Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02380

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02375 and CSW01_02380 are separated by 255 nucleotidesCSW01_02380 and CSW01_02385 are separated by 37 nucleotidesCSW01_02385 and CSW01_02390 are separated by 10 nucleotidesCSW01_02390 and CSW01_02395 are separated by 48 nucleotidesCSW01_02395 and CSW01_02400 are separated by 109 nucleotides CSW01_02375: CSW01_02375 - methyl-accepting chemotaxis protein, at 478,034 to 479,659 _02375 CSW01_02380: CSW01_02380 - tRNA-Asn, at 479,915 to 479,990 _02380 CSW01_02385: CSW01_02385 - tRNA-Phe, at 480,028 to 480,103 _02385 CSW01_02390: CSW01_02390 - tRNA-Thr, at 480,114 to 480,189 _02390 CSW01_02395: CSW01_02395 - tRNA-Phe, at 480,238 to 480,313 _02395 CSW01_02400: CSW01_02400 - lytic murein transglycosylase, at 480,423 to 481,550 _02400 Position (kb) 479 480Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 478.979 kb on + strand, within CSW01_02375at 478.979 kb on + strand, within CSW01_02375at 478.979 kb on + strand, within CSW01_02375at 478.980 kb on - strand, within CSW01_02375at 478.984 kb on + strand, within CSW01_02375at 478.987 kb on - strand, within CSW01_02375at 478.987 kb on - strand, within CSW01_02375at 478.992 kb on - strand, within CSW01_02375at 479.093 kb on - strand, within CSW01_02375at 479.104 kb on + strand, within CSW01_02375at 479.149 kb on - strand, within CSW01_02375at 479.190 kb on + strand, within CSW01_02375at 479.198 kb on - strand, within CSW01_02375at 479.298 kb on + strand, within CSW01_02375at 479.339 kb on + strand, within CSW01_02375at 479.339 kb on + strand, within CSW01_02375at 479.344 kb on + strand, within CSW01_02375at 479.344 kb on + strand, within CSW01_02375at 479.344 kb on + strand, within CSW01_02375at 479.344 kb on + strand, within CSW01_02375at 479.349 kb on + strand, within CSW01_02375at 479.352 kb on - strand, within CSW01_02375at 479.352 kb on - strand, within CSW01_02375at 479.429 kb on + strand, within CSW01_02375at 479.460 kb on + strand, within CSW01_02375at 479.502 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.528 kb on - strandat 479.528 kb on - strandat 479.528 kb on - strandat 479.541 kb on - strandat 479.620 kb on - strandat 479.680 kb on + strandat 479.680 kb on + strandat 479.680 kb on + strandat 479.680 kb on + strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.735 kb on - strandat 479.735 kb on - strandat 479.835 kb on + strandat 479.939 kb on - strand, within CSW01_02380at 479.966 kb on + strand, within CSW01_02380at 480.158 kb on - strand, within CSW01_02390at 480.191 kb on + strandat 480.191 kb on + strandat 480.199 kb on - strandat 480.543 kb on - strand, within CSW01_02400at 480.543 kb on - strand, within CSW01_02400at 480.568 kb on + strand, within CSW01_02400at 480.577 kb on + strand, within CSW01_02400at 480.577 kb on + strand, within CSW01_02400at 480.577 kb on - strand, within CSW01_02400at 480.587 kb on - strand, within CSW01_02400at 480.632 kb on - strand, within CSW01_02400at 480.632 kb on - strand, within CSW01_02400at 480.634 kb on + strand, within CSW01_02400at 480.642 kb on - strand, within CSW01_02400at 480.688 kb on + strand, within CSW01_02400at 480.723 kb on - strand, within CSW01_02400at 480.723 kb on - strand, within CSW01_02400at 480.723 kb on - strand, within CSW01_02400at 480.753 kb on + strand, within CSW01_02400at 480.763 kb on + strand, within CSW01_02400at 480.764 kb on + strand, within CSW01_02400at 480.773 kb on + strand, within CSW01_02400at 480.823 kb on + strand, within CSW01_02400at 480.842 kb on + strand, within CSW01_02400at 480.843 kb on + strand, within CSW01_02400at 480.876 kb on + strand, within CSW01_02400at 480.876 kb on + strand, within CSW01_02400at 480.876 kb on + strand, within CSW01_02400at 480.884 kb on - strand, within CSW01_02400at 480.884 kb on - strand, within CSW01_02400at 480.884 kb on - strand, within CSW01_02400at 480.910 kb on + strand, within CSW01_02400at 480.910 kb on + strand, within CSW01_02400at 480.990 kb on - strand, within CSW01_02400

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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478,979 + CSW01_02375 0.58 -2.4
478,979 + CSW01_02375 0.58 -0.4
478,979 + CSW01_02375 0.58 +1.2
478,980 - CSW01_02375 0.58 -0.6
478,984 + CSW01_02375 0.58 -0.4
478,987 - CSW01_02375 0.59 -0.2
478,987 - CSW01_02375 0.59 +1.9
478,992 - CSW01_02375 0.59 +2.3
479,093 - CSW01_02375 0.65 -3.4
479,104 + CSW01_02375 0.66 +0.4
479,149 - CSW01_02375 0.69 +0.5
479,190 + CSW01_02375 0.71 +1.1
479,198 - CSW01_02375 0.72 +0.3
479,298 + CSW01_02375 0.78 -1.1
479,339 + CSW01_02375 0.80 -0.5
479,339 + CSW01_02375 0.80 -2.2
479,344 + CSW01_02375 0.81 -0.5
479,344 + CSW01_02375 0.81 -0.0
479,344 + CSW01_02375 0.81 -1.3
479,344 + CSW01_02375 0.81 -0.3
479,349 + CSW01_02375 0.81 -0.9
479,352 - CSW01_02375 0.81 -1.0
479,352 - CSW01_02375 0.81 -0.8
479,429 + CSW01_02375 0.86 -1.1
479,460 + CSW01_02375 0.88 -2.7
479,502 + -2.5
479,520 + +1.3
479,520 + -0.4
479,520 + +0.8
479,520 + -1.3
479,520 + +0.3
479,520 + +0.3
479,520 + -0.1
479,520 + -0.1
479,520 + -3.1
479,520 + +2.1
479,520 + +0.8
479,520 + +1.2
479,520 + -2.4
479,528 - +1.1
479,528 - -2.7
479,528 - +0.3
479,541 - +0.8
479,620 - -3.6
479,680 + +1.3
479,680 + +0.4
479,680 + -4.2
479,680 + -0.8
479,688 - -2.6
479,688 - +0.9
479,688 - +0.2
479,688 - -0.5
479,688 - -3.2
479,688 - +1.1
479,688 - -1.4
479,735 - -0.6
479,735 - -0.7
479,835 + +0.2
479,939 - CSW01_02380 0.32 -0.8
479,966 + CSW01_02380 0.67 -4.0
480,158 - CSW01_02390 0.58 +0.7
480,191 + -0.4
480,191 + -1.1
480,199 - -1.8
480,543 - CSW01_02400 0.11 -0.2
480,543 - CSW01_02400 0.11 -0.4
480,568 + CSW01_02400 0.13 +0.8
480,577 + CSW01_02400 0.14 -3.1
480,577 + CSW01_02400 0.14 -2.2
480,577 - CSW01_02400 0.14 -2.5
480,587 - CSW01_02400 0.15 -0.3
480,632 - CSW01_02400 0.19 -2.2
480,632 - CSW01_02400 0.19 +0.9
480,634 + CSW01_02400 0.19 -0.7
480,642 - CSW01_02400 0.19 -1.3
480,688 + CSW01_02400 0.23 -0.0
480,723 - CSW01_02400 0.27 +1.8
480,723 - CSW01_02400 0.27 +0.7
480,723 - CSW01_02400 0.27 +0.3
480,753 + CSW01_02400 0.29 +0.5
480,763 + CSW01_02400 0.30 -2.1
480,764 + CSW01_02400 0.30 -0.6
480,773 + CSW01_02400 0.31 +1.3
480,823 + CSW01_02400 0.35 +1.6
480,842 + CSW01_02400 0.37 +0.6
480,843 + CSW01_02400 0.37 +0.2
480,876 + CSW01_02400 0.40 +0.6
480,876 + CSW01_02400 0.40 +0.2
480,876 + CSW01_02400 0.40 +0.4
480,884 - CSW01_02400 0.41 +0.9
480,884 - CSW01_02400 0.41 +0.4
480,884 - CSW01_02400 0.41 +0.5
480,910 + CSW01_02400 0.43 -1.2
480,910 + CSW01_02400 0.43 -0.8
480,990 - CSW01_02400 0.50 +0.7

Or see this region's nucleotide sequence