Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00945

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00935 and CSW01_00940 are separated by 66 nucleotidesCSW01_00940 and CSW01_00945 are separated by 208 nucleotidesCSW01_00945 and CSW01_00950 are separated by 102 nucleotides CSW01_00935: CSW01_00935 - deoxycytidylate deaminase, at 175,344 to 176,942 _00935 CSW01_00940: CSW01_00940 - hypothetical protein, at 177,009 to 177,242 _00940 CSW01_00945: CSW01_00945 - XRE family transcriptional regulator, at 177,451 to 177,759 _00945 CSW01_00950: CSW01_00950 - transcriptional regulator, at 177,862 to 178,425 _00950 Position (kb) 177 178Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 176.454 kb on - strand, within CSW01_00935at 176.455 kb on - strand, within CSW01_00935at 176.500 kb on + strand, within CSW01_00935at 176.547 kb on + strand, within CSW01_00935at 176.562 kb on - strand, within CSW01_00935at 176.601 kb on + strand, within CSW01_00935at 176.609 kb on + strand, within CSW01_00935at 176.612 kb on - strand, within CSW01_00935at 176.646 kb on + strand, within CSW01_00935at 176.654 kb on - strand, within CSW01_00935at 176.661 kb on - strand, within CSW01_00935at 176.663 kb on - strand, within CSW01_00935at 176.663 kb on - strand, within CSW01_00935at 176.690 kb on - strand, within CSW01_00935at 176.711 kb on - strand, within CSW01_00935at 176.778 kb on + strand, within CSW01_00935at 176.778 kb on + strand, within CSW01_00935at 176.786 kb on - strandat 176.786 kb on - strandat 176.792 kb on + strandat 176.797 kb on + strandat 176.797 kb on + strandat 176.800 kb on + strandat 176.805 kb on - strandat 176.805 kb on - strandat 176.814 kb on + strandat 176.814 kb on + strandat 176.814 kb on + strandat 176.816 kb on - strandat 176.824 kb on + strandat 176.830 kb on - strandat 176.832 kb on - strandat 176.832 kb on - strandat 176.840 kb on - strandat 176.902 kb on - strandat 176.923 kb on + strandat 177.010 kb on - strandat 177.123 kb on - strand, within CSW01_00940at 177.152 kb on - strand, within CSW01_00940at 177.265 kb on - strandat 177.274 kb on - strandat 177.490 kb on + strand, within CSW01_00945at 177.492 kb on + strand, within CSW01_00945at 177.492 kb on + strand, within CSW01_00945at 177.511 kb on + strand, within CSW01_00945at 177.528 kb on - strand, within CSW01_00945at 177.598 kb on + strand, within CSW01_00945at 177.601 kb on + strand, within CSW01_00945at 177.611 kb on + strand, within CSW01_00945at 177.614 kb on - strand, within CSW01_00945at 177.616 kb on + strand, within CSW01_00945at 177.616 kb on + strand, within CSW01_00945at 177.616 kb on + strand, within CSW01_00945at 177.616 kb on + strand, within CSW01_00945at 177.619 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.634 kb on - strand, within CSW01_00945at 177.669 kb on + strand, within CSW01_00945at 177.671 kb on + strand, within CSW01_00945at 177.671 kb on + strand, within CSW01_00945at 177.679 kb on - strand, within CSW01_00945at 177.690 kb on - strand, within CSW01_00945at 177.861 kb on + strandat 177.867 kb on - strandat 177.874 kb on + strandat 177.879 kb on + strandat 177.882 kb on - strandat 177.884 kb on + strandat 177.884 kb on + strandat 177.892 kb on - strandat 177.892 kb on - strandat 177.892 kb on - strandat 177.892 kb on - strandat 177.894 kb on + strandat 177.961 kb on - strand, within CSW01_00950at 177.978 kb on + strand, within CSW01_00950at 177.996 kb on - strand, within CSW01_00950at 178.044 kb on + strand, within CSW01_00950at 178.044 kb on + strand, within CSW01_00950at 178.051 kb on + strand, within CSW01_00950at 178.052 kb on + strand, within CSW01_00950at 178.088 kb on - strand, within CSW01_00950at 178.155 kb on - strand, within CSW01_00950at 178.158 kb on + strand, within CSW01_00950at 178.158 kb on + strand, within CSW01_00950at 178.158 kb on + strand, within CSW01_00950at 178.163 kb on + strand, within CSW01_00950at 178.166 kb on - strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.174 kb on + strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.199 kb on - strand, within CSW01_00950at 178.201 kb on + strand, within CSW01_00950at 178.209 kb on + strand, within CSW01_00950at 178.211 kb on - strand, within CSW01_00950at 178.303 kb on - strand, within CSW01_00950at 178.328 kb on + strand, within CSW01_00950at 178.329 kb on + strand, within CSW01_00950at 178.329 kb on + strand, within CSW01_00950at 178.330 kb on + strand, within CSW01_00950at 178.338 kb on - strand, within CSW01_00950at 178.338 kb on - strand, within CSW01_00950at 178.338 kb on - strand, within CSW01_00950at 178.356 kb on + strand, within CSW01_00950at 178.389 kb on + strandat 178.523 kb on + strandat 178.530 kb on + strandat 178.538 kb on + strandat 178.546 kb on - strandat 178.565 kb on + strandat 178.565 kb on + strandat 178.644 kb on - strandat 178.715 kb on + strandat 178.725 kb on + strandat 178.745 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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176,454 - CSW01_00935 0.69 -4.0
176,455 - CSW01_00935 0.69 -1.1
176,500 + CSW01_00935 0.72 +0.3
176,547 + CSW01_00935 0.75 +0.1
176,562 - CSW01_00935 0.76 -1.0
176,601 + CSW01_00935 0.79 -0.1
176,609 + CSW01_00935 0.79 -4.5
176,612 - CSW01_00935 0.79 -2.4
176,646 + CSW01_00935 0.81 -0.3
176,654 - CSW01_00935 0.82 -0.5
176,661 - CSW01_00935 0.82 +0.9
176,663 - CSW01_00935 0.82 -2.0
176,663 - CSW01_00935 0.82 -3.6
176,690 - CSW01_00935 0.84 +1.0
176,711 - CSW01_00935 0.85 +0.8
176,778 + CSW01_00935 0.90 -3.3
176,778 + CSW01_00935 0.90 -0.3
176,786 - -3.6
176,786 - -0.3
176,792 + +0.1
176,797 + -0.9
176,797 + -2.3
176,800 + -3.4
176,805 - +0.5
176,805 - +1.5
176,814 + -1.1
176,814 + -0.4
176,814 + +1.8
176,816 - -2.9
176,824 + -2.6
176,830 - +1.5
176,832 - +1.5
176,832 - -0.5
176,840 - -2.4
176,902 - -2.6
176,923 + -0.9
177,010 - -3.1
177,123 - CSW01_00940 0.49 +0.6
177,152 - CSW01_00940 0.61 +1.0
177,265 - -3.1
177,274 - -2.5
177,490 + CSW01_00945 0.13 -0.0
177,492 + CSW01_00945 0.13 -2.7
177,492 + CSW01_00945 0.13 +0.3
177,511 + CSW01_00945 0.19 -0.4
177,528 - CSW01_00945 0.25 +2.3
177,598 + CSW01_00945 0.48 +1.9
177,601 + CSW01_00945 0.49 -1.2
177,611 + CSW01_00945 0.52 +0.2
177,614 - CSW01_00945 0.53 +0.5
177,616 + CSW01_00945 0.53 +0.8
177,616 + CSW01_00945 0.53 -3.4
177,616 + CSW01_00945 0.53 -1.4
177,616 + CSW01_00945 0.53 -1.9
177,619 - CSW01_00945 0.54 -0.0
177,624 - CSW01_00945 0.56 +1.1
177,624 - CSW01_00945 0.56 +0.3
177,624 - CSW01_00945 0.56 +1.1
177,624 - CSW01_00945 0.56 +0.5
177,624 - CSW01_00945 0.56 +0.1
177,624 - CSW01_00945 0.56 -0.0
177,624 - CSW01_00945 0.56 +1.3
177,634 - CSW01_00945 0.59 +0.1
177,669 + CSW01_00945 0.71 +0.9
177,671 + CSW01_00945 0.71 +1.6
177,671 + CSW01_00945 0.71 +0.1
177,679 - CSW01_00945 0.74 +0.4
177,690 - CSW01_00945 0.77 +1.0
177,861 + +0.5
177,867 - +0.2
177,874 + +1.1
177,879 + +1.1
177,882 - -0.9
177,884 + -1.1
177,884 + -3.0
177,892 - +0.2
177,892 - -1.2
177,892 - +0.8
177,892 - +1.3
177,894 + +1.5
177,961 - CSW01_00950 0.18 +1.1
177,978 + CSW01_00950 0.21 +1.3
177,996 - CSW01_00950 0.24 -0.0
178,044 + CSW01_00950 0.32 +0.2
178,044 + CSW01_00950 0.32 +0.9
178,051 + CSW01_00950 0.34 +0.4
178,052 + CSW01_00950 0.34 -3.1
178,088 - CSW01_00950 0.40 +1.0
178,155 - CSW01_00950 0.52 +0.9
178,158 + CSW01_00950 0.52 -0.9
178,158 + CSW01_00950 0.52 +0.1
178,158 + CSW01_00950 0.52 -0.3
178,163 + CSW01_00950 0.53 -0.4
178,166 - CSW01_00950 0.54 -1.3
178,168 + CSW01_00950 0.54 -3.8
178,168 + CSW01_00950 0.54 -2.1
178,168 + CSW01_00950 0.54 +0.8
178,168 + CSW01_00950 0.54 +0.7
178,168 + CSW01_00950 0.54 +1.2
178,168 + CSW01_00950 0.54 -2.3
178,168 + CSW01_00950 0.54 +0.6
178,174 + CSW01_00950 0.55 -1.7
178,176 - CSW01_00950 0.56 -0.4
178,176 - CSW01_00950 0.56 +0.1
178,176 - CSW01_00950 0.56 -0.3
178,176 - CSW01_00950 0.56 -3.4
178,176 - CSW01_00950 0.56 +0.4
178,199 - CSW01_00950 0.60 +1.3
178,201 + CSW01_00950 0.60 +0.7
178,209 + CSW01_00950 0.62 -1.3
178,211 - CSW01_00950 0.62 -2.8
178,303 - CSW01_00950 0.78 +0.0
178,328 + CSW01_00950 0.83 +1.2
178,329 + CSW01_00950 0.83 +1.2
178,329 + CSW01_00950 0.83 +0.2
178,330 + CSW01_00950 0.83 +1.0
178,338 - CSW01_00950 0.84 -4.3
178,338 - CSW01_00950 0.84 +1.2
178,338 - CSW01_00950 0.84 +0.2
178,356 + CSW01_00950 0.88 +0.2
178,389 + +0.0
178,523 + -0.0
178,530 + +1.6
178,538 + +0.5
178,546 - -0.2
178,565 + -3.3
178,565 + +0.3
178,644 - -1.0
178,715 + -0.6
178,725 + +0.7
178,745 + +1.4

Or see this region's nucleotide sequence