Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01500

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01495 and CSW01_01500 are separated by 112 nucleotidesCSW01_01500 and CSW01_01505 are separated by 208 nucleotides CSW01_01495: CSW01_01495 - tRNA dihydrouridine synthase DusB, at 298,949 to 299,944 _01495 CSW01_01500: CSW01_01500 - 50S ribosomal protein L11 methyltransferase, at 300,057 to 300,944 _01500 CSW01_01505: CSW01_01505 - acetyl-CoA carboxylase biotin carboxylase subunit, at 301,153 to 302,496 _01505 Position (kb) 300 301Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 299.092 kb on + strand, within CSW01_01495at 299.100 kb on - strand, within CSW01_01495at 299.106 kb on + strand, within CSW01_01495at 299.114 kb on - strand, within CSW01_01495at 299.114 kb on - strand, within CSW01_01495at 299.147 kb on + strand, within CSW01_01495at 299.155 kb on - strand, within CSW01_01495at 299.181 kb on + strand, within CSW01_01495at 299.183 kb on + strand, within CSW01_01495at 299.209 kb on - strand, within CSW01_01495at 299.231 kb on + strand, within CSW01_01495at 299.239 kb on - strand, within CSW01_01495at 299.276 kb on + strand, within CSW01_01495at 299.286 kb on - strand, within CSW01_01495at 299.310 kb on + strand, within CSW01_01495at 299.336 kb on + strand, within CSW01_01495at 299.344 kb on - strand, within CSW01_01495at 299.356 kb on + strand, within CSW01_01495at 299.364 kb on - strand, within CSW01_01495at 299.364 kb on - strand, within CSW01_01495at 299.366 kb on + strand, within CSW01_01495at 299.374 kb on - strand, within CSW01_01495at 299.374 kb on - strand, within CSW01_01495at 299.382 kb on + strand, within CSW01_01495at 299.390 kb on - strand, within CSW01_01495at 299.404 kb on - strand, within CSW01_01495at 299.438 kb on + strand, within CSW01_01495at 299.438 kb on + strand, within CSW01_01495at 299.446 kb on - strand, within CSW01_01495at 299.568 kb on - strand, within CSW01_01495at 299.568 kb on - strand, within CSW01_01495at 299.568 kb on - strand, within CSW01_01495at 299.568 kb on - strand, within CSW01_01495at 299.578 kb on - strand, within CSW01_01495at 299.586 kb on - strand, within CSW01_01495at 299.666 kb on - strand, within CSW01_01495at 299.681 kb on - strand, within CSW01_01495at 299.687 kb on - strand, within CSW01_01495at 299.704 kb on + strand, within CSW01_01495at 299.734 kb on - strand, within CSW01_01495at 299.750 kb on - strand, within CSW01_01495at 299.781 kb on + strand, within CSW01_01495at 299.789 kb on - strand, within CSW01_01495at 299.789 kb on - strand, within CSW01_01495at 299.920 kb on + strandat 300.018 kb on + strandat 300.050 kb on + strandat 300.050 kb on + strandat 300.058 kb on - strandat 300.124 kb on - strandat 300.196 kb on + strand, within CSW01_01500at 300.196 kb on + strand, within CSW01_01500at 300.204 kb on - strand, within CSW01_01500at 300.236 kb on - strand, within CSW01_01500at 300.238 kb on + strand, within CSW01_01500at 300.244 kb on + strand, within CSW01_01500at 300.252 kb on - strand, within CSW01_01500at 300.265 kb on + strand, within CSW01_01500at 300.340 kb on + strand, within CSW01_01500at 300.348 kb on - strand, within CSW01_01500at 300.390 kb on - strand, within CSW01_01500at 300.400 kb on + strand, within CSW01_01500at 300.473 kb on + strand, within CSW01_01500at 300.481 kb on - strand, within CSW01_01500at 300.481 kb on - strand, within CSW01_01500at 300.492 kb on + strand, within CSW01_01500at 300.499 kb on - strand, within CSW01_01500at 300.499 kb on - strand, within CSW01_01500at 300.501 kb on - strand, within CSW01_01500at 300.501 kb on - strand, within CSW01_01500at 300.508 kb on + strand, within CSW01_01500at 300.508 kb on + strand, within CSW01_01500at 300.508 kb on + strand, within CSW01_01500at 300.508 kb on + strand, within CSW01_01500at 300.508 kb on + strand, within CSW01_01500at 300.516 kb on - strand, within CSW01_01500at 300.524 kb on - strand, within CSW01_01500at 300.534 kb on + strand, within CSW01_01500at 300.535 kb on + strand, within CSW01_01500at 300.581 kb on - strand, within CSW01_01500at 300.590 kb on + strand, within CSW01_01500at 300.598 kb on - strand, within CSW01_01500at 300.604 kb on - strand, within CSW01_01500at 300.609 kb on - strand, within CSW01_01500at 300.628 kb on + strand, within CSW01_01500at 300.636 kb on - strand, within CSW01_01500at 300.747 kb on + strand, within CSW01_01500at 300.755 kb on - strand, within CSW01_01500at 300.765 kb on - strand, within CSW01_01500at 300.765 kb on - strand, within CSW01_01500at 300.765 kb on - strand, within CSW01_01500at 300.784 kb on - strand, within CSW01_01500at 300.807 kb on + strand, within CSW01_01500at 300.809 kb on + strand, within CSW01_01500at 300.814 kb on + strand, within CSW01_01500at 300.852 kb on + strand, within CSW01_01500at 300.852 kb on + strand, within CSW01_01500at 300.860 kb on - strandat 300.970 kb on - strandat 300.978 kb on + strandat 300.983 kb on + strandat 300.988 kb on - strandat 300.988 kb on - strandat 300.988 kb on - strandat 300.988 kb on - strandat 300.988 kb on - strandat 301.072 kb on - strandat 301.189 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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299,092 + CSW01_01495 0.14 -0.2
299,100 - CSW01_01495 0.15 -3.3
299,106 + CSW01_01495 0.16 +0.1
299,114 - CSW01_01495 0.17 +0.4
299,114 - CSW01_01495 0.17 -2.7
299,147 + CSW01_01495 0.20 -1.9
299,155 - CSW01_01495 0.21 -3.0
299,181 + CSW01_01495 0.23 -1.2
299,183 + CSW01_01495 0.23 -1.4
299,209 - CSW01_01495 0.26 +0.1
299,231 + CSW01_01495 0.28 -3.2
299,239 - CSW01_01495 0.29 -3.6
299,276 + CSW01_01495 0.33 -0.5
299,286 - CSW01_01495 0.34 +2.6
299,310 + CSW01_01495 0.36 -1.6
299,336 + CSW01_01495 0.39 -1.5
299,344 - CSW01_01495 0.40 +0.3
299,356 + CSW01_01495 0.41 -1.1
299,364 - CSW01_01495 0.42 -1.0
299,364 - CSW01_01495 0.42 +1.1
299,366 + CSW01_01495 0.42 -1.4
299,374 - CSW01_01495 0.43 -0.0
299,374 - CSW01_01495 0.43 +0.1
299,382 + CSW01_01495 0.43 -1.6
299,390 - CSW01_01495 0.44 +0.9
299,404 - CSW01_01495 0.46 -4.0
299,438 + CSW01_01495 0.49 -2.1
299,438 + CSW01_01495 0.49 -2.5
299,446 - CSW01_01495 0.50 +1.5
299,568 - CSW01_01495 0.62 -2.0
299,568 - CSW01_01495 0.62 -3.0
299,568 - CSW01_01495 0.62 -2.7
299,568 - CSW01_01495 0.62 +1.1
299,578 - CSW01_01495 0.63 -1.2
299,586 - CSW01_01495 0.64 -0.7
299,666 - CSW01_01495 0.72 +1.3
299,681 - CSW01_01495 0.73 +0.7
299,687 - CSW01_01495 0.74 -1.7
299,704 + CSW01_01495 0.76 -0.7
299,734 - CSW01_01495 0.79 -0.3
299,750 - CSW01_01495 0.80 -0.6
299,781 + CSW01_01495 0.84 -3.8
299,789 - CSW01_01495 0.84 -0.7
299,789 - CSW01_01495 0.84 -2.3
299,920 + -1.1
300,018 + -1.2
300,050 + -1.0
300,050 + -4.3
300,058 - +0.8
300,124 - -3.0
300,196 + CSW01_01500 0.16 -0.3
300,196 + CSW01_01500 0.16 +1.0
300,204 - CSW01_01500 0.17 +0.8
300,236 - CSW01_01500 0.20 -3.5
300,238 + CSW01_01500 0.20 +0.1
300,244 + CSW01_01500 0.21 -0.1
300,252 - CSW01_01500 0.22 -2.7
300,265 + CSW01_01500 0.23 -1.8
300,340 + CSW01_01500 0.32 -2.2
300,348 - CSW01_01500 0.33 +0.4
300,390 - CSW01_01500 0.38 +1.1
300,400 + CSW01_01500 0.39 -2.9
300,473 + CSW01_01500 0.47 -1.7
300,481 - CSW01_01500 0.48 -2.9
300,481 - CSW01_01500 0.48 -3.2
300,492 + CSW01_01500 0.49 -0.1
300,499 - CSW01_01500 0.50 -2.6
300,499 - CSW01_01500 0.50 +0.8
300,501 - CSW01_01500 0.50 -3.0
300,501 - CSW01_01500 0.50 -2.6
300,508 + CSW01_01500 0.51 +0.3
300,508 + CSW01_01500 0.51 -1.4
300,508 + CSW01_01500 0.51 -1.3
300,508 + CSW01_01500 0.51 -2.2
300,508 + CSW01_01500 0.51 -4.2
300,516 - CSW01_01500 0.52 +0.7
300,524 - CSW01_01500 0.53 +0.4
300,534 + CSW01_01500 0.54 -1.2
300,535 + CSW01_01500 0.54 -3.3
300,581 - CSW01_01500 0.59 -1.7
300,590 + CSW01_01500 0.60 -2.9
300,598 - CSW01_01500 0.61 -1.4
300,604 - CSW01_01500 0.62 +1.3
300,609 - CSW01_01500 0.62 -0.8
300,628 + CSW01_01500 0.64 -3.4
300,636 - CSW01_01500 0.65 +0.0
300,747 + CSW01_01500 0.78 -3.2
300,755 - CSW01_01500 0.79 +2.0
300,765 - CSW01_01500 0.80 +0.2
300,765 - CSW01_01500 0.80 +1.1
300,765 - CSW01_01500 0.80 +1.2
300,784 - CSW01_01500 0.82 -2.4
300,807 + CSW01_01500 0.84 +0.9
300,809 + CSW01_01500 0.85 +0.9
300,814 + CSW01_01500 0.85 +0.9
300,852 + CSW01_01500 0.90 +0.1
300,852 + CSW01_01500 0.90 +2.5
300,860 - +0.0
300,970 - -2.5
300,978 + +0.1
300,983 + +0.9
300,988 - -0.6
300,988 - -2.3
300,988 - +2.4
300,988 - +0.9
300,988 - -0.4
301,072 - -4.3
301,189 - +2.4

Or see this region's nucleotide sequence