Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02340 and CSW01_02345 are separated by 146 nucleotides CSW01_02345 and CSW01_02350 are separated by 154 nucleotides CSW01_02350 and CSW01_02355 are separated by 14 nucleotides CSW01_02355 and CSW01_02360 are separated by 28 nucleotides CSW01_02360 and CSW01_02365 are separated by 15 nucleotides CSW01_02365 and CSW01_02370 are separated by 41 nucleotides
CSW01_02340: CSW01_02340 - LPS assembly protein LptD, at 473,623 to 475,986
_02340
CSW01_02345: CSW01_02345 - molecular chaperone DjlA, at 476,133 to 476,987
_02345
CSW01_02350: CSW01_02350 - tRNA-Asn, at 477,142 to 477,217
_02350
CSW01_02355: CSW01_02355 - tRNA-Thr, at 477,232 to 477,307
_02355
CSW01_02360: CSW01_02360 - tRNA-Asn, at 477,336 to 477,411
_02360
CSW01_02365: CSW01_02365 - tRNA-Thr, at 477,427 to 477,502
_02365
CSW01_02370: CSW01_02370 - tRNA-Phe, at 477,544 to 477,619
_02370
Position (kb) 476
477 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 476.077 kb on - strand at 476.093 kb on - strand at 476.237 kb on - strand, within CSW01_02345 at 476.256 kb on + strand, within CSW01_02345 at 476.286 kb on - strand, within CSW01_02345 at 476.286 kb on - strand, within CSW01_02345 at 476.291 kb on - strand, within CSW01_02345 at 476.363 kb on - strand, within CSW01_02345 at 476.406 kb on - strand, within CSW01_02345 at 476.417 kb on + strand, within CSW01_02345 at 476.493 kb on + strand, within CSW01_02345 at 476.501 kb on - strand, within CSW01_02345 at 476.501 kb on - strand, within CSW01_02345 at 476.501 kb on - strand, within CSW01_02345 at 476.599 kb on - strand, within CSW01_02345 at 476.617 kb on + strand, within CSW01_02345 at 476.640 kb on - strand, within CSW01_02345 at 476.692 kb on + strand, within CSW01_02345 at 476.732 kb on + strand, within CSW01_02345 at 476.759 kb on + strand, within CSW01_02345 at 476.767 kb on - strand, within CSW01_02345 at 476.796 kb on - strand, within CSW01_02345 at 476.805 kb on - strand, within CSW01_02345 at 476.829 kb on - strand, within CSW01_02345 at 476.839 kb on - strand, within CSW01_02345 at 476.840 kb on + strand, within CSW01_02345 at 476.904 kb on + strand at 476.906 kb on + strand at 476.950 kb on + strand at 476.950 kb on + strand at 477.751 kb on + strand at 477.779 kb on - strand at 477.885 kb on + strand at 477.909 kb on - strand at 477.945 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 476,077 - +0.7 476,093 - +0.3 476,237 - CSW01_02345 0.12 +1.3 476,256 + CSW01_02345 0.14 +0.5 476,286 - CSW01_02345 0.18 -1.9 476,286 - CSW01_02345 0.18 -0.1 476,291 - CSW01_02345 0.18 +0.4 476,363 - CSW01_02345 0.27 +0.1 476,406 - CSW01_02345 0.32 +1.1 476,417 + CSW01_02345 0.33 -3.4 476,493 + CSW01_02345 0.42 -0.0 476,501 - CSW01_02345 0.43 -0.7 476,501 - CSW01_02345 0.43 +0.4 476,501 - CSW01_02345 0.43 +0.1 476,599 - CSW01_02345 0.55 +2.7 476,617 + CSW01_02345 0.57 -2.5 476,640 - CSW01_02345 0.59 -2.3 476,692 + CSW01_02345 0.65 -0.5 476,732 + CSW01_02345 0.70 +1.1 476,759 + CSW01_02345 0.73 -0.0 476,767 - CSW01_02345 0.74 +1.4 476,796 - CSW01_02345 0.78 +1.2 476,805 - CSW01_02345 0.79 +1.2 476,829 - CSW01_02345 0.81 +1.0 476,839 - CSW01_02345 0.83 +0.5 476,840 + CSW01_02345 0.83 +1.2 476,904 + -2.9 476,906 + -1.1 476,950 + -1.5 476,950 + +0.5 477,751 + +0.9 477,779 - -1.3 477,885 + +0.4 477,909 - -2.4 477,945 - +0.7
Or see this region's nucleotide sequence