Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01370

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01365 and CSW01_01370 are separated by 261 nucleotidesCSW01_01370 and CSW01_01375 are separated by 54 nucleotidesCSW01_01375 and CSW01_01380 overlap by 1 nucleotides CSW01_01365: CSW01_01365 - MBL fold hydrolase, at 267,808 to 269,175 _01365 CSW01_01370: CSW01_01370 - mechanosensitive ion channel family protein, at 269,437 to 270,675 _01370 CSW01_01375: CSW01_01375 - IclR family transcriptional regulator, at 270,730 to 271,302 _01375 CSW01_01380: CSW01_01380 - D-2-hydroxyacid dehydrogenase, at 271,302 to 272,225 _01380 Position (kb) 269 270 271Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 268.455 kb on + strand, within CSW01_01365at 268.455 kb on + strand, within CSW01_01365at 268.460 kb on + strand, within CSW01_01365at 268.460 kb on + strand, within CSW01_01365at 268.462 kb on + strand, within CSW01_01365at 268.462 kb on + strand, within CSW01_01365at 268.462 kb on + strand, within CSW01_01365at 268.465 kb on + strand, within CSW01_01365at 268.465 kb on + strand, within CSW01_01365at 268.465 kb on + strand, within CSW01_01365at 268.468 kb on - strand, within CSW01_01365at 268.468 kb on - strand, within CSW01_01365at 268.472 kb on + strand, within CSW01_01365at 268.478 kb on - strand, within CSW01_01365at 268.478 kb on - strand, within CSW01_01365at 268.480 kb on - strand, within CSW01_01365at 268.480 kb on - strand, within CSW01_01365at 268.480 kb on - strand, within CSW01_01365at 268.480 kb on - strand, within CSW01_01365at 268.572 kb on + strand, within CSW01_01365at 268.577 kb on + strand, within CSW01_01365at 268.577 kb on + strand, within CSW01_01365at 268.590 kb on + strand, within CSW01_01365at 268.673 kb on + strand, within CSW01_01365at 268.705 kb on + strand, within CSW01_01365at 268.744 kb on - strand, within CSW01_01365at 268.746 kb on + strand, within CSW01_01365at 268.746 kb on + strand, within CSW01_01365at 268.746 kb on + strand, within CSW01_01365at 268.746 kb on + strand, within CSW01_01365at 268.748 kb on + strand, within CSW01_01365at 268.748 kb on + strand, within CSW01_01365at 268.754 kb on - strand, within CSW01_01365at 268.754 kb on - strand, within CSW01_01365at 268.754 kb on - strand, within CSW01_01365at 268.754 kb on - strand, within CSW01_01365at 268.754 kb on - strand, within CSW01_01365at 268.754 kb on - strand, within CSW01_01365at 268.756 kb on - strand, within CSW01_01365at 268.756 kb on - strand, within CSW01_01365at 268.793 kb on + strand, within CSW01_01365at 268.798 kb on + strand, within CSW01_01365at 268.842 kb on + strand, within CSW01_01365at 268.898 kb on - strand, within CSW01_01365at 268.925 kb on - strand, within CSW01_01365at 268.936 kb on + strand, within CSW01_01365at 268.944 kb on - strand, within CSW01_01365at 268.946 kb on + strand, within CSW01_01365at 268.956 kb on - strand, within CSW01_01365at 268.956 kb on - strand, within CSW01_01365at 268.973 kb on + strand, within CSW01_01365at 268.973 kb on + strand, within CSW01_01365at 268.973 kb on + strand, within CSW01_01365at 268.973 kb on + strand, within CSW01_01365at 269.098 kb on + strandat 269.106 kb on - strandat 269.111 kb on + strandat 269.138 kb on + strandat 269.176 kb on + strandat 269.191 kb on - strandat 269.215 kb on - strandat 269.219 kb on + strandat 269.249 kb on - strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.330 kb on + strandat 269.334 kb on - strandat 269.336 kb on - strandat 269.375 kb on + strandat 269.398 kb on - strandat 269.410 kb on - strandat 269.433 kb on + strandat 269.435 kb on + strandat 269.435 kb on + strandat 269.440 kb on + strandat 269.441 kb on - strandat 269.441 kb on - strandat 269.448 kb on - strandat 269.490 kb on + strandat 269.490 kb on + strandat 269.490 kb on + strandat 269.490 kb on + strandat 269.498 kb on - strandat 269.498 kb on - strandat 269.498 kb on - strandat 269.498 kb on - strandat 269.498 kb on - strandat 269.498 kb on - strandat 269.543 kb on + strandat 269.553 kb on - strandat 269.579 kb on + strand, within CSW01_01370at 269.581 kb on + strand, within CSW01_01370at 269.653 kb on + strand, within CSW01_01370at 269.781 kb on - strand, within CSW01_01370at 269.833 kb on + strand, within CSW01_01370at 269.841 kb on - strand, within CSW01_01370at 269.881 kb on + strand, within CSW01_01370at 269.915 kb on - strand, within CSW01_01370at 269.983 kb on + strand, within CSW01_01370at 269.983 kb on + strand, within CSW01_01370at 270.001 kb on + strand, within CSW01_01370at 270.014 kb on - strand, within CSW01_01370at 270.058 kb on + strand, within CSW01_01370at 270.164 kb on - strand, within CSW01_01370at 270.172 kb on - strand, within CSW01_01370at 270.240 kb on + strand, within CSW01_01370at 270.248 kb on - strand, within CSW01_01370at 270.248 kb on - strand, within CSW01_01370at 270.288 kb on + strand, within CSW01_01370at 270.298 kb on + strand, within CSW01_01370at 270.298 kb on + strand, within CSW01_01370at 270.324 kb on - strand, within CSW01_01370at 270.365 kb on + strand, within CSW01_01370at 270.366 kb on + strand, within CSW01_01370at 270.366 kb on + strand, within CSW01_01370at 270.366 kb on + strand, within CSW01_01370at 270.366 kb on + strand, within CSW01_01370at 270.367 kb on + strand, within CSW01_01370at 270.367 kb on + strand, within CSW01_01370at 270.367 kb on + strand, within CSW01_01370at 270.373 kb on + strand, within CSW01_01370at 270.374 kb on - strand, within CSW01_01370at 270.374 kb on - strand, within CSW01_01370at 270.374 kb on - strand, within CSW01_01370at 270.374 kb on - strand, within CSW01_01370at 270.374 kb on - strand, within CSW01_01370at 270.376 kb on + strand, within CSW01_01370at 270.376 kb on + strand, within CSW01_01370at 270.384 kb on - strand, within CSW01_01370at 270.384 kb on - strand, within CSW01_01370at 270.384 kb on - strand, within CSW01_01370at 270.398 kb on + strand, within CSW01_01370at 270.407 kb on - strand, within CSW01_01370at 270.451 kb on - strand, within CSW01_01370at 270.451 kb on - strand, within CSW01_01370at 270.479 kb on + strand, within CSW01_01370at 270.487 kb on - strand, within CSW01_01370at 270.487 kb on - strand, within CSW01_01370at 270.505 kb on + strand, within CSW01_01370at 270.538 kb on + strand, within CSW01_01370at 270.538 kb on + strand, within CSW01_01370at 270.546 kb on - strand, within CSW01_01370at 270.546 kb on - strand, within CSW01_01370at 270.554 kb on - strandat 270.554 kb on - strandat 270.615 kb on + strandat 270.652 kb on + strandat 270.652 kb on + strandat 270.657 kb on + strandat 270.666 kb on - strandat 270.677 kb on + strandat 270.677 kb on + strandat 270.717 kb on + strandat 270.717 kb on + strandat 270.738 kb on + strandat 270.756 kb on + strandat 270.775 kb on + strandat 270.785 kb on + strandat 270.804 kb on + strand, within CSW01_01375at 270.811 kb on + strand, within CSW01_01375at 270.820 kb on - strand, within CSW01_01375at 270.838 kb on + strand, within CSW01_01375at 270.844 kb on + strand, within CSW01_01375at 270.844 kb on + strand, within CSW01_01375at 270.859 kb on + strand, within CSW01_01375at 270.868 kb on + strand, within CSW01_01375at 270.883 kb on + strand, within CSW01_01375at 270.903 kb on - strand, within CSW01_01375at 270.919 kb on - strand, within CSW01_01375at 270.940 kb on - strand, within CSW01_01375at 270.966 kb on + strand, within CSW01_01375at 270.985 kb on + strand, within CSW01_01375at 270.993 kb on - strand, within CSW01_01375at 270.998 kb on - strand, within CSW01_01375at 270.998 kb on - strand, within CSW01_01375at 271.000 kb on + strand, within CSW01_01375at 271.008 kb on - strand, within CSW01_01375at 271.059 kb on + strand, within CSW01_01375at 271.084 kb on + strand, within CSW01_01375at 271.092 kb on - strand, within CSW01_01375at 271.149 kb on + strand, within CSW01_01375at 271.149 kb on + strand, within CSW01_01375at 271.149 kb on + strand, within CSW01_01375at 271.157 kb on - strand, within CSW01_01375at 271.157 kb on - strand, within CSW01_01375at 271.187 kb on - strand, within CSW01_01375at 271.200 kb on - strand, within CSW01_01375at 271.245 kb on + strandat 271.250 kb on - strandat 271.261 kb on - strandat 271.262 kb on + strandat 271.263 kb on - strandat 271.265 kb on + strandat 271.270 kb on - strandat 271.271 kb on - strandat 271.273 kb on - strandat 271.328 kb on + strandat 271.409 kb on - strand, within CSW01_01380at 271.421 kb on + strand, within CSW01_01380at 271.429 kb on - strand, within CSW01_01380at 271.443 kb on + strand, within CSW01_01380at 271.461 kb on - strand, within CSW01_01380at 271.506 kb on + strand, within CSW01_01380at 271.536 kb on + strand, within CSW01_01380at 271.544 kb on - strand, within CSW01_01380at 271.567 kb on + strand, within CSW01_01380at 271.567 kb on + strand, within CSW01_01380at 271.575 kb on - strand, within CSW01_01380at 271.622 kb on - strand, within CSW01_01380at 271.636 kb on + strand, within CSW01_01380at 271.636 kb on + strand, within CSW01_01380at 271.636 kb on + strand, within CSW01_01380at 271.636 kb on + strand, within CSW01_01380at 271.636 kb on + strand, within CSW01_01380at 271.644 kb on - strand, within CSW01_01380at 271.644 kb on - strand, within CSW01_01380at 271.644 kb on - strand, within CSW01_01380

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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268,455 + CSW01_01365 0.47 +0.6
268,455 + CSW01_01365 0.47 +2.1
268,460 + CSW01_01365 0.48 -0.0
268,460 + CSW01_01365 0.48 -3.0
268,462 + CSW01_01365 0.48 -3.3
268,462 + CSW01_01365 0.48 +1.1
268,462 + CSW01_01365 0.48 -2.4
268,465 + CSW01_01365 0.48 +1.0
268,465 + CSW01_01365 0.48 +0.6
268,465 + CSW01_01365 0.48 -4.9
268,468 - CSW01_01365 0.48 -0.7
268,468 - CSW01_01365 0.48 -0.0
268,472 + CSW01_01365 0.49 -1.2
268,478 - CSW01_01365 0.49 -0.4
268,478 - CSW01_01365 0.49 -1.0
268,480 - CSW01_01365 0.49 +0.7
268,480 - CSW01_01365 0.49 -3.4
268,480 - CSW01_01365 0.49 +0.1
268,480 - CSW01_01365 0.49 -1.4
268,572 + CSW01_01365 0.56 +0.7
268,577 + CSW01_01365 0.56 -2.7
268,577 + CSW01_01365 0.56 -0.1
268,590 + CSW01_01365 0.57 +0.7
268,673 + CSW01_01365 0.63 -0.4
268,705 + CSW01_01365 0.66 -2.2
268,744 - CSW01_01365 0.68 +0.2
268,746 + CSW01_01365 0.69 -2.5
268,746 + CSW01_01365 0.69 +0.6
268,746 + CSW01_01365 0.69 +1.6
268,746 + CSW01_01365 0.69 +0.7
268,748 + CSW01_01365 0.69 +0.1
268,748 + CSW01_01365 0.69 +0.3
268,754 - CSW01_01365 0.69 +1.0
268,754 - CSW01_01365 0.69 +0.9
268,754 - CSW01_01365 0.69 -3.8
268,754 - CSW01_01365 0.69 -3.3
268,754 - CSW01_01365 0.69 +0.2
268,754 - CSW01_01365 0.69 +0.7
268,756 - CSW01_01365 0.69 -0.6
268,756 - CSW01_01365 0.69 +1.4
268,793 + CSW01_01365 0.72 -2.8
268,798 + CSW01_01365 0.72 -2.8
268,842 + CSW01_01365 0.76 +1.2
268,898 - CSW01_01365 0.80 +0.8
268,925 - CSW01_01365 0.82 -0.0
268,936 + CSW01_01365 0.82 -3.1
268,944 - CSW01_01365 0.83 -0.5
268,946 + CSW01_01365 0.83 +0.5
268,956 - CSW01_01365 0.84 +0.7
268,956 - CSW01_01365 0.84 -0.9
268,973 + CSW01_01365 0.85 +0.4
268,973 + CSW01_01365 0.85 -1.5
268,973 + CSW01_01365 0.85 -2.1
268,973 + CSW01_01365 0.85 -0.6
269,098 + -2.1
269,106 - -3.5
269,111 + -1.4
269,138 + +0.7
269,176 + +0.5
269,191 - -0.1
269,215 - -2.1
269,219 + +1.6
269,249 - -2.5
269,297 + +2.1
269,297 + -0.8
269,297 + +1.9
269,297 + +0.1
269,297 + +0.2
269,297 + +0.4
269,297 + +0.2
269,297 + -0.5
269,305 - +1.1
269,305 - -3.2
269,305 - -0.4
269,305 - -4.2
269,305 - -2.9
269,305 - -1.0
269,305 - -0.4
269,305 - +1.2
269,330 + -1.8
269,334 - +0.7
269,336 - +0.8
269,375 + -1.6
269,398 - +1.1
269,410 - +0.2
269,433 + -2.0
269,435 + -0.1
269,435 + +0.2
269,440 + +1.1
269,441 - +0.7
269,441 - -0.4
269,448 - -0.3
269,490 + -1.7
269,490 + +0.8
269,490 + +1.6
269,490 + -2.3
269,498 - -3.1
269,498 - +1.3
269,498 - +1.0
269,498 - -4.1
269,498 - +0.9
269,498 - -0.6
269,543 + -2.8
269,553 - +0.3
269,579 + CSW01_01370 0.11 -1.0
269,581 + CSW01_01370 0.12 -0.2
269,653 + CSW01_01370 0.17 +1.0
269,781 - CSW01_01370 0.28 +1.0
269,833 + CSW01_01370 0.32 +1.5
269,841 - CSW01_01370 0.33 -0.5
269,881 + CSW01_01370 0.36 +1.0
269,915 - CSW01_01370 0.39 +1.1
269,983 + CSW01_01370 0.44 +1.6
269,983 + CSW01_01370 0.44 +0.5
270,001 + CSW01_01370 0.46 +0.3
270,014 - CSW01_01370 0.47 +0.8
270,058 + CSW01_01370 0.50 -1.2
270,164 - CSW01_01370 0.59 +0.6
270,172 - CSW01_01370 0.59 +0.6
270,240 + CSW01_01370 0.65 +0.3
270,248 - CSW01_01370 0.65 -0.1
270,248 - CSW01_01370 0.65 +0.7
270,288 + CSW01_01370 0.69 +1.1
270,298 + CSW01_01370 0.69 -2.9
270,298 + CSW01_01370 0.69 -1.6
270,324 - CSW01_01370 0.72 +0.8
270,365 + CSW01_01370 0.75 +0.4
270,366 + CSW01_01370 0.75 +1.0
270,366 + CSW01_01370 0.75 +3.2
270,366 + CSW01_01370 0.75 +0.7
270,366 + CSW01_01370 0.75 +1.5
270,367 + CSW01_01370 0.75 -4.4
270,367 + CSW01_01370 0.75 -0.1
270,367 + CSW01_01370 0.75 +0.9
270,373 + CSW01_01370 0.76 +0.2
270,374 - CSW01_01370 0.76 +0.7
270,374 - CSW01_01370 0.76 +0.0
270,374 - CSW01_01370 0.76 -0.4
270,374 - CSW01_01370 0.76 -3.7
270,374 - CSW01_01370 0.76 +0.5
270,376 + CSW01_01370 0.76 -1.9
270,376 + CSW01_01370 0.76 +2.2
270,384 - CSW01_01370 0.76 +2.4
270,384 - CSW01_01370 0.76 -1.3
270,384 - CSW01_01370 0.76 -3.7
270,398 + CSW01_01370 0.78 -3.9
270,407 - CSW01_01370 0.78 +0.7
270,451 - CSW01_01370 0.82 +0.7
270,451 - CSW01_01370 0.82 +1.5
270,479 + CSW01_01370 0.84 -1.5
270,487 - CSW01_01370 0.85 +0.2
270,487 - CSW01_01370 0.85 -0.2
270,505 + CSW01_01370 0.86 +0.2
270,538 + CSW01_01370 0.89 +1.4
270,538 + CSW01_01370 0.89 -0.4
270,546 - CSW01_01370 0.90 +0.3
270,546 - CSW01_01370 0.90 -2.6
270,554 - -3.2
270,554 - -2.2
270,615 + -1.7
270,652 + -2.1
270,652 + +0.8
270,657 + +0.2
270,666 - -0.1
270,677 + +0.9
270,677 + -0.1
270,717 + +1.1
270,717 + +1.1
270,738 + +0.7
270,756 + -1.4
270,775 + +0.5
270,785 + -4.6
270,804 + CSW01_01375 0.13 +0.1
270,811 + CSW01_01375 0.14 -4.0
270,820 - CSW01_01375 0.16 -0.5
270,838 + CSW01_01375 0.19 -3.1
270,844 + CSW01_01375 0.20 -1.6
270,844 + CSW01_01375 0.20 +0.8
270,859 + CSW01_01375 0.23 +0.1
270,868 + CSW01_01375 0.24 -0.2
270,883 + CSW01_01375 0.27 -1.3
270,903 - CSW01_01375 0.30 +0.5
270,919 - CSW01_01375 0.33 +2.4
270,940 - CSW01_01375 0.37 -0.9
270,966 + CSW01_01375 0.41 +2.5
270,985 + CSW01_01375 0.45 -0.0
270,993 - CSW01_01375 0.46 +0.4
270,998 - CSW01_01375 0.47 +0.3
270,998 - CSW01_01375 0.47 -1.6
271,000 + CSW01_01375 0.47 +0.2
271,008 - CSW01_01375 0.49 +1.0
271,059 + CSW01_01375 0.57 +1.3
271,084 + CSW01_01375 0.62 -2.3
271,092 - CSW01_01375 0.63 +1.1
271,149 + CSW01_01375 0.73 +1.1
271,149 + CSW01_01375 0.73 +0.3
271,149 + CSW01_01375 0.73 +0.1
271,157 - CSW01_01375 0.75 +1.7
271,157 - CSW01_01375 0.75 +1.9
271,187 - CSW01_01375 0.80 -3.3
271,200 - CSW01_01375 0.82 -0.8
271,245 + -3.1
271,250 - +1.8
271,261 - -0.1
271,262 + +1.3
271,263 - -1.8
271,265 + +1.1
271,270 - -0.5
271,271 - -3.1
271,273 - +1.0
271,328 + -0.4
271,409 - CSW01_01380 0.12 -1.6
271,421 + CSW01_01380 0.13 +1.9
271,429 - CSW01_01380 0.14 -0.5
271,443 + CSW01_01380 0.15 -2.9
271,461 - CSW01_01380 0.17 +0.8
271,506 + CSW01_01380 0.22 +1.1
271,536 + CSW01_01380 0.25 -2.2
271,544 - CSW01_01380 0.26 -2.1
271,567 + CSW01_01380 0.29 -1.9
271,567 + CSW01_01380 0.29 +0.4
271,575 - CSW01_01380 0.30 +2.4
271,622 - CSW01_01380 0.35 +0.7
271,636 + CSW01_01380 0.36 +0.7
271,636 + CSW01_01380 0.36 -0.5
271,636 + CSW01_01380 0.36 +1.5
271,636 + CSW01_01380 0.36 -3.2
271,636 + CSW01_01380 0.36 -2.1
271,644 - CSW01_01380 0.37 -2.9
271,644 - CSW01_01380 0.37 -0.5
271,644 - CSW01_01380 0.37 -0.3

Or see this region's nucleotide sequence