Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02255

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02250 and CSW01_02255 are separated by 170 nucleotidesCSW01_02255 and CSW01_02260 overlap by 32 nucleotidesCSW01_02260 and CSW01_02265 are separated by 208 nucleotides CSW01_02250: CSW01_02250 - DUF3394 domain-containing protein, at 456,159 to 458,723 _02250 CSW01_02255: CSW01_02255 - C4-dicarboxylate ABC transporter substrate-binding protein, at 458,894 to 459,880 _02255 CSW01_02260: CSW01_02260 - C4-dicarboxylate ABC transporter substrate-binding protein, at 459,849 to 459,977 _02260 CSW01_02265: CSW01_02265 - arginine repressor, at 460,186 to 460,656 _02265 Position (kb) 458 459 460Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 457.936 kb on - strand, within CSW01_02250at 457.979 kb on + strand, within CSW01_02250at 457.979 kb on + strand, within CSW01_02250at 457.987 kb on - strand, within CSW01_02250at 458.280 kb on + strand, within CSW01_02250at 458.307 kb on + strand, within CSW01_02250at 458.307 kb on + strand, within CSW01_02250at 458.307 kb on + strand, within CSW01_02250at 458.315 kb on - strand, within CSW01_02250at 458.315 kb on - strand, within CSW01_02250at 458.332 kb on - strand, within CSW01_02250at 458.332 kb on - strand, within CSW01_02250at 458.335 kb on - strand, within CSW01_02250at 458.356 kb on - strand, within CSW01_02250at 458.376 kb on - strand, within CSW01_02250at 458.380 kb on + strand, within CSW01_02250at 458.388 kb on - strand, within CSW01_02250at 458.394 kb on + strand, within CSW01_02250at 458.394 kb on + strand, within CSW01_02250at 458.394 kb on + strand, within CSW01_02250at 458.447 kb on + strand, within CSW01_02250at 458.455 kb on - strand, within CSW01_02250at 458.524 kb on + strandat 458.557 kb on - strandat 458.562 kb on + strandat 458.573 kb on + strandat 458.573 kb on + strandat 458.600 kb on + strandat 458.610 kb on + strandat 458.615 kb on + strandat 458.620 kb on + strandat 458.620 kb on + strandat 458.634 kb on + strandat 458.665 kb on + strandat 458.693 kb on - strandat 458.693 kb on - strandat 458.703 kb on + strandat 458.705 kb on + strandat 458.707 kb on + strandat 458.726 kb on + strandat 458.726 kb on + strandat 458.726 kb on + strandat 458.734 kb on - strandat 458.734 kb on - strandat 458.822 kb on - strandat 458.972 kb on - strandat 459.008 kb on - strand, within CSW01_02255at 459.010 kb on + strand, within CSW01_02255at 459.010 kb on + strand, within CSW01_02255at 459.111 kb on - strand, within CSW01_02255at 459.118 kb on - strand, within CSW01_02255at 459.129 kb on + strand, within CSW01_02255at 459.145 kb on - strand, within CSW01_02255at 459.151 kb on + strand, within CSW01_02255at 459.151 kb on + strand, within CSW01_02255at 459.151 kb on + strand, within CSW01_02255at 459.151 kb on + strand, within CSW01_02255at 459.159 kb on - strand, within CSW01_02255at 459.159 kb on - strand, within CSW01_02255at 459.159 kb on - strand, within CSW01_02255at 459.159 kb on - strand, within CSW01_02255at 459.159 kb on - strand, within CSW01_02255at 459.159 kb on - strand, within CSW01_02255at 459.168 kb on + strand, within CSW01_02255at 459.168 kb on + strand, within CSW01_02255at 459.240 kb on - strand, within CSW01_02255at 459.333 kb on - strand, within CSW01_02255at 459.352 kb on + strand, within CSW01_02255at 459.360 kb on - strand, within CSW01_02255at 459.360 kb on - strand, within CSW01_02255at 459.455 kb on + strand, within CSW01_02255at 459.535 kb on + strand, within CSW01_02255at 459.550 kb on - strand, within CSW01_02255at 459.580 kb on + strand, within CSW01_02255at 459.667 kb on - strand, within CSW01_02255at 459.805 kb on - strandat 459.805 kb on - strandat 459.909 kb on + strand, within CSW01_02260at 459.917 kb on - strand, within CSW01_02260at 459.966 kb on - strandat 460.113 kb on + strandat 460.182 kb on + strandat 460.217 kb on + strandat 460.225 kb on - strandat 460.225 kb on - strandat 460.225 kb on - strandat 460.225 kb on - strandat 460.225 kb on - strandat 460.225 kb on - strandat 460.333 kb on + strand, within CSW01_02265at 460.348 kb on + strand, within CSW01_02265at 460.356 kb on - strand, within CSW01_02265at 460.358 kb on + strand, within CSW01_02265at 460.411 kb on - strand, within CSW01_02265at 460.415 kb on + strand, within CSW01_02265at 460.435 kb on + strand, within CSW01_02265at 460.435 kb on + strand, within CSW01_02265at 460.443 kb on - strand, within CSW01_02265at 460.453 kb on + strand, within CSW01_02265at 460.453 kb on + strand, within CSW01_02265at 460.483 kb on + strand, within CSW01_02265at 460.491 kb on - strand, within CSW01_02265at 460.548 kb on - strand, within CSW01_02265at 460.610 kb on + strandat 460.610 kb on + strandat 460.619 kb on + strandat 460.626 kb on - strandat 460.626 kb on - strandat 460.672 kb on + strandat 460.783 kb on - strandat 460.795 kb on - strandat 460.863 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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457,936 - CSW01_02250 0.69 +0.5
457,979 + CSW01_02250 0.71 -0.4
457,979 + CSW01_02250 0.71 +1.4
457,987 - CSW01_02250 0.71 +2.6
458,280 + CSW01_02250 0.83 -2.4
458,307 + CSW01_02250 0.84 +0.1
458,307 + CSW01_02250 0.84 -1.7
458,307 + CSW01_02250 0.84 -0.4
458,315 - CSW01_02250 0.84 +0.1
458,315 - CSW01_02250 0.84 +0.6
458,332 - CSW01_02250 0.85 +2.0
458,332 - CSW01_02250 0.85 -0.8
458,335 - CSW01_02250 0.85 -0.9
458,356 - CSW01_02250 0.86 +0.6
458,376 - CSW01_02250 0.86 -0.3
458,380 + CSW01_02250 0.87 +1.3
458,388 - CSW01_02250 0.87 +0.9
458,394 + CSW01_02250 0.87 -0.8
458,394 + CSW01_02250 0.87 +0.5
458,394 + CSW01_02250 0.87 -2.5
458,447 + CSW01_02250 0.89 +0.8
458,455 - CSW01_02250 0.90 -2.6
458,524 + +1.7
458,557 - +0.3
458,562 + -1.6
458,573 + +0.0
458,573 + +0.7
458,600 + -2.8
458,610 + +1.6
458,615 + +1.7
458,620 + -1.7
458,620 + +0.9
458,634 + +1.6
458,665 + -2.0
458,693 - +0.0
458,693 - +0.0
458,703 + +1.4
458,705 + +0.6
458,707 + +1.4
458,726 + +1.4
458,726 + -1.9
458,726 + +0.4
458,734 - -0.2
458,734 - -0.5
458,822 - +1.5
458,972 - -0.9
459,008 - CSW01_02255 0.12 +0.9
459,010 + CSW01_02255 0.12 +1.5
459,010 + CSW01_02255 0.12 +1.1
459,111 - CSW01_02255 0.22 +1.9
459,118 - CSW01_02255 0.23 +0.2
459,129 + CSW01_02255 0.24 +2.5
459,145 - CSW01_02255 0.25 +0.1
459,151 + CSW01_02255 0.26 +0.5
459,151 + CSW01_02255 0.26 +1.1
459,151 + CSW01_02255 0.26 +1.1
459,151 + CSW01_02255 0.26 +0.2
459,159 - CSW01_02255 0.27 +1.0
459,159 - CSW01_02255 0.27 +1.2
459,159 - CSW01_02255 0.27 +0.6
459,159 - CSW01_02255 0.27 +0.2
459,159 - CSW01_02255 0.27 +1.9
459,159 - CSW01_02255 0.27 +1.4
459,168 + CSW01_02255 0.28 +1.8
459,168 + CSW01_02255 0.28 -0.2
459,240 - CSW01_02255 0.35 -0.3
459,333 - CSW01_02255 0.44 -0.8
459,352 + CSW01_02255 0.46 +2.2
459,360 - CSW01_02255 0.47 +0.7
459,360 - CSW01_02255 0.47 +1.1
459,455 + CSW01_02255 0.57 -0.7
459,535 + CSW01_02255 0.65 -1.1
459,550 - CSW01_02255 0.66 -0.4
459,580 + CSW01_02255 0.70 +0.5
459,667 - CSW01_02255 0.78 +0.6
459,805 - +0.6
459,805 - +1.3
459,909 + CSW01_02260 0.47 -2.2
459,917 - CSW01_02260 0.53 +1.1
459,966 - +2.0
460,113 + +1.2
460,182 + -0.9
460,217 + +0.7
460,225 - +0.1
460,225 - -3.3
460,225 - +1.2
460,225 - -0.2
460,225 - +0.1
460,225 - +0.1
460,333 + CSW01_02265 0.31 -0.4
460,348 + CSW01_02265 0.34 -2.7
460,356 - CSW01_02265 0.36 -0.1
460,358 + CSW01_02265 0.37 +0.4
460,411 - CSW01_02265 0.48 +0.6
460,415 + CSW01_02265 0.49 +0.9
460,435 + CSW01_02265 0.53 -2.6
460,435 + CSW01_02265 0.53 -3.0
460,443 - CSW01_02265 0.55 +0.9
460,453 + CSW01_02265 0.57 -0.2
460,453 + CSW01_02265 0.57 -2.8
460,483 + CSW01_02265 0.63 +1.0
460,491 - CSW01_02265 0.65 +0.0
460,548 - CSW01_02265 0.77 -0.7
460,610 + -3.0
460,610 + +1.7
460,619 + -0.9
460,626 - +0.6
460,626 - -3.0
460,672 + -0.2
460,783 - -2.1
460,795 - -2.2
460,863 - +0.6

Or see this region's nucleotide sequence