Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01195 and CSW01_01200 are separated by 79 nucleotides CSW01_01200 and CSW01_01205 are separated by 3 nucleotides CSW01_01205 and CSW01_01210 are separated by 3 nucleotides
CSW01_01195: CSW01_01195 - ADP-heptose--LPS heptosyltransferase I, at 230,798 to 231,871
_01195
CSW01_01200: CSW01_01200 - 3-deoxy-D-manno-octulosonic acid kinase, at 231,951 to 232,706
_01200
CSW01_01205: CSW01_01205 - wavE lipopolysaccharide synthesis family protein, at 232,710 to 233,669
_01205
CSW01_01210: CSW01_01210 - LPS biosynthesis protein WavE, at 233,673 to 234,602
_01210
Position (kb) 231
232
233 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 230.997 kb on + strand, within CSW01_01195 at 230.997 kb on + strand, within CSW01_01195 at 231.005 kb on - strand, within CSW01_01195 at 231.009 kb on + strand, within CSW01_01195 at 231.009 kb on + strand, within CSW01_01195 at 231.009 kb on + strand, within CSW01_01195 at 231.017 kb on - strand, within CSW01_01195 at 231.017 kb on - strand, within CSW01_01195 at 231.017 kb on - strand, within CSW01_01195 at 231.149 kb on + strand, within CSW01_01195 at 231.149 kb on + strand, within CSW01_01195 at 231.265 kb on + strand, within CSW01_01195 at 231.275 kb on + strand, within CSW01_01195 at 231.283 kb on - strand, within CSW01_01195 at 231.283 kb on - strand, within CSW01_01195 at 231.285 kb on + strand, within CSW01_01195 at 231.293 kb on - strand, within CSW01_01195 at 231.301 kb on - strand, within CSW01_01195 at 231.327 kb on + strand, within CSW01_01195 at 231.383 kb on + strand, within CSW01_01195 at 231.428 kb on - strand, within CSW01_01195 at 231.710 kb on - strand, within CSW01_01195 at 231.836 kb on - strand at 231.847 kb on - strand at 231.847 kb on - strand at 231.847 kb on - strand at 231.847 kb on - strand at 231.847 kb on - strand at 231.847 kb on - strand at 231.849 kb on + strand at 231.857 kb on - strand at 231.857 kb on - strand at 231.857 kb on - strand at 231.857 kb on - strand at 231.857 kb on - strand at 231.866 kb on + strand at 231.874 kb on - strand at 231.874 kb on - strand at 231.874 kb on - strand at 231.892 kb on + strand at 231.906 kb on + strand at 231.911 kb on + strand at 231.919 kb on - strand at 231.964 kb on + strand at 232.648 kb on + strand at 232.660 kb on + strand at 232.660 kb on + strand at 232.724 kb on + strand at 232.738 kb on + strand at 232.746 kb on + strand at 232.746 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.749 kb on + strand at 232.755 kb on + strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.757 kb on + strand at 232.765 kb on - strand at 232.766 kb on + strand at 232.766 kb on + strand at 232.766 kb on + strand at 232.766 kb on + strand at 232.766 kb on + strand at 232.766 kb on + strand at 232.766 kb on + strand at 232.766 kb on + strand at 232.766 kb on + strand at 232.766 kb on - strand at 232.771 kb on + strand at 232.771 kb on + strand at 232.774 kb on + strand at 232.774 kb on - strand at 232.774 kb on - strand at 232.774 kb on - strand at 232.774 kb on - strand at 232.774 kb on - strand at 232.779 kb on - strand at 232.779 kb on - strand at 232.923 kb on + strand, within CSW01_01205 at 232.968 kb on + strand, within CSW01_01205 at 232.968 kb on + strand, within CSW01_01205 at 232.968 kb on + strand, within CSW01_01205 at 232.968 kb on + strand, within CSW01_01205 at 232.968 kb on + strand, within CSW01_01205 at 232.976 kb on - strand, within CSW01_01205 at 232.976 kb on - strand, within CSW01_01205 at 232.976 kb on - strand, within CSW01_01205 at 232.976 kb on - strand, within CSW01_01205 at 232.976 kb on - strand, within CSW01_01205 at 233.011 kb on - strand, within CSW01_01205 at 233.074 kb on - strand, within CSW01_01205 at 233.075 kb on + strand, within CSW01_01205 at 233.075 kb on + strand, within CSW01_01205 at 233.075 kb on + strand, within CSW01_01205 at 233.075 kb on + strand, within CSW01_01205 at 233.075 kb on + strand, within CSW01_01205 at 233.075 kb on + strand, within CSW01_01205 at 233.075 kb on + strand, within CSW01_01205 at 233.083 kb on - strand, within CSW01_01205 at 233.083 kb on - strand, within CSW01_01205 at 233.083 kb on - strand, within CSW01_01205 at 233.085 kb on + strand, within CSW01_01205 at 233.085 kb on + strand, within CSW01_01205 at 233.085 kb on - strand, within CSW01_01205 at 233.088 kb on - strand, within CSW01_01205 at 233.093 kb on + strand, within CSW01_01205 at 233.093 kb on - strand, within CSW01_01205 at 233.093 kb on - strand, within CSW01_01205 at 233.093 kb on - strand, within CSW01_01205 at 233.093 kb on - strand, within CSW01_01205 at 233.098 kb on + strand, within CSW01_01205 at 233.135 kb on - strand, within CSW01_01205 at 233.137 kb on - strand, within CSW01_01205 at 233.137 kb on - strand, within CSW01_01205 at 233.139 kb on + strand, within CSW01_01205 at 233.139 kb on + strand, within CSW01_01205 at 233.139 kb on + strand, within CSW01_01205 at 233.144 kb on + strand, within CSW01_01205 at 233.144 kb on + strand, within CSW01_01205 at 233.146 kb on + strand, within CSW01_01205 at 233.147 kb on - strand, within CSW01_01205 at 233.147 kb on - strand, within CSW01_01205 at 233.147 kb on - strand, within CSW01_01205 at 233.148 kb on - strand, within CSW01_01205 at 233.148 kb on - strand, within CSW01_01205 at 233.152 kb on - strand, within CSW01_01205 at 233.154 kb on - strand, within CSW01_01205 at 233.176 kb on + strand, within CSW01_01205 at 233.186 kb on + strand, within CSW01_01205 at 233.186 kb on + strand, within CSW01_01205 at 233.186 kb on + strand, within CSW01_01205 at 233.186 kb on + strand, within CSW01_01205 at 233.186 kb on + strand, within CSW01_01205 at 233.186 kb on + strand, within CSW01_01205 at 233.194 kb on - strand, within CSW01_01205 at 233.194 kb on - strand, within CSW01_01205 at 233.194 kb on - strand, within CSW01_01205 at 233.194 kb on - strand, within CSW01_01205 at 233.194 kb on - strand, within CSW01_01205 at 233.195 kb on - strand, within CSW01_01205 at 233.195 kb on - strand, within CSW01_01205 at 233.195 kb on - strand, within CSW01_01205 at 233.201 kb on - strand, within CSW01_01205 at 233.225 kb on - strand, within CSW01_01205 at 233.225 kb on - strand, within CSW01_01205 at 233.242 kb on + strand, within CSW01_01205 at 233.242 kb on + strand, within CSW01_01205 at 233.247 kb on + strand, within CSW01_01205 at 233.255 kb on - strand, within CSW01_01205 at 233.257 kb on + strand, within CSW01_01205 at 233.257 kb on + strand, within CSW01_01205 at 233.257 kb on + strand, within CSW01_01205 at 233.257 kb on + strand, within CSW01_01205 at 233.257 kb on + strand, within CSW01_01205 at 233.265 kb on - strand, within CSW01_01205 at 233.265 kb on - strand, within CSW01_01205 at 233.265 kb on - strand, within CSW01_01205 at 233.265 kb on - strand, within CSW01_01205 at 233.267 kb on + strand, within CSW01_01205 at 233.275 kb on - strand, within CSW01_01205 at 233.290 kb on + strand, within CSW01_01205 at 233.290 kb on + strand, within CSW01_01205 at 233.290 kb on + strand, within CSW01_01205 at 233.290 kb on + strand, within CSW01_01205 at 233.290 kb on + strand, within CSW01_01205 at 233.290 kb on + strand, within CSW01_01205 at 233.298 kb on - strand, within CSW01_01205 at 233.298 kb on - strand, within CSW01_01205 at 233.428 kb on + strand, within CSW01_01205 at 233.428 kb on + strand, within CSW01_01205 at 233.430 kb on + strand, within CSW01_01205 at 233.430 kb on + strand, within CSW01_01205 at 233.430 kb on + strand, within CSW01_01205 at 233.436 kb on - strand, within CSW01_01205 at 233.439 kb on + strand, within CSW01_01205 at 233.439 kb on + strand, within CSW01_01205 at 233.439 kb on + strand, within CSW01_01205 at 233.439 kb on + strand, within CSW01_01205 at 233.439 kb on + strand, within CSW01_01205 at 233.439 kb on + strand, within CSW01_01205 at 233.440 kb on + strand, within CSW01_01205 at 233.440 kb on + strand, within CSW01_01205 at 233.440 kb on + strand, within CSW01_01205 at 233.440 kb on + strand, within CSW01_01205 at 233.440 kb on + strand, within CSW01_01205 at 233.447 kb on - strand, within CSW01_01205 at 233.447 kb on - strand, within CSW01_01205 at 233.451 kb on + strand, within CSW01_01205 at 233.458 kb on - strand, within CSW01_01205 at 233.459 kb on - strand, within CSW01_01205 at 233.477 kb on - strand, within CSW01_01205 at 233.482 kb on - strand, within CSW01_01205 at 233.506 kb on + strand, within CSW01_01205 at 233.514 kb on - strand, within CSW01_01205 at 233.553 kb on + strand, within CSW01_01205
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 230,997 + CSW01_01195 0.19 +3.3 230,997 + CSW01_01195 0.19 +3.1 231,005 - CSW01_01195 0.19 +0.9 231,009 + CSW01_01195 0.20 -0.5 231,009 + CSW01_01195 0.20 -1.6 231,009 + CSW01_01195 0.20 -2.1 231,017 - CSW01_01195 0.20 +0.8 231,017 - CSW01_01195 0.20 -1.7 231,017 - CSW01_01195 0.20 +3.6 231,149 + CSW01_01195 0.33 -1.0 231,149 + CSW01_01195 0.33 -2.3 231,265 + CSW01_01195 0.43 -0.9 231,275 + CSW01_01195 0.44 +1.2 231,283 - CSW01_01195 0.45 +2.2 231,283 - CSW01_01195 0.45 +2.9 231,285 + CSW01_01195 0.45 +1.2 231,293 - CSW01_01195 0.46 +2.0 231,301 - CSW01_01195 0.47 -0.7 231,327 + CSW01_01195 0.49 +2.5 231,383 + CSW01_01195 0.54 +2.2 231,428 - CSW01_01195 0.59 +1.8 231,710 - CSW01_01195 0.85 +2.9 231,836 - +1.2 231,847 - +1.7 231,847 - -0.5 231,847 - +1.7 231,847 - +3.6 231,847 - -0.2 231,847 - +3.1 231,849 + +3.1 231,857 - -3.1 231,857 - -1.7 231,857 - -0.5 231,857 - -0.0 231,857 - -1.7 231,866 + +1.5 231,874 - -0.6 231,874 - +2.0 231,874 - +1.1 231,892 + -0.1 231,906 + -0.1 231,911 + -2.7 231,919 - -0.1 231,964 + -1.1 232,648 + +0.6 232,660 + -3.1 232,660 + +1.1 232,724 + +0.8 232,738 + -1.6 232,746 + -0.3 232,746 + -3.5 232,747 + -1.0 232,747 + +1.3 232,747 + +0.4 232,747 + -2.3 232,747 + -0.3 232,747 + -0.8 232,747 + +1.3 232,747 + -0.1 232,747 + -3.8 232,747 + -1.9 232,747 + +0.9 232,747 + +0.7 232,747 + -1.1 232,747 + +1.0 232,747 + -0.1 232,747 + -3.8 232,747 + -4.7 232,747 + +1.7 232,747 + -0.2 232,747 + +0.0 232,747 + -0.1 232,747 + -3.0 232,747 + +1.0 232,747 + -3.1 232,747 + -0.4 232,747 + +0.9 232,747 + -0.8 232,747 + -0.7 232,747 + +1.9 232,747 + +0.1 232,747 + -2.5 232,747 + -1.2 232,747 + -0.6 232,747 + +0.0 232,747 + -0.9 232,747 + +0.6 232,747 + +0.3 232,747 + +2.4 232,749 + -0.9 232,755 + -1.2 232,755 - +0.6 232,755 - -0.6 232,755 - -0.1 232,755 - -3.1 232,755 - -1.4 232,755 - +1.6 232,755 - +1.6 232,755 - +0.5 232,755 - +0.8 232,755 - -0.3 232,755 - +1.1 232,755 - +0.8 232,755 - +0.3 232,755 - +2.2 232,755 - -0.9 232,755 - +0.9 232,755 - +0.7 232,755 - -0.0 232,755 - +1.2 232,755 - +0.6 232,755 - -0.3 232,757 + +1.0 232,765 - -0.2 232,766 + -2.0 232,766 + +0.1 232,766 + +1.5 232,766 + -1.9 232,766 + -1.0 232,766 + +2.0 232,766 + +1.7 232,766 + +0.8 232,766 + -1.1 232,766 - +0.8 232,771 + +0.0 232,771 + -3.1 232,774 + +0.4 232,774 - -3.3 232,774 - +1.1 232,774 - +0.2 232,774 - +3.4 232,774 - -0.1 232,779 - -3.9 232,779 - -2.1 232,923 + CSW01_01205 0.22 -0.7 232,968 + CSW01_01205 0.27 +0.3 232,968 + CSW01_01205 0.27 +0.5 232,968 + CSW01_01205 0.27 +0.3 232,968 + CSW01_01205 0.27 +1.5 232,968 + CSW01_01205 0.27 +0.8 232,976 - CSW01_01205 0.28 -0.5 232,976 - CSW01_01205 0.28 +0.4 232,976 - CSW01_01205 0.28 -0.3 232,976 - CSW01_01205 0.28 +0.6 232,976 - CSW01_01205 0.28 -2.0 233,011 - CSW01_01205 0.31 +1.6 233,074 - CSW01_01205 0.38 +0.5 233,075 + CSW01_01205 0.38 -0.6 233,075 + CSW01_01205 0.38 +0.6 233,075 + CSW01_01205 0.38 +0.2 233,075 + CSW01_01205 0.38 +1.6 233,075 + CSW01_01205 0.38 +0.2 233,075 + CSW01_01205 0.38 -3.7 233,075 + CSW01_01205 0.38 -0.0 233,083 - CSW01_01205 0.39 -0.3 233,083 - CSW01_01205 0.39 -1.1 233,083 - CSW01_01205 0.39 -3.3 233,085 + CSW01_01205 0.39 +1.3 233,085 + CSW01_01205 0.39 +1.2 233,085 - CSW01_01205 0.39 -0.7 233,088 - CSW01_01205 0.39 -0.8 233,093 + CSW01_01205 0.40 -1.1 233,093 - CSW01_01205 0.40 +0.2 233,093 - CSW01_01205 0.40 -1.7 233,093 - CSW01_01205 0.40 +0.7 233,093 - CSW01_01205 0.40 +0.5 233,098 + CSW01_01205 0.40 -0.5 233,135 - CSW01_01205 0.44 -3.4 233,137 - CSW01_01205 0.44 +0.9 233,137 - CSW01_01205 0.44 -0.9 233,139 + CSW01_01205 0.45 +0.4 233,139 + CSW01_01205 0.45 -1.9 233,139 + CSW01_01205 0.45 +0.4 233,144 + CSW01_01205 0.45 -4.6 233,144 + CSW01_01205 0.45 -1.8 233,146 + CSW01_01205 0.45 +0.5 233,147 - CSW01_01205 0.46 +0.6 233,147 - CSW01_01205 0.46 -0.7 233,147 - CSW01_01205 0.46 +0.6 233,148 - CSW01_01205 0.46 +0.5 233,148 - CSW01_01205 0.46 -0.1 233,152 - CSW01_01205 0.46 -4.2 233,154 - CSW01_01205 0.46 -1.0 233,176 + CSW01_01205 0.49 -3.9 233,186 + CSW01_01205 0.50 -3.5 233,186 + CSW01_01205 0.50 +0.9 233,186 + CSW01_01205 0.50 +0.6 233,186 + CSW01_01205 0.50 +0.6 233,186 + CSW01_01205 0.50 -2.2 233,186 + CSW01_01205 0.50 -0.0 233,194 - CSW01_01205 0.50 -0.8 233,194 - CSW01_01205 0.50 +0.0 233,194 - CSW01_01205 0.50 +1.4 233,194 - CSW01_01205 0.50 -1.3 233,194 - CSW01_01205 0.50 +1.0 233,195 - CSW01_01205 0.51 +0.4 233,195 - CSW01_01205 0.51 +0.0 233,195 - CSW01_01205 0.51 -0.6 233,201 - CSW01_01205 0.51 -1.3 233,225 - CSW01_01205 0.54 +1.0 233,225 - CSW01_01205 0.54 +0.9 233,242 + CSW01_01205 0.55 -1.4 233,242 + CSW01_01205 0.55 -2.7 233,247 + CSW01_01205 0.56 -1.6 233,255 - CSW01_01205 0.57 +0.8 233,257 + CSW01_01205 0.57 +0.9 233,257 + CSW01_01205 0.57 +1.1 233,257 + CSW01_01205 0.57 +1.3 233,257 + CSW01_01205 0.57 -3.1 233,257 + CSW01_01205 0.57 +0.0 233,265 - CSW01_01205 0.58 -0.0 233,265 - CSW01_01205 0.58 -0.9 233,265 - CSW01_01205 0.58 +0.6 233,265 - CSW01_01205 0.58 -3.8 233,267 + CSW01_01205 0.58 +1.4 233,275 - CSW01_01205 0.59 +0.2 233,290 + CSW01_01205 0.60 +0.9 233,290 + CSW01_01205 0.60 -0.5 233,290 + CSW01_01205 0.60 -0.9 233,290 + CSW01_01205 0.60 +1.1 233,290 + CSW01_01205 0.60 -0.6 233,290 + CSW01_01205 0.60 -2.3 233,298 - CSW01_01205 0.61 +1.6 233,298 - CSW01_01205 0.61 -0.0 233,428 + CSW01_01205 0.75 +0.1 233,428 + CSW01_01205 0.75 +1.7 233,430 + CSW01_01205 0.75 +0.8 233,430 + CSW01_01205 0.75 -1.2 233,430 + CSW01_01205 0.75 -1.0 233,436 - CSW01_01205 0.76 -0.4 233,439 + CSW01_01205 0.76 -4.6 233,439 + CSW01_01205 0.76 +0.9 233,439 + CSW01_01205 0.76 -3.3 233,439 + CSW01_01205 0.76 -0.1 233,439 + CSW01_01205 0.76 +0.9 233,439 + CSW01_01205 0.76 +1.7 233,440 + CSW01_01205 0.76 -4.3 233,440 + CSW01_01205 0.76 +0.3 233,440 + CSW01_01205 0.76 -0.3 233,440 + CSW01_01205 0.76 -0.9 233,440 + CSW01_01205 0.76 -3.9 233,447 - CSW01_01205 0.77 -0.3 233,447 - CSW01_01205 0.77 +0.7 233,451 + CSW01_01205 0.77 +0.9 233,458 - CSW01_01205 0.78 +0.2 233,459 - CSW01_01205 0.78 -2.2 233,477 - CSW01_01205 0.80 +0.4 233,482 - CSW01_01205 0.80 -0.4 233,506 + CSW01_01205 0.83 -0.5 233,514 - CSW01_01205 0.84 -3.8 233,553 + CSW01_01205 0.88 -0.1
Or see this region's nucleotide sequence