Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01705 and CSW01_01710 are separated by 110 nucleotides CSW01_01710 and CSW01_01715 are separated by 144 nucleotides CSW01_01715 and CSW01_01720 are separated by 242 nucleotides
CSW01_01705: CSW01_01705 - DNA-directed RNA polymerase subunit beta', at 343,244 to 347,449
_01705
CSW01_01710: CSW01_01710 - Rsd/AlgQ family anti-sigma factor, at 347,560 to 348,054
_01710
CSW01_01715: CSW01_01715 - NADH pyrophosphatase, at 348,199 to 349,008
_01715
CSW01_01720: CSW01_01720 - uroporphyrinogen decarboxylase, at 349,251 to 350,330
_01720
Position (kb) 348
349
350 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 347.479 kb on + strand at 347.557 kb on + strand at 347.585 kb on - strand at 347.626 kb on + strand, within CSW01_01710 at 347.669 kb on + strand, within CSW01_01710 at 347.781 kb on + strand, within CSW01_01710 at 347.789 kb on - strand, within CSW01_01710 at 347.878 kb on - strand, within CSW01_01710 at 347.888 kb on + strand, within CSW01_01710 at 347.888 kb on + strand, within CSW01_01710 at 348.001 kb on + strand, within CSW01_01710 at 348.076 kb on - strand at 348.274 kb on - strand at 348.285 kb on + strand, within CSW01_01715 at 348.320 kb on + strand, within CSW01_01715 at 348.325 kb on + strand, within CSW01_01715 at 348.375 kb on + strand, within CSW01_01715 at 348.382 kb on + strand, within CSW01_01715 at 348.390 kb on - strand, within CSW01_01715 at 348.582 kb on - strand, within CSW01_01715 at 348.595 kb on + strand, within CSW01_01715 at 348.595 kb on + strand, within CSW01_01715 at 348.595 kb on + strand, within CSW01_01715 at 348.631 kb on - strand, within CSW01_01715 at 348.688 kb on + strand, within CSW01_01715 at 348.688 kb on + strand, within CSW01_01715 at 348.688 kb on + strand, within CSW01_01715 at 348.688 kb on + strand, within CSW01_01715 at 348.688 kb on + strand, within CSW01_01715 at 348.688 kb on + strand, within CSW01_01715 at 348.688 kb on + strand, within CSW01_01715 at 348.688 kb on + strand, within CSW01_01715 at 348.688 kb on + strand, within CSW01_01715 at 348.696 kb on - strand, within CSW01_01715 at 348.696 kb on - strand, within CSW01_01715 at 348.696 kb on - strand, within CSW01_01715 at 348.696 kb on - strand, within CSW01_01715 at 348.696 kb on - strand, within CSW01_01715 at 348.696 kb on - strand, within CSW01_01715 at 348.696 kb on - strand, within CSW01_01715 at 348.696 kb on - strand, within CSW01_01715 at 348.696 kb on - strand, within CSW01_01715 at 348.727 kb on - strand, within CSW01_01715 at 348.731 kb on + strand, within CSW01_01715 at 348.731 kb on + strand, within CSW01_01715 at 348.733 kb on + strand, within CSW01_01715 at 348.739 kb on - strand, within CSW01_01715 at 348.739 kb on - strand, within CSW01_01715 at 348.739 kb on - strand, within CSW01_01715 at 348.766 kb on - strand, within CSW01_01715 at 348.804 kb on - strand, within CSW01_01715 at 348.870 kb on + strand, within CSW01_01715 at 348.870 kb on + strand, within CSW01_01715 at 348.870 kb on + strand, within CSW01_01715 at 348.878 kb on - strand, within CSW01_01715 at 348.878 kb on - strand, within CSW01_01715 at 348.897 kb on - strand, within CSW01_01715 at 348.969 kb on - strand at 349.071 kb on + strand at 349.139 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 347,479 + +0.7 347,557 + +0.1 347,585 - -0.2 347,626 + CSW01_01710 0.13 +0.2 347,669 + CSW01_01710 0.22 +1.4 347,781 + CSW01_01710 0.45 -1.4 347,789 - CSW01_01710 0.46 +2.4 347,878 - CSW01_01710 0.64 -0.8 347,888 + CSW01_01710 0.66 +0.9 347,888 + CSW01_01710 0.66 -0.5 348,001 + CSW01_01710 0.89 +0.9 348,076 - -0.4 348,274 - +0.4 348,285 + CSW01_01715 0.11 +1.1 348,320 + CSW01_01715 0.15 -0.2 348,325 + CSW01_01715 0.16 -3.9 348,375 + CSW01_01715 0.22 -3.5 348,382 + CSW01_01715 0.23 +0.2 348,390 - CSW01_01715 0.24 -1.1 348,582 - CSW01_01715 0.47 -0.5 348,595 + CSW01_01715 0.49 -1.0 348,595 + CSW01_01715 0.49 -0.9 348,595 + CSW01_01715 0.49 -3.6 348,631 - CSW01_01715 0.53 +1.8 348,688 + CSW01_01715 0.60 +0.9 348,688 + CSW01_01715 0.60 +1.3 348,688 + CSW01_01715 0.60 +2.4 348,688 + CSW01_01715 0.60 +0.0 348,688 + CSW01_01715 0.60 +1.2 348,688 + CSW01_01715 0.60 -1.2 348,688 + CSW01_01715 0.60 -1.4 348,688 + CSW01_01715 0.60 +1.0 348,688 + CSW01_01715 0.60 -1.7 348,696 - CSW01_01715 0.61 -1.3 348,696 - CSW01_01715 0.61 -2.6 348,696 - CSW01_01715 0.61 +0.4 348,696 - CSW01_01715 0.61 -2.7 348,696 - CSW01_01715 0.61 -1.7 348,696 - CSW01_01715 0.61 -2.2 348,696 - CSW01_01715 0.61 -0.9 348,696 - CSW01_01715 0.61 +0.3 348,696 - CSW01_01715 0.61 +1.0 348,727 - CSW01_01715 0.65 +0.5 348,731 + CSW01_01715 0.66 +1.4 348,731 + CSW01_01715 0.66 -1.7 348,733 + CSW01_01715 0.66 +1.4 348,739 - CSW01_01715 0.67 -3.5 348,739 - CSW01_01715 0.67 -0.8 348,739 - CSW01_01715 0.67 +1.2 348,766 - CSW01_01715 0.70 -2.4 348,804 - CSW01_01715 0.75 +0.8 348,870 + CSW01_01715 0.83 -2.7 348,870 + CSW01_01715 0.83 -0.0 348,870 + CSW01_01715 0.83 +1.5 348,878 - CSW01_01715 0.84 -3.3 348,878 - CSW01_01715 0.84 +1.1 348,897 - CSW01_01715 0.86 -1.9 348,969 - -1.4 349,071 + +0.7 349,139 - +0.4
Or see this region's nucleotide sequence