Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01840

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01830 and CSW01_01835 are separated by 171 nucleotidesCSW01_01835 and CSW01_01840 are separated by 32 nucleotidesCSW01_01840 and CSW01_01845 are separated by 45 nucleotides CSW01_01830: CSW01_01830 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 367,771 to 368,718 _01830 CSW01_01835: CSW01_01835 - RNA-binding protein Hfq, at 368,890 to 369,153 _01835 CSW01_01840: CSW01_01840 - GTPase HflX, at 369,186 to 370,475 _01840 CSW01_01845: CSW01_01845 - protease modulator HflK, at 370,521 to 371,708 _01845 Position (kb) 369 370 371Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 368.220 kb on + strand, within CSW01_01830at 368.347 kb on + strand, within CSW01_01830at 368.378 kb on + strand, within CSW01_01830at 368.378 kb on + strand, within CSW01_01830at 368.386 kb on - strand, within CSW01_01830at 368.453 kb on - strand, within CSW01_01830at 368.629 kb on - strandat 368.637 kb on - strandat 368.637 kb on - strandat 368.720 kb on - strandat 368.779 kb on - strandat 368.906 kb on - strandat 368.908 kb on + strandat 368.983 kb on - strand, within CSW01_01835at 369.143 kb on + strandat 369.264 kb on - strandat 369.299 kb on + strandat 369.299 kb on + strandat 369.307 kb on - strandat 369.338 kb on - strand, within CSW01_01840at 369.365 kb on + strand, within CSW01_01840at 369.373 kb on - strand, within CSW01_01840at 369.433 kb on + strand, within CSW01_01840at 369.498 kb on + strand, within CSW01_01840at 369.498 kb on + strand, within CSW01_01840at 369.506 kb on - strand, within CSW01_01840at 369.506 kb on - strand, within CSW01_01840at 369.507 kb on - strand, within CSW01_01840at 369.575 kb on + strand, within CSW01_01840at 369.636 kb on + strand, within CSW01_01840at 369.639 kb on - strand, within CSW01_01840at 369.644 kb on - strand, within CSW01_01840at 369.662 kb on + strand, within CSW01_01840at 369.744 kb on - strand, within CSW01_01840at 369.803 kb on - strand, within CSW01_01840at 369.814 kb on + strand, within CSW01_01840at 369.846 kb on + strand, within CSW01_01840at 369.891 kb on - strand, within CSW01_01840at 369.921 kb on - strand, within CSW01_01840at 370.168 kb on - strand, within CSW01_01840at 370.176 kb on - strand, within CSW01_01840at 370.190 kb on - strand, within CSW01_01840at 370.200 kb on + strand, within CSW01_01840at 370.201 kb on - strand, within CSW01_01840at 370.215 kb on + strand, within CSW01_01840at 370.223 kb on - strand, within CSW01_01840at 370.231 kb on - strand, within CSW01_01840at 370.244 kb on - strand, within CSW01_01840at 370.244 kb on - strand, within CSW01_01840at 370.256 kb on + strand, within CSW01_01840at 370.260 kb on - strand, within CSW01_01840at 370.366 kb on + strandat 370.424 kb on - strandat 370.470 kb on + strandat 370.533 kb on - strandat 370.665 kb on - strand, within CSW01_01845at 370.729 kb on + strand, within CSW01_01845at 370.784 kb on - strand, within CSW01_01845at 370.807 kb on + strand, within CSW01_01845at 370.812 kb on + strand, within CSW01_01845at 370.812 kb on + strand, within CSW01_01845at 370.812 kb on + strand, within CSW01_01845at 370.812 kb on + strand, within CSW01_01845at 370.815 kb on - strand, within CSW01_01845at 370.820 kb on - strand, within CSW01_01845at 370.820 kb on - strand, within CSW01_01845at 370.820 kb on - strand, within CSW01_01845at 370.859 kb on - strand, within CSW01_01845at 370.924 kb on + strand, within CSW01_01845at 370.925 kb on - strand, within CSW01_01845at 370.932 kb on - strand, within CSW01_01845at 370.932 kb on - strand, within CSW01_01845at 370.932 kb on - strand, within CSW01_01845at 370.932 kb on - strand, within CSW01_01845at 370.932 kb on - strand, within CSW01_01845at 370.955 kb on + strand, within CSW01_01845at 370.975 kb on - strand, within CSW01_01845at 370.977 kb on + strand, within CSW01_01845at 371.055 kb on - strand, within CSW01_01845at 371.081 kb on - strand, within CSW01_01845at 371.146 kb on + strand, within CSW01_01845at 371.201 kb on + strand, within CSW01_01845at 371.221 kb on - strand, within CSW01_01845at 371.298 kb on + strand, within CSW01_01845at 371.333 kb on - strand, within CSW01_01845at 371.333 kb on - strand, within CSW01_01845at 371.363 kb on + strand, within CSW01_01845at 371.432 kb on + strand, within CSW01_01845at 371.440 kb on - strand, within CSW01_01845

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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368,220 + CSW01_01830 0.47 +2.7
368,347 + CSW01_01830 0.61 +2.2
368,378 + CSW01_01830 0.64 +2.2
368,378 + CSW01_01830 0.64 +2.1
368,386 - CSW01_01830 0.65 +1.0
368,453 - CSW01_01830 0.72 -3.4
368,629 - +2.1
368,637 - +2.7
368,637 - +1.1
368,720 - +1.2
368,779 - -2.4
368,906 - -0.4
368,908 + -1.2
368,983 - CSW01_01835 0.35 -1.7
369,143 + +0.8
369,264 - +0.1
369,299 + +0.1
369,299 + -2.6
369,307 - -2.8
369,338 - CSW01_01840 0.12 -0.1
369,365 + CSW01_01840 0.14 -1.4
369,373 - CSW01_01840 0.14 -1.4
369,433 + CSW01_01840 0.19 -2.0
369,498 + CSW01_01840 0.24 -0.3
369,498 + CSW01_01840 0.24 +1.8
369,506 - CSW01_01840 0.25 -2.0
369,506 - CSW01_01840 0.25 -1.6
369,507 - CSW01_01840 0.25 -0.7
369,575 + CSW01_01840 0.30 +0.5
369,636 + CSW01_01840 0.35 -1.4
369,639 - CSW01_01840 0.35 -0.6
369,644 - CSW01_01840 0.36 -1.9
369,662 + CSW01_01840 0.37 -0.6
369,744 - CSW01_01840 0.43 +0.6
369,803 - CSW01_01840 0.48 -2.9
369,814 + CSW01_01840 0.49 -1.9
369,846 + CSW01_01840 0.51 -2.6
369,891 - CSW01_01840 0.55 -2.9
369,921 - CSW01_01840 0.57 -2.6
370,168 - CSW01_01840 0.76 +0.1
370,176 - CSW01_01840 0.77 -1.0
370,190 - CSW01_01840 0.78 +0.9
370,200 + CSW01_01840 0.79 +3.4
370,201 - CSW01_01840 0.79 -4.0
370,215 + CSW01_01840 0.80 +0.1
370,223 - CSW01_01840 0.80 -3.7
370,231 - CSW01_01840 0.81 +1.5
370,244 - CSW01_01840 0.82 -1.0
370,244 - CSW01_01840 0.82 +1.5
370,256 + CSW01_01840 0.83 +1.1
370,260 - CSW01_01840 0.83 -2.6
370,366 + -1.5
370,424 - +0.7
370,470 + +0.5
370,533 - -2.2
370,665 - CSW01_01845 0.12 +1.0
370,729 + CSW01_01845 0.18 -1.0
370,784 - CSW01_01845 0.22 -3.6
370,807 + CSW01_01845 0.24 +0.2
370,812 + CSW01_01845 0.24 +1.2
370,812 + CSW01_01845 0.24 +0.1
370,812 + CSW01_01845 0.24 +1.2
370,812 + CSW01_01845 0.24 -2.7
370,815 - CSW01_01845 0.25 -1.1
370,820 - CSW01_01845 0.25 -1.0
370,820 - CSW01_01845 0.25 -0.8
370,820 - CSW01_01845 0.25 -1.0
370,859 - CSW01_01845 0.28 +0.5
370,924 + CSW01_01845 0.34 +0.8
370,925 - CSW01_01845 0.34 +0.5
370,932 - CSW01_01845 0.35 -0.7
370,932 - CSW01_01845 0.35 +0.6
370,932 - CSW01_01845 0.35 -3.4
370,932 - CSW01_01845 0.35 +0.3
370,932 - CSW01_01845 0.35 +0.9
370,955 + CSW01_01845 0.37 +1.1
370,975 - CSW01_01845 0.38 +0.9
370,977 + CSW01_01845 0.38 -1.5
371,055 - CSW01_01845 0.45 -2.1
371,081 - CSW01_01845 0.47 -2.8
371,146 + CSW01_01845 0.53 -3.6
371,201 + CSW01_01845 0.57 -2.0
371,221 - CSW01_01845 0.59 -0.1
371,298 + CSW01_01845 0.65 -2.5
371,333 - CSW01_01845 0.68 -0.2
371,333 - CSW01_01845 0.68 -2.9
371,363 + CSW01_01845 0.71 +0.3
371,432 + CSW01_01845 0.77 -0.0
371,440 - CSW01_01845 0.77 +0.1

Or see this region's nucleotide sequence