Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00735

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00725 and CSW01_00730 are separated by 116 nucleotidesCSW01_00730 and CSW01_00735 are separated by 48 nucleotidesCSW01_00735 and CSW01_00740 overlap by 4 nucleotidesCSW01_00740 and CSW01_00745 are separated by 203 nucleotides CSW01_00725: CSW01_00725 - hypothetical protein, at 134,837 to 135,094 _00725 CSW01_00730: CSW01_00730 - lysoplasmalogenase, at 135,211 to 135,840 _00730 CSW01_00735: CSW01_00735 - DUF1145 domain-containing protein, at 135,889 to 136,155 _00735 CSW01_00740: CSW01_00740 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 136,152 to 136,751 _00740 CSW01_00745: CSW01_00745 - signal recognition particle-docking protein FtsY, at 136,955 to 138,130 _00745 Position (kb) 135 136 137Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 135.179 kb on + strandat 135.179 kb on + strandat 135.179 kb on + strandat 135.187 kb on - strandat 135.187 kb on - strandat 135.200 kb on + strandat 135.274 kb on + strand, within CSW01_00730at 135.282 kb on + strand, within CSW01_00730at 135.290 kb on - strand, within CSW01_00730at 135.300 kb on - strand, within CSW01_00730at 135.337 kb on - strand, within CSW01_00730at 135.337 kb on - strand, within CSW01_00730at 135.337 kb on - strand, within CSW01_00730at 135.343 kb on + strand, within CSW01_00730at 135.353 kb on + strand, within CSW01_00730at 135.353 kb on + strand, within CSW01_00730at 135.362 kb on + strand, within CSW01_00730at 135.520 kb on + strand, within CSW01_00730at 135.601 kb on - strand, within CSW01_00730at 135.619 kb on + strand, within CSW01_00730at 135.645 kb on + strand, within CSW01_00730at 135.712 kb on + strand, within CSW01_00730at 135.778 kb on + strandat 135.811 kb on + strandat 135.811 kb on + strandat 135.811 kb on + strandat 135.819 kb on - strandat 135.819 kb on - strandat 135.819 kb on - strandat 136.016 kb on - strand, within CSW01_00735at 136.096 kb on - strand, within CSW01_00735at 136.144 kb on - strandat 136.144 kb on - strandat 136.144 kb on - strandat 136.149 kb on - strandat 136.171 kb on - strandat 136.262 kb on + strand, within CSW01_00740at 136.264 kb on + strand, within CSW01_00740at 136.264 kb on + strand, within CSW01_00740at 136.270 kb on - strand, within CSW01_00740at 136.272 kb on - strand, within CSW01_00740at 136.310 kb on + strand, within CSW01_00740at 136.365 kb on + strand, within CSW01_00740at 136.365 kb on + strand, within CSW01_00740at 136.365 kb on + strand, within CSW01_00740at 136.365 kb on + strand, within CSW01_00740at 136.372 kb on + strand, within CSW01_00740at 136.372 kb on + strand, within CSW01_00740at 136.373 kb on - strand, within CSW01_00740at 136.443 kb on + strand, within CSW01_00740at 136.443 kb on + strand, within CSW01_00740at 136.451 kb on - strand, within CSW01_00740at 136.451 kb on - strand, within CSW01_00740at 136.451 kb on - strand, within CSW01_00740at 136.453 kb on + strand, within CSW01_00740at 136.463 kb on + strand, within CSW01_00740at 136.463 kb on + strand, within CSW01_00740at 136.463 kb on + strand, within CSW01_00740at 136.463 kb on + strand, within CSW01_00740at 136.463 kb on + strand, within CSW01_00740at 136.471 kb on - strand, within CSW01_00740at 136.471 kb on - strand, within CSW01_00740at 136.471 kb on - strand, within CSW01_00740at 136.492 kb on - strand, within CSW01_00740at 136.506 kb on + strand, within CSW01_00740at 136.519 kb on - strand, within CSW01_00740at 136.524 kb on + strand, within CSW01_00740at 136.524 kb on + strand, within CSW01_00740at 136.524 kb on + strand, within CSW01_00740at 136.524 kb on + strand, within CSW01_00740at 136.530 kb on + strand, within CSW01_00740at 136.532 kb on - strand, within CSW01_00740at 136.532 kb on - strand, within CSW01_00740at 136.532 kb on - strand, within CSW01_00740at 136.532 kb on - strand, within CSW01_00740at 136.645 kb on - strand, within CSW01_00740at 136.647 kb on - strand, within CSW01_00740at 136.689 kb on - strand, within CSW01_00740at 136.692 kb on - strandat 136.744 kb on - strandat 136.774 kb on + strandat 136.782 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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135,179 + -2.4
135,179 + -0.3
135,179 + +1.4
135,187 - -0.2
135,187 - -3.6
135,200 + -4.0
135,274 + CSW01_00730 0.10 +0.9
135,282 + CSW01_00730 0.11 -3.0
135,290 - CSW01_00730 0.13 -1.8
135,300 - CSW01_00730 0.14 +1.2
135,337 - CSW01_00730 0.20 +0.6
135,337 - CSW01_00730 0.20 -1.6
135,337 - CSW01_00730 0.20 +0.9
135,343 + CSW01_00730 0.21 +0.9
135,353 + CSW01_00730 0.23 +0.6
135,353 + CSW01_00730 0.23 +2.0
135,362 + CSW01_00730 0.24 -0.8
135,520 + CSW01_00730 0.49 +0.1
135,601 - CSW01_00730 0.62 +0.9
135,619 + CSW01_00730 0.65 -1.4
135,645 + CSW01_00730 0.69 +0.6
135,712 + CSW01_00730 0.80 +0.2
135,778 + +0.8
135,811 + -0.1
135,811 + -1.6
135,811 + -0.4
135,819 - -1.2
135,819 - +0.1
135,819 - -0.4
136,016 - CSW01_00735 0.48 -2.5
136,096 - CSW01_00735 0.78 +0.8
136,144 - +1.7
136,144 - -0.1
136,144 - +0.5
136,149 - -0.4
136,171 - -0.2
136,262 + CSW01_00740 0.18 +0.8
136,264 + CSW01_00740 0.19 +0.8
136,264 + CSW01_00740 0.19 +1.3
136,270 - CSW01_00740 0.20 -1.8
136,272 - CSW01_00740 0.20 -2.2
136,310 + CSW01_00740 0.26 -0.9
136,365 + CSW01_00740 0.35 +1.5
136,365 + CSW01_00740 0.35 -0.7
136,365 + CSW01_00740 0.35 -1.6
136,365 + CSW01_00740 0.35 -4.1
136,372 + CSW01_00740 0.37 +0.4
136,372 + CSW01_00740 0.37 -0.2
136,373 - CSW01_00740 0.37 +0.0
136,443 + CSW01_00740 0.48 +0.7
136,443 + CSW01_00740 0.48 -0.8
136,451 - CSW01_00740 0.50 -0.3
136,451 - CSW01_00740 0.50 +0.4
136,451 - CSW01_00740 0.50 +1.8
136,453 + CSW01_00740 0.50 +0.7
136,463 + CSW01_00740 0.52 -0.0
136,463 + CSW01_00740 0.52 +0.1
136,463 + CSW01_00740 0.52 -0.2
136,463 + CSW01_00740 0.52 -2.5
136,463 + CSW01_00740 0.52 -0.2
136,471 - CSW01_00740 0.53 +1.8
136,471 - CSW01_00740 0.53 -2.3
136,471 - CSW01_00740 0.53 -1.2
136,492 - CSW01_00740 0.57 +0.2
136,506 + CSW01_00740 0.59 -0.0
136,519 - CSW01_00740 0.61 -0.6
136,524 + CSW01_00740 0.62 -0.1
136,524 + CSW01_00740 0.62 -2.8
136,524 + CSW01_00740 0.62 +0.6
136,524 + CSW01_00740 0.62 -0.2
136,530 + CSW01_00740 0.63 +1.0
136,532 - CSW01_00740 0.63 -0.0
136,532 - CSW01_00740 0.63 -1.6
136,532 - CSW01_00740 0.63 -0.1
136,532 - CSW01_00740 0.63 -2.2
136,645 - CSW01_00740 0.82 +1.2
136,647 - CSW01_00740 0.82 +0.0
136,689 - CSW01_00740 0.90 -3.9
136,692 - -0.2
136,744 - -0.2
136,774 + -1.6
136,782 - +1.5

Or see this region's nucleotide sequence