Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01320 and CSW01_01325 are separated by 69 nucleotides CSW01_01325 and CSW01_01330 are separated by 99 nucleotides CSW01_01330 and CSW01_01335 are separated by 147 nucleotides
CSW01_01320: CSW01_01320 - acyl-CoA reductase, at 257,293 to 259,770
_01320
CSW01_01325: CSW01_01325 - acetyltransferase, at 259,840 to 260,406
_01325
CSW01_01330: CSW01_01330 - oxidoreductase, at 260,506 to 260,646
_01330
CSW01_01335: CSW01_01335 - ISAs1 family transposase, at 260,794 to 261,921
_01335
Position (kb) 260
261 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 259.572 kb on - strand at 259.582 kb on - strand at 259.658 kb on - strand at 259.658 kb on - strand at 259.658 kb on - strand at 259.670 kb on + strand at 259.670 kb on + strand at 259.723 kb on - strand at 259.736 kb on - strand at 259.736 kb on - strand at 259.751 kb on + strand at 259.763 kb on - strand at 259.771 kb on + strand at 259.772 kb on - strand at 259.870 kb on - strand at 259.926 kb on + strand, within CSW01_01325 at 259.968 kb on + strand, within CSW01_01325 at 260.037 kb on - strand, within CSW01_01325 at 260.045 kb on - strand, within CSW01_01325 at 260.450 kb on - strand at 260.623 kb on + strand, within CSW01_01330 at 260.629 kb on + strand, within CSW01_01330 at 260.662 kb on - strand at 260.702 kb on + strand at 260.765 kb on - strand at 260.868 kb on - strand at 260.897 kb on + strand at 260.922 kb on - strand, within CSW01_01335 at 260.985 kb on + strand, within CSW01_01335 at 260.985 kb on + strand, within CSW01_01335 at 260.985 kb on + strand, within CSW01_01335 at 261.086 kb on + strand, within CSW01_01335 at 261.086 kb on + strand, within CSW01_01335 at 261.086 kb on + strand, within CSW01_01335 at 261.086 kb on + strand, within CSW01_01335 at 261.086 kb on + strand, within CSW01_01335 at 261.094 kb on - strand, within CSW01_01335 at 261.094 kb on - strand, within CSW01_01335 at 261.148 kb on - strand, within CSW01_01335 at 261.151 kb on - strand, within CSW01_01335 at 261.196 kb on - strand, within CSW01_01335 at 261.286 kb on + strand, within CSW01_01335 at 261.286 kb on + strand, within CSW01_01335 at 261.294 kb on - strand, within CSW01_01335 at 261.393 kb on + strand, within CSW01_01335 at 261.617 kb on - strand, within CSW01_01335
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 259,572 - +5.1 259,582 - +4.9 259,658 - +4.7 259,658 - +4.8 259,658 - +5.7 259,670 + +4.8 259,670 + +4.6 259,723 - +5.7 259,736 - +4.8 259,736 - +4.9 259,751 + +4.7 259,763 - +5.2 259,771 + +1.5 259,772 - +5.0 259,870 - +5.5 259,926 + CSW01_01325 0.15 +5.5 259,968 + CSW01_01325 0.23 +5.0 260,037 - CSW01_01325 0.35 +6.5 260,045 - CSW01_01325 0.36 +4.7 260,450 - +0.8 260,623 + CSW01_01330 0.83 -1.2 260,629 + CSW01_01330 0.87 -0.6 260,662 - -3.1 260,702 + -3.7 260,765 - +2.0 260,868 - +0.3 260,897 + -3.3 260,922 - CSW01_01335 0.11 +0.5 260,985 + CSW01_01335 0.17 -0.0 260,985 + CSW01_01335 0.17 -0.7 260,985 + CSW01_01335 0.17 +0.9 261,086 + CSW01_01335 0.26 +0.6 261,086 + CSW01_01335 0.26 -1.2 261,086 + CSW01_01335 0.26 -1.2 261,086 + CSW01_01335 0.26 -0.5 261,086 + CSW01_01335 0.26 +1.5 261,094 - CSW01_01335 0.27 +0.4 261,094 - CSW01_01335 0.27 -0.4 261,148 - CSW01_01335 0.31 +0.3 261,151 - CSW01_01335 0.32 -2.8 261,196 - CSW01_01335 0.36 -2.2 261,286 + CSW01_01335 0.44 +0.6 261,286 + CSW01_01335 0.44 -0.8 261,294 - CSW01_01335 0.44 -3.4 261,393 + CSW01_01335 0.53 -0.1 261,617 - CSW01_01335 0.73 +1.1
Or see this region's nucleotide sequence