Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02435

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02425 and CSW01_02430 overlap by 7 nucleotidesCSW01_02430 and CSW01_02435 are separated by 69 nucleotidesCSW01_02435 and CSW01_02440 are separated by 45 nucleotidesCSW01_02440 and CSW01_02445 overlap by 1 nucleotidesCSW01_02445 and CSW01_02450 are separated by 53 nucleotides CSW01_02425: CSW01_02425 - YggW family oxidoreductase, at 485,210 to 486,385 _02425 CSW01_02430: CSW01_02430 - non-canonical purine NTP pyrophosphatase, at 486,379 to 486,981 _02430 CSW01_02435: CSW01_02435 - DUF4426 domain-containing protein, at 487,051 to 487,482 _02435 CSW01_02440: CSW01_02440 - YggU family protein, at 487,528 to 487,818 _02440 CSW01_02445: CSW01_02445 - hypothetical protein, at 487,818 to 488,375 _02445 CSW01_02450: CSW01_02450 - pyrroline-5-carboxylate reductase, at 488,429 to 489,247 _02450 Position (kb) 487 488Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 486.099 kb on + strand, within CSW01_02425at 486.166 kb on - strand, within CSW01_02425at 486.213 kb on + strand, within CSW01_02425at 486.213 kb on + strand, within CSW01_02425at 486.213 kb on + strand, within CSW01_02425at 486.213 kb on + strand, within CSW01_02425at 486.221 kb on - strand, within CSW01_02425at 486.221 kb on - strand, within CSW01_02425at 486.221 kb on - strand, within CSW01_02425at 486.221 kb on - strand, within CSW01_02425at 486.221 kb on - strand, within CSW01_02425at 486.236 kb on - strand, within CSW01_02425at 486.272 kb on - strandat 486.348 kb on + strandat 486.425 kb on + strandat 486.469 kb on - strand, within CSW01_02430at 486.510 kb on - strand, within CSW01_02430at 486.517 kb on + strand, within CSW01_02430at 486.613 kb on + strand, within CSW01_02430at 486.621 kb on - strand, within CSW01_02430at 486.657 kb on - strand, within CSW01_02430at 486.738 kb on - strand, within CSW01_02430at 486.908 kb on - strand, within CSW01_02430at 486.987 kb on + strandat 487.028 kb on - strandat 487.048 kb on + strandat 487.061 kb on + strandat 487.061 kb on + strandat 487.061 kb on + strandat 487.061 kb on + strandat 487.061 kb on + strandat 487.061 kb on + strandat 487.069 kb on - strandat 487.069 kb on - strandat 487.069 kb on - strandat 487.099 kb on + strand, within CSW01_02435at 487.129 kb on + strand, within CSW01_02435at 487.129 kb on + strand, within CSW01_02435at 487.187 kb on + strand, within CSW01_02435at 487.187 kb on + strand, within CSW01_02435at 487.197 kb on + strand, within CSW01_02435at 487.230 kb on + strand, within CSW01_02435at 487.268 kb on + strand, within CSW01_02435at 487.343 kb on - strand, within CSW01_02435at 487.353 kb on + strand, within CSW01_02435at 487.375 kb on + strand, within CSW01_02435at 487.420 kb on - strand, within CSW01_02435at 487.422 kb on + strand, within CSW01_02435at 487.441 kb on + strandat 487.620 kb on + strand, within CSW01_02440at 487.628 kb on - strand, within CSW01_02440at 487.636 kb on - strand, within CSW01_02440at 487.640 kb on + strand, within CSW01_02440at 487.719 kb on - strand, within CSW01_02440at 487.732 kb on - strand, within CSW01_02440at 487.769 kb on + strand, within CSW01_02440at 487.782 kb on + strand, within CSW01_02440at 487.796 kb on + strandat 487.797 kb on - strandat 487.797 kb on - strandat 487.801 kb on + strandat 487.824 kb on - strandat 487.832 kb on + strandat 487.837 kb on + strandat 487.837 kb on + strandat 487.845 kb on - strandat 487.887 kb on - strand, within CSW01_02445at 487.887 kb on - strand, within CSW01_02445at 487.898 kb on - strand, within CSW01_02445at 487.904 kb on + strand, within CSW01_02445at 487.912 kb on - strand, within CSW01_02445at 487.912 kb on - strand, within CSW01_02445at 487.912 kb on - strand, within CSW01_02445at 487.912 kb on - strand, within CSW01_02445at 488.008 kb on - strand, within CSW01_02445at 488.010 kb on + strand, within CSW01_02445at 488.010 kb on + strand, within CSW01_02445at 488.059 kb on + strand, within CSW01_02445at 488.059 kb on + strand, within CSW01_02445at 488.067 kb on - strand, within CSW01_02445at 488.093 kb on + strand, within CSW01_02445at 488.098 kb on + strand, within CSW01_02445at 488.108 kb on + strand, within CSW01_02445at 488.108 kb on + strand, within CSW01_02445at 488.111 kb on - strand, within CSW01_02445at 488.111 kb on - strand, within CSW01_02445at 488.141 kb on - strand, within CSW01_02445at 488.197 kb on - strand, within CSW01_02445at 488.210 kb on + strand, within CSW01_02445at 488.218 kb on - strand, within CSW01_02445at 488.227 kb on + strand, within CSW01_02445at 488.324 kb on + strandat 488.324 kb on + strandat 488.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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486,099 + CSW01_02425 0.76 -3.2
486,166 - CSW01_02425 0.81 +0.9
486,213 + CSW01_02425 0.85 +1.9
486,213 + CSW01_02425 0.85 +1.4
486,213 + CSW01_02425 0.85 -0.6
486,213 + CSW01_02425 0.85 +2.1
486,221 - CSW01_02425 0.86 -2.1
486,221 - CSW01_02425 0.86 -1.6
486,221 - CSW01_02425 0.86 -0.2
486,221 - CSW01_02425 0.86 -2.5
486,221 - CSW01_02425 0.86 +2.0
486,236 - CSW01_02425 0.87 +1.4
486,272 - +1.3
486,348 + -0.6
486,425 + +0.4
486,469 - CSW01_02430 0.15 +0.2
486,510 - CSW01_02430 0.22 +0.2
486,517 + CSW01_02430 0.23 -0.9
486,613 + CSW01_02430 0.39 -0.9
486,621 - CSW01_02430 0.40 -2.1
486,657 - CSW01_02430 0.46 +0.5
486,738 - CSW01_02430 0.60 +0.8
486,908 - CSW01_02430 0.88 +0.5
486,987 + +0.7
487,028 - -1.1
487,048 + +0.5
487,061 + +0.1
487,061 + -0.6
487,061 + -0.8
487,061 + -0.8
487,061 + -0.4
487,061 + +0.3
487,069 - +0.3
487,069 - -0.4
487,069 - +0.8
487,099 + CSW01_02435 0.11 -2.2
487,129 + CSW01_02435 0.18 +1.5
487,129 + CSW01_02435 0.18 -1.6
487,187 + CSW01_02435 0.31 +1.3
487,187 + CSW01_02435 0.31 -0.6
487,197 + CSW01_02435 0.34 -3.7
487,230 + CSW01_02435 0.41 -2.3
487,268 + CSW01_02435 0.50 -2.9
487,343 - CSW01_02435 0.68 -1.1
487,353 + CSW01_02435 0.70 -1.0
487,375 + CSW01_02435 0.75 -2.4
487,420 - CSW01_02435 0.85 +0.8
487,422 + CSW01_02435 0.86 +0.4
487,441 + +5.3
487,620 + CSW01_02440 0.32 -0.7
487,628 - CSW01_02440 0.34 +0.2
487,636 - CSW01_02440 0.37 +0.6
487,640 + CSW01_02440 0.38 -0.8
487,719 - CSW01_02440 0.66 -1.5
487,732 - CSW01_02440 0.70 +0.7
487,769 + CSW01_02440 0.83 -0.6
487,782 + CSW01_02440 0.87 +1.7
487,796 + +0.8
487,797 - -3.1
487,797 - +0.7
487,801 + -4.0
487,824 - +0.4
487,832 + -1.5
487,837 + -2.5
487,837 + -1.0
487,845 - +0.3
487,887 - CSW01_02445 0.12 +1.1
487,887 - CSW01_02445 0.12 +0.8
487,898 - CSW01_02445 0.14 -3.3
487,904 + CSW01_02445 0.15 -0.8
487,912 - CSW01_02445 0.17 -2.3
487,912 - CSW01_02445 0.17 +0.5
487,912 - CSW01_02445 0.17 +0.5
487,912 - CSW01_02445 0.17 -1.5
488,008 - CSW01_02445 0.34 -0.5
488,010 + CSW01_02445 0.34 +1.5
488,010 + CSW01_02445 0.34 +0.2
488,059 + CSW01_02445 0.43 +0.3
488,059 + CSW01_02445 0.43 +1.5
488,067 - CSW01_02445 0.45 -0.2
488,093 + CSW01_02445 0.49 -2.1
488,098 + CSW01_02445 0.50 -1.8
488,108 + CSW01_02445 0.52 +0.1
488,108 + CSW01_02445 0.52 +1.8
488,111 - CSW01_02445 0.53 -1.1
488,111 - CSW01_02445 0.53 -2.3
488,141 - CSW01_02445 0.58 -2.4
488,197 - CSW01_02445 0.68 -0.8
488,210 + CSW01_02445 0.70 -0.2
488,218 - CSW01_02445 0.72 -2.0
488,227 + CSW01_02445 0.73 -0.3
488,324 + -1.8
488,324 + +0.5
488,332 - +0.2

Or see this region's nucleotide sequence