02705 0.31 +0.2
539,335 + CSW01_02705 0.45 -0.4
539,343 - CSW01_02705 0.47 -1.6
539,364 - CSW01_02705 0.52 +1.1
539,364 - CSW01_02705 0.52 +1.4
539,364 - CSW01_02705 0.52 -2.1
539,364 - CSW01_02705 0.52 -0.1
539,370 + CSW01_02705 0.54 +0.5
539,392 - CSW01_02705 0.59 -1.9
539,414 + CSW01_02705 0.64 -0.1
539,430 + CSW01_02705 0.68 -3.6
539,438 - CSW01_02705 0.70 +1.9
539,458 - CSW01_02705 0.75 -0.6
539,460 + CSW01_02705 0.75 -3.0
539,460 + CSW01_02705 0.75 +0.5
539,460 + CSW01_02705 0.75 +0.2
539,468 - CSW01_02705 0.77 +2.2
539,474 - CSW01_02705 0.79 +0.6
539,504 + CSW01_02705 0.86 -3.7
539,553 + +0.5
539,553 + +0.8
539,567 - +0.6
539,592 - -0.4
539,632 + -2.5
539,643 + -0.8
539,643 + -0.1
539,643 + -3.3
539,675 + +0.8
539,680 + +1.4
539,768 + -0.1
539,769 + +1.6
539,791 - -1.0
539,791 - -1.6
539,811 + -0.3
539,811 + -0.8
539,814 + -0.7
539,819 - +0.6
539,821 + -3.3
539,834 + +0.8
539,844 + -1.3
540,003 + -0.2
540,003 + -4.0
540,003 + +0.7
540,003 + -0.2
540,003 + -4.0
540,003 + -0.4
540,007 + -3.4
540,011 - +0.7
540,011 - -1.3
540,011 - +0.8
540,015 - +0.3
540,015 - -0.7
540,046 + +0.2
540,073 - -0.3
540,094 + +1.2
540,127 - +0.6
540,162 - -0.4
540,204 + +1.1
540,210 + +0.2
540,211 - +0.6
540,217 + CSW01_02710 0.10 -0.3
540,218 - CSW01_02710 0.10 -1.4
540,218 - CSW01_02710 0.10 +0.4
540,220 - CSW01_02710 0.10 +0.0
540,228 - CSW01_02710 0.11 +1.0
540,247 + CSW01_02710 0.12 +0.4
540,247 + CSW01_02710 0.12 +0.8
540,250 - CSW01_02710 0.12 -3.1
540,255 - CSW01_02710 0.12 +0.7
540,255 - CSW01_02710 0.12 +0.7
540,255 - CSW01_02710 0.12 -0.7
540,255 - CSW01_02710 0.12 -4.1
540,345 + CSW01_02710 0.18 +1.4
540,353 - CSW01_02710 0.19 -2.1
540,353 - CSW01_02710 0.19 +0.6
540,364 + CSW01_02710 0.19 -0.2
540,375 - CSW01_02710 0.20 -3.9
540,399 + CSW01_02710 0.21 +0.6
540,399 + CSW01_02710 0.21 +0.9
540,409 + CSW01_02710 0.22 +1.5
540,413 + CSW01_02710 0.22 +0.2
540,414 + CSW01_02710 0.22 +1.1
540,419 + CSW01_02710 0.23 -0.8
540,422 - CSW01_02710 0.23 -0.3
540,431 + CSW01_02710 0.23 +3.0
540,432 - CSW01_02710 0.24 -2.4
540,540 - CSW01_02710 0.30 -0.6
540,544 - CSW01_02710 0.31 -3.6
540,544 - CSW01_02710 0.31 +0.8
540,545 - CSW01_02710 0.31 +0.9
540,565 - CSW01_02710 0.32 +0.5
540,586 + CSW01_02710 0.33 +0.9
540,626 + CSW01_02710 0.36 +1.5
540,713 + CSW01_02710 0.41 -0.4
540,713 + CSW01_02710 0.41 +0.0
540,713 + CSW01_02710 0.41 -0.9
540,721 - CSW01_02710 0.42 +1.0
540,721 - CSW01_02710 0.42 +1.9
540,721 - CSW01_02710 0.42 +0.6
540,781 + CSW01_02710 0.45 +0.4
540,789 - CSW01_02710 0.46 +2.0
540,789 - CSW01_02710 0.46 -0.7
540,796 + CSW01_02710 0.46 +1.3
540,796 + CSW01_02710 0.46 -0.1
540,796 + CSW01_02710 0.46 +2.1
540,796 + CSW01_02710 0.46 -2.6
540,804 - CSW01_02710 0.47 +0.7
540,804 - CSW01_02710 0.47 +0.1
540,877 + CSW01_02710 0.52 +0.3
540,877 + CSW01_02710 0.52 +0.0
540,877 + CSW01_02710 0.52 +1.1
540,885 - CSW01_02710 0.52 +0.5
540,885 - CSW01_02710 0.52 +0.4
540,885 - CSW01_02710 0.52 +2.2
540,897 + CSW01_02710 0.53 -1.6
540,897 + CSW01_02710 0.53 -1.6
540,905 - CSW01_02710 0.53 -1.4
540,905 - CSW01_02710 0.53 +0.8
540,952 - CSW01_02710 0.56 -1.6
541,003 - CSW01_02710 0.59 +0.9
541,092 - CSW01_02710 0.65 -0.6
541,101 + CSW01_02710 0.66 -1.4
541,123 - CSW01_02710 0.67 -0.1
541,191 + CSW01_02710 0.71 +0.5
541,205 + CSW01_02710 0.72 +0.5
541,205 + CSW01_02710 0.72 +0.9
541,219 + CSW01_02710 0.73 +1.4
541,219 + CSW01_02710 0.73 +1.2
541,281 - CSW01_02710 0.77 +1.2
541,310 + CSW01_02710 0.79 -1.2
541,356 - CSW01_02710 0.82 -2.5
541,371 + CSW01_02710 0.83 +0.6
541,376 + CSW01_02710 0.83 -0.6
541,379 - CSW01_02710 0.83 -3.8
541,414 + CSW01_02710 0.85 +0.6
541,421 - CSW01_02710 0.86 +0.9
541,427 - CSW01_02710 0.86 -1.4
541,427 - CSW01_02710 0.86 +0.4
541,427 - CSW01_02710 0.86 -1.6
541,451 - CSW01_02710 0.88 +0.0
541,479 + CSW01_02710 0.89 +1.5
541,527 - +0.1
541,591 + +0.6
541,598 + +1.6
541,598 + -3.6
541,598 + +1.8
541,599 - -0.5
541,676 + -1.9
541,676 + +1.3
541,676 + -3.4
541,684 - -0.3
541,684 - -0.2
541,731 + -0.0
541,751 + -0.7
541,751 + +0.7
541,753 + -0.4
541,759 - -0.2
541,770 + +0.1
541,797 + +2.6
541,818 - +1.9
541,962 + CSW01_02715 0.29 -0.6
541,980 - CSW01_02715 0.31 -0.4
542,047 + CSW01_02715 0.41 -2.8
542,052 + CSW01_02715 0.41 +0.4
542,060 + CSW01_02715 0.42 +1.4
542,071 + CSW01_02715 0.44 +1.4
542,125 - CSW01_02715 0.51 -4.6
542,125 - CSW01_02715 0.51 -1.7
542,151 - CSW01_02715 0.55 +1.2
542,151 - CSW01_02715 0.55 +1.9
542,195 + CSW01_02715 0.61 -0.0
542,203 + CSW01_02715 0.62 +0.4
542,203 + CSW01_02715 0.62 +1.2
542,211 - CSW01_02715 0.63 -0.1
542,211 - CSW01_02715 0.63 +0.4
542,235 + CSW01_02715 0.66 -3.6
542,269 - CSW01_02715 0.71 -1.4
542,282 + CSW01_02715 0.73 +0.1
542,282 + CSW01_02715 0.73 -0.7
542,292 + CSW01_02715 0.74 +1.8
542,292 + CSW01_02715 0.74 +0.3
542,292 + CSW01_02715 0.74 +0.1
542,292 + CSW01_02715 0.74 -0.4
542,300 - CSW01_02715 0.75 -4.0
542,300 - CSW01_02715 0.75 +0.3
542,300 - CSW01_02715 0.75 -2.0
542,307 + CSW01_02715 0.76 -1.3
542,315 - CSW01_02715 0.77 -0.9
542,315 - CSW01_02715 0.77 -1.2
542,319 + CSW01_02715 0.78 -2.1
542,327 - CSW01_02715 0.79 -1.4
542,334 - CSW01_02715 0.80 -2.7
542,336 + CSW01_02715 0.80 +0.5
542,336 + CSW01_02715 0.80 -0.9
542,371 + CSW01_02715 0.85 -0.2
542,395 + CSW01_02715 0.88 -1.2
542,411 + +1.1
542,411 + -0.8
542,412 + +0.8
542,412 + -0.3
542,425 - -0.5
542,432 + +0.2
542,450 + +0.9
542,457 + +0.3
542,457 - -0.5
542,472 + +0.5
542,480 - -3.5
542,513 + -1.1
542,513 + +0.8
542,521 + -3.7
542,536 - +0.9
542,579 + +1.3
542,580 + +0.1
542,580 + +0.2
542,581 + -0.6
542,585 + +0.1
542,585 + +0.8
542,585 + -0.6
542,585 + -0.0
542,588 - +0.7
542,588 - -2.2
542,588 - +0.6
542,593 - +0.1
542,617 + -0.5
542,632 + +0.2

Or see this region's nucleotide sequence