Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01435 and CSW01_01440 are separated by 699 nucleotides CSW01_01440 and CSW01_01445 are separated by 109 nucleotides
CSW01_01435: CSW01_01435 - transcriptional regulator CadC, at 282,133 to 283,692
_01435
CSW01_01440: CSW01_01440 - lysine:cadaverine antiporter, at 284,392 to 285,729
_01440
CSW01_01445: CSW01_01445 - lysine decarboxylase, at 285,839 to 287,974
_01445
Position (kb) 284
285
286 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 283.411 kb on - strand, within CSW01_01435 at 283.413 kb on + strand, within CSW01_01435 at 283.413 kb on + strand, within CSW01_01435 at 283.464 kb on + strand, within CSW01_01435 at 283.464 kb on + strand, within CSW01_01435 at 283.472 kb on - strand, within CSW01_01435 at 283.472 kb on - strand, within CSW01_01435 at 283.472 kb on - strand, within CSW01_01435 at 283.496 kb on - strand, within CSW01_01435 at 283.529 kb on - strand, within CSW01_01435 at 283.529 kb on - strand, within CSW01_01435 at 283.541 kb on + strand at 283.547 kb on + strand at 283.549 kb on - strand at 283.560 kb on - strand at 283.676 kb on - strand at 283.695 kb on - strand at 283.759 kb on - strand at 283.791 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.824 kb on + strand at 283.870 kb on + strand at 284.080 kb on - strand at 284.080 kb on - strand at 284.080 kb on - strand at 284.089 kb on + strand at 284.100 kb on - strand at 284.216 kb on + strand at 284.281 kb on + strand at 284.281 kb on + strand at 284.281 kb on + strand at 284.281 kb on + strand at 284.289 kb on - strand at 284.304 kb on + strand at 284.336 kb on + strand at 284.342 kb on - strand at 284.434 kb on + strand at 284.465 kb on + strand at 284.465 kb on + strand at 284.470 kb on - strand at 284.473 kb on - strand at 284.473 kb on - strand at 284.475 kb on + strand at 284.478 kb on - strand at 284.488 kb on - strand at 284.595 kb on + strand, within CSW01_01440 at 284.617 kb on + strand, within CSW01_01440 at 284.625 kb on - strand, within CSW01_01440 at 284.625 kb on - strand, within CSW01_01440 at 284.734 kb on - strand, within CSW01_01440 at 284.747 kb on - strand, within CSW01_01440 at 284.752 kb on - strand, within CSW01_01440 at 284.863 kb on - strand, within CSW01_01440 at 284.878 kb on + strand, within CSW01_01440 at 284.891 kb on - strand, within CSW01_01440 at 284.891 kb on - strand, within CSW01_01440 at 284.891 kb on - strand, within CSW01_01440 at 284.896 kb on + strand, within CSW01_01440 at 284.896 kb on + strand, within CSW01_01440 at 284.896 kb on + strand, within CSW01_01440 at 284.898 kb on + strand, within CSW01_01440 at 284.904 kb on - strand, within CSW01_01440 at 284.904 kb on - strand, within CSW01_01440 at 284.904 kb on - strand, within CSW01_01440 at 284.904 kb on - strand, within CSW01_01440 at 284.904 kb on - strand, within CSW01_01440 at 284.904 kb on - strand, within CSW01_01440 at 284.942 kb on + strand, within CSW01_01440 at 284.959 kb on - strand, within CSW01_01440 at 284.959 kb on - strand, within CSW01_01440 at 284.961 kb on + strand, within CSW01_01440 at 284.964 kb on - strand, within CSW01_01440 at 284.966 kb on + strand, within CSW01_01440 at 284.966 kb on + strand, within CSW01_01440 at 284.969 kb on - strand, within CSW01_01440 at 284.971 kb on + strand, within CSW01_01440 at 284.974 kb on - strand, within CSW01_01440 at 284.974 kb on - strand, within CSW01_01440 at 284.974 kb on - strand, within CSW01_01440 at 284.974 kb on - strand, within CSW01_01440 at 284.981 kb on + strand, within CSW01_01440 at 285.082 kb on - strand, within CSW01_01440 at 285.088 kb on + strand, within CSW01_01440 at 285.137 kb on + strand, within CSW01_01440 at 285.137 kb on + strand, within CSW01_01440 at 285.145 kb on - strand, within CSW01_01440 at 285.172 kb on + strand, within CSW01_01440 at 285.172 kb on - strand, within CSW01_01440 at 285.179 kb on + strand, within CSW01_01440 at 285.182 kb on - strand, within CSW01_01440 at 285.187 kb on - strand, within CSW01_01440 at 285.200 kb on + strand, within CSW01_01440 at 285.200 kb on + strand, within CSW01_01440 at 285.213 kb on - strand, within CSW01_01440 at 285.234 kb on + strand, within CSW01_01440 at 285.237 kb on - strand, within CSW01_01440 at 285.237 kb on - strand, within CSW01_01440 at 285.247 kb on - strand, within CSW01_01440 at 285.282 kb on + strand, within CSW01_01440 at 285.336 kb on + strand, within CSW01_01440 at 285.395 kb on + strand, within CSW01_01440 at 285.434 kb on + strand, within CSW01_01440 at 285.442 kb on - strand, within CSW01_01440 at 285.486 kb on + strand, within CSW01_01440 at 285.486 kb on + strand, within CSW01_01440 at 285.486 kb on + strand, within CSW01_01440 at 285.494 kb on - strand, within CSW01_01440 at 285.494 kb on - strand, within CSW01_01440 at 285.494 kb on - strand, within CSW01_01440 at 285.508 kb on + strand, within CSW01_01440 at 285.511 kb on - strand, within CSW01_01440 at 285.511 kb on - strand, within CSW01_01440 at 285.511 kb on - strand, within CSW01_01440 at 285.546 kb on - strand, within CSW01_01440 at 285.550 kb on + strand, within CSW01_01440 at 285.579 kb on + strand, within CSW01_01440 at 285.579 kb on + strand, within CSW01_01440 at 285.587 kb on - strand, within CSW01_01440 at 285.602 kb on + strand at 285.605 kb on - strand at 285.609 kb on + strand at 285.609 kb on + strand at 285.609 kb on + strand at 285.610 kb on - strand at 285.611 kb on + strand at 285.611 kb on + strand at 285.611 kb on + strand at 285.617 kb on - strand at 285.617 kb on - strand at 285.617 kb on - strand at 285.619 kb on - strand at 285.619 kb on - strand at 285.619 kb on - strand at 285.619 kb on - strand at 285.619 kb on - strand at 285.619 kb on - strand at 285.623 kb on + strand at 285.628 kb on + strand at 285.704 kb on + strand at 285.712 kb on + strand at 285.723 kb on + strand at 285.731 kb on - strand at 285.731 kb on - strand at 285.731 kb on - strand at 285.731 kb on - strand at 285.781 kb on + strand at 285.802 kb on - strand at 285.808 kb on - strand at 285.862 kb on - strand at 285.862 kb on - strand at 285.869 kb on + strand at 285.877 kb on + strand at 285.967 kb on - strand at 286.016 kb on + strand at 286.022 kb on - strand at 286.026 kb on + strand at 286.026 kb on + strand at 286.026 kb on + strand at 286.026 kb on + strand at 286.026 kb on + strand at 286.034 kb on - strand at 286.034 kb on - strand at 286.034 kb on - strand at 286.034 kb on - strand at 286.034 kb on - strand at 286.034 kb on - strand at 286.034 kb on - strand at 286.081 kb on - strand, within CSW01_01445 at 286.081 kb on - strand, within CSW01_01445 at 286.154 kb on + strand, within CSW01_01445 at 286.159 kb on + strand, within CSW01_01445 at 286.159 kb on + strand, within CSW01_01445 at 286.162 kb on - strand, within CSW01_01445 at 286.167 kb on - strand, within CSW01_01445 at 286.167 kb on - strand, within CSW01_01445 at 286.199 kb on + strand, within CSW01_01445 at 286.207 kb on - strand, within CSW01_01445 at 286.215 kb on - strand, within CSW01_01445 at 286.254 kb on + strand, within CSW01_01445 at 286.254 kb on - strand, within CSW01_01445 at 286.262 kb on - strand, within CSW01_01445 at 286.262 kb on - strand, within CSW01_01445 at 286.264 kb on + strand, within CSW01_01445 at 286.265 kb on + strand, within CSW01_01445 at 286.273 kb on - strand, within CSW01_01445 at 286.273 kb on - strand, within CSW01_01445 at 286.307 kb on - strand, within CSW01_01445 at 286.353 kb on - strand, within CSW01_01445 at 286.411 kb on + strand, within CSW01_01445 at 286.419 kb on - strand, within CSW01_01445 at 286.467 kb on - strand, within CSW01_01445 at 286.481 kb on + strand, within CSW01_01445 at 286.499 kb on - strand, within CSW01_01445 at 286.510 kb on - strand, within CSW01_01445 at 286.531 kb on - strand, within CSW01_01445 at 286.535 kb on + strand, within CSW01_01445 at 286.535 kb on + strand, within CSW01_01445 at 286.540 kb on + strand, within CSW01_01445 at 286.540 kb on + strand, within CSW01_01445 at 286.545 kb on + strand, within CSW01_01445 at 286.548 kb on - strand, within CSW01_01445 at 286.548 kb on - strand, within CSW01_01445 at 286.553 kb on - strand, within CSW01_01445 at 286.577 kb on - strand, within CSW01_01445 at 286.641 kb on - strand, within CSW01_01445 at 286.680 kb on + strand, within CSW01_01445 at 286.688 kb on - strand, within CSW01_01445 at 286.711 kb on + strand, within CSW01_01445 at 286.713 kb on + strand, within CSW01_01445 at 286.713 kb on + strand, within CSW01_01445 at 286.713 kb on + strand, within CSW01_01445 at 286.721 kb on - strand, within CSW01_01445
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 283,411 - CSW01_01435 0.82 -0.2 283,413 + CSW01_01435 0.82 -2.0 283,413 + CSW01_01435 0.82 +0.8 283,464 + CSW01_01435 0.85 +0.7 283,464 + CSW01_01435 0.85 -3.7 283,472 - CSW01_01435 0.86 -0.4 283,472 - CSW01_01435 0.86 +1.2 283,472 - CSW01_01435 0.86 +0.3 283,496 - CSW01_01435 0.87 -0.5 283,529 - CSW01_01435 0.89 -0.6 283,529 - CSW01_01435 0.89 -0.0 283,541 + +1.3 283,547 + -1.7 283,549 - -1.3 283,560 - -2.4 283,676 - -1.3 283,695 - +1.6 283,759 - -1.7 283,791 + +0.4 283,803 + +0.2 283,803 + +0.5 283,803 + -2.5 283,803 + +0.1 283,803 + -3.2 283,803 + +0.2 283,803 + -4.5 283,803 + -3.3 283,803 + +0.4 283,803 + -4.0 283,803 + +0.7 283,803 + -0.5 283,803 + -1.4 283,803 + -2.1 283,803 + +1.1 283,803 + +0.0 283,803 + +1.7 283,803 + -0.7 283,803 + -0.2 283,803 + -2.5 283,811 - -4.4 283,811 - +0.3 283,811 - +0.2 283,811 - -0.6 283,811 - +0.6 283,811 - +0.4 283,811 - -1.5 283,811 - -3.2 283,811 - +0.3 283,811 - -1.9 283,811 - +1.0 283,811 - +0.7 283,811 - -2.3 283,811 - +0.6 283,811 - +0.3 283,811 - +1.6 283,811 - -2.7 283,811 - -2.7 283,811 - -2.9 283,811 - -1.4 283,811 - +0.8 283,824 + -3.9 283,870 + +2.1 284,080 - -2.7 284,080 - -3.5 284,080 - +0.2 284,089 + +1.4 284,100 - -0.6 284,216 + +1.6 284,281 + -0.3 284,281 + -0.4 284,281 + +1.0 284,281 + -3.5 284,289 - -1.9 284,304 + +0.2 284,336 + +1.4 284,342 - +1.0 284,434 + +1.3 284,465 + +0.3 284,465 + -2.2 284,470 - +1.9 284,473 - -2.9 284,473 - +0.5 284,475 + +1.5 284,478 - +3.0 284,488 - -0.7 284,595 + CSW01_01440 0.15 -4.3 284,617 + CSW01_01440 0.17 -0.8 284,625 - CSW01_01440 0.17 +0.8 284,625 - CSW01_01440 0.17 +2.3 284,734 - CSW01_01440 0.26 +0.1 284,747 - CSW01_01440 0.27 -2.3 284,752 - CSW01_01440 0.27 +1.6 284,863 - CSW01_01440 0.35 +0.5 284,878 + CSW01_01440 0.36 +0.8 284,891 - CSW01_01440 0.37 +0.8 284,891 - CSW01_01440 0.37 -0.0 284,891 - CSW01_01440 0.37 -0.2 284,896 + CSW01_01440 0.38 -3.5 284,896 + CSW01_01440 0.38 -0.7 284,896 + CSW01_01440 0.38 +1.4 284,898 + CSW01_01440 0.38 +2.3 284,904 - CSW01_01440 0.38 -0.6 284,904 - CSW01_01440 0.38 -4.6 284,904 - CSW01_01440 0.38 -3.6 284,904 - CSW01_01440 0.38 +1.0 284,904 - CSW01_01440 0.38 +0.4 284,904 - CSW01_01440 0.38 +0.4 284,942 + CSW01_01440 0.41 +0.8 284,959 - CSW01_01440 0.42 -0.6 284,959 - CSW01_01440 0.42 +1.1 284,961 + CSW01_01440 0.43 -0.1 284,964 - CSW01_01440 0.43 +0.1 284,966 + CSW01_01440 0.43 +1.1 284,966 + CSW01_01440 0.43 +0.6 284,969 - CSW01_01440 0.43 -0.7 284,971 + CSW01_01440 0.43 +0.6 284,974 - CSW01_01440 0.43 -0.4 284,974 - CSW01_01440 0.43 -1.8 284,974 - CSW01_01440 0.43 +1.6 284,974 - CSW01_01440 0.43 -0.6 284,981 + CSW01_01440 0.44 -0.9 285,082 - CSW01_01440 0.52 +2.8 285,088 + CSW01_01440 0.52 -2.9 285,137 + CSW01_01440 0.56 -0.4 285,137 + CSW01_01440 0.56 +1.1 285,145 - CSW01_01440 0.56 -1.7 285,172 + CSW01_01440 0.58 +1.6 285,172 - CSW01_01440 0.58 -0.8 285,179 + CSW01_01440 0.59 +0.6 285,182 - CSW01_01440 0.59 +0.6 285,187 - CSW01_01440 0.59 -1.4 285,200 + CSW01_01440 0.60 -3.9 285,200 + CSW01_01440 0.60 +1.2 285,213 - CSW01_01440 0.61 +1.0 285,234 + CSW01_01440 0.63 +0.7 285,237 - CSW01_01440 0.63 -1.2 285,237 - CSW01_01440 0.63 +1.6 285,247 - CSW01_01440 0.64 +0.4 285,282 + CSW01_01440 0.67 +0.7 285,336 + CSW01_01440 0.71 +0.1 285,395 + CSW01_01440 0.75 -2.4 285,434 + CSW01_01440 0.78 -0.7 285,442 - CSW01_01440 0.78 -1.2 285,486 + CSW01_01440 0.82 -0.4 285,486 + CSW01_01440 0.82 -0.5 285,486 + CSW01_01440 0.82 +0.5 285,494 - CSW01_01440 0.82 -0.9 285,494 - CSW01_01440 0.82 +1.1 285,494 - CSW01_01440 0.82 -2.1 285,508 + CSW01_01440 0.83 -1.5 285,511 - CSW01_01440 0.84 +1.0 285,511 - CSW01_01440 0.84 +1.7 285,511 - CSW01_01440 0.84 -3.0 285,546 - CSW01_01440 0.86 +1.4 285,550 + CSW01_01440 0.87 -3.4 285,579 + CSW01_01440 0.89 +0.1 285,579 + CSW01_01440 0.89 +0.5 285,587 - CSW01_01440 0.89 +0.7 285,602 + +0.2 285,605 - +0.7 285,609 + -4.0 285,609 + +0.7 285,609 + +1.5 285,610 - +0.4 285,611 + -3.5 285,611 + +0.3 285,611 + +0.5 285,617 - +0.1 285,617 - -0.9 285,617 - -2.1 285,619 - +1.1 285,619 - +0.9 285,619 - -3.2 285,619 - +1.0 285,619 - +0.2 285,619 - +0.3 285,623 + -2.6 285,628 + +0.5 285,704 + -3.7 285,712 + -1.7 285,723 + +0.4 285,731 - +2.0 285,731 - +1.1 285,731 - +2.0 285,731 - -4.2 285,781 + +0.1 285,802 - -1.0 285,808 - -0.2 285,862 - -1.5 285,862 - -0.8 285,869 + -1.9 285,877 + -1.9 285,967 - -0.6 286,016 + -1.1 286,022 - +0.2 286,026 + -2.7 286,026 + -0.0 286,026 + -2.3 286,026 + +0.6 286,026 + -0.3 286,034 - -1.9 286,034 - +0.6 286,034 - -3.3 286,034 - +0.7 286,034 - +1.9 286,034 - -0.6 286,034 - -1.9 286,081 - CSW01_01445 0.11 +1.1 286,081 - CSW01_01445 0.11 +0.0 286,154 + CSW01_01445 0.15 +0.8 286,159 + CSW01_01445 0.15 -3.8 286,159 + CSW01_01445 0.15 -3.1 286,162 - CSW01_01445 0.15 +0.9 286,167 - CSW01_01445 0.15 +0.7 286,167 - CSW01_01445 0.15 +1.3 286,199 + CSW01_01445 0.17 +0.5 286,207 - CSW01_01445 0.17 +1.8 286,215 - CSW01_01445 0.18 +0.5 286,254 + CSW01_01445 0.19 +0.2 286,254 - CSW01_01445 0.19 +0.4 286,262 - CSW01_01445 0.20 +0.6 286,262 - CSW01_01445 0.20 -1.2 286,264 + CSW01_01445 0.20 -3.1 286,265 + CSW01_01445 0.20 -4.0 286,273 - CSW01_01445 0.20 +1.5 286,273 - CSW01_01445 0.20 +2.0 286,307 - CSW01_01445 0.22 -1.4 286,353 - CSW01_01445 0.24 -1.2 286,411 + CSW01_01445 0.27 +0.7 286,419 - CSW01_01445 0.27 -0.8 286,467 - CSW01_01445 0.29 +0.4 286,481 + CSW01_01445 0.30 +1.1 286,499 - CSW01_01445 0.31 +0.2 286,510 - CSW01_01445 0.31 -0.5 286,531 - CSW01_01445 0.32 +0.4 286,535 + CSW01_01445 0.33 +0.9 286,535 + CSW01_01445 0.33 +2.0 286,540 + CSW01_01445 0.33 +0.1 286,540 + CSW01_01445 0.33 +1.3 286,545 + CSW01_01445 0.33 -0.1 286,548 - CSW01_01445 0.33 -0.3 286,548 - CSW01_01445 0.33 -2.8 286,553 - CSW01_01445 0.33 +0.6 286,577 - CSW01_01445 0.35 -0.1 286,641 - CSW01_01445 0.38 -0.2 286,680 + CSW01_01445 0.39 +0.2 286,688 - CSW01_01445 0.40 -0.4 286,711 + CSW01_01445 0.41 +0.3 286,713 + CSW01_01445 0.41 +0.6 286,713 + CSW01_01445 0.41 +0.5 286,713 + CSW01_01445 0.41 +0.5 286,721 - CSW01_01445 0.41 -1.5
Or see this region's nucleotide sequence