Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00865 and CSW01_00870 are separated by 66 nucleotides CSW01_00870 and CSW01_00875 are separated by 289 nucleotides CSW01_00875 and CSW01_00880 are separated by 35 nucleotides CSW01_00880 and CSW01_00885 are separated by 61 nucleotides CSW01_00885 and CSW01_00890 are separated by 70 nucleotides CSW01_00890 and CSW01_00895 are separated by 61 nucleotides
CSW01_00865: CSW01_00865 - DNA helicase Rep, at 164,409 to 166,424
_00865
CSW01_00870: CSW01_00870 - cytochrome c5 family protein, at 166,491 to 166,898
_00870
CSW01_00875: CSW01_00875 - tRNA-Arg, at 167,188 to 167,264
_00875
CSW01_00880: CSW01_00880 - tRNA-His, at 167,300 to 167,375
_00880
CSW01_00885: CSW01_00885 - tRNA-Pro, at 167,437 to 167,513
_00885
CSW01_00890: CSW01_00890 - tRNA-His, at 167,584 to 167,659
_00890
CSW01_00895: CSW01_00895 - tRNA-Pro, at 167,721 to 167,797
_00895
Position (kb) 166
167 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 166.319 kb on + strand at 166.357 kb on + strand at 166.408 kb on - strand at 166.491 kb on + strand at 166.511 kb on + strand at 166.609 kb on + strand, within CSW01_00870 at 166.609 kb on + strand, within CSW01_00870 at 166.617 kb on - strand, within CSW01_00870 at 166.617 kb on - strand, within CSW01_00870 at 166.666 kb on + strand, within CSW01_00870 at 166.683 kb on + strand, within CSW01_00870 at 166.683 kb on + strand, within CSW01_00870 at 166.744 kb on + strand, within CSW01_00870 at 166.794 kb on - strand, within CSW01_00870 at 166.794 kb on - strand, within CSW01_00870 at 166.859 kb on - strand at 166.872 kb on + strand at 166.880 kb on - strand at 167.004 kb on + strand at 167.068 kb on - strand at 167.068 kb on - strand at 167.523 kb on + strand at 167.536 kb on - strand at 167.806 kb on - strand at 167.877 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 166,319 + -3.4 166,357 + +1.6 166,408 - -3.0 166,491 + -3.4 166,511 + +0.7 166,609 + CSW01_00870 0.29 -0.6 166,609 + CSW01_00870 0.29 -1.4 166,617 - CSW01_00870 0.31 -2.6 166,617 - CSW01_00870 0.31 -0.3 166,666 + CSW01_00870 0.43 -1.9 166,683 + CSW01_00870 0.47 -3.4 166,683 + CSW01_00870 0.47 -4.1 166,744 + CSW01_00870 0.62 -2.4 166,794 - CSW01_00870 0.74 -0.4 166,794 - CSW01_00870 0.74 -5.0 166,859 - +0.2 166,872 + -1.0 166,880 - -1.1 167,004 + +0.5 167,068 - -0.9 167,068 - -0.6 167,523 + +0.8 167,536 - -1.1 167,806 - +0.4 167,877 + -0.6
Or see this region's nucleotide sequence