Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00630

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00620 and CSW01_00625 are separated by 105 nucleotidesCSW01_00625 and CSW01_00630 overlap by 24 nucleotidesCSW01_00630 and CSW01_00635 are separated by 32 nucleotides CSW01_00620: CSW01_00620 - class I adenylate cyclase, at 116,054 to 118,585 _00620 CSW01_00625: CSW01_00625 - iron donor protein CyaY, at 118,691 to 119,005 _00625 CSW01_00630: CSW01_00630 - lipopeptide, at 118,982 to 119,197 _00630 CSW01_00635: CSW01_00635 - diaminopimelate decarboxylase, at 119,230 to 120,483 _00635 Position (kb) 118 119 120Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 118.059 kb on - strand, within CSW01_00620at 118.091 kb on + strand, within CSW01_00620at 118.096 kb on + strand, within CSW01_00620at 118.096 kb on + strand, within CSW01_00620at 118.096 kb on + strand, within CSW01_00620at 118.104 kb on - strand, within CSW01_00620at 118.119 kb on - strand, within CSW01_00620at 118.156 kb on - strand, within CSW01_00620at 118.201 kb on + strand, within CSW01_00620at 118.209 kb on - strand, within CSW01_00620at 118.209 kb on - strand, within CSW01_00620at 118.283 kb on + strand, within CSW01_00620at 118.283 kb on + strand, within CSW01_00620at 118.380 kb on - strandat 118.500 kb on + strandat 118.508 kb on - strandat 118.526 kb on + strandat 118.545 kb on + strandat 118.548 kb on - strandat 118.558 kb on - strandat 118.629 kb on + strandat 118.697 kb on - strandat 118.708 kb on + strandat 118.734 kb on + strand, within CSW01_00625at 118.742 kb on - strand, within CSW01_00625at 118.742 kb on - strand, within CSW01_00625at 119.153 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.206 kb on + strandat 119.232 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.309 kb on + strandat 119.341 kb on + strandat 119.349 kb on + strandat 119.349 kb on - strandat 119.431 kb on + strand, within CSW01_00635at 119.455 kb on + strand, within CSW01_00635at 119.469 kb on - strand, within CSW01_00635at 119.510 kb on + strand, within CSW01_00635at 119.527 kb on + strand, within CSW01_00635at 119.534 kb on + strand, within CSW01_00635at 119.535 kb on - strand, within CSW01_00635at 119.639 kb on - strand, within CSW01_00635at 119.692 kb on - strand, within CSW01_00635at 119.692 kb on - strand, within CSW01_00635at 119.725 kb on + strand, within CSW01_00635at 119.761 kb on - strand, within CSW01_00635at 119.772 kb on + strand, within CSW01_00635at 119.772 kb on + strand, within CSW01_00635at 119.772 kb on + strand, within CSW01_00635at 119.772 kb on + strand, within CSW01_00635at 119.780 kb on - strand, within CSW01_00635at 119.780 kb on - strand, within CSW01_00635at 119.785 kb on + strand, within CSW01_00635at 119.785 kb on + strand, within CSW01_00635at 119.785 kb on + strand, within CSW01_00635at 119.792 kb on + strand, within CSW01_00635at 119.793 kb on - strand, within CSW01_00635at 119.793 kb on - strand, within CSW01_00635at 119.834 kb on + strand, within CSW01_00635at 119.839 kb on + strand, within CSW01_00635at 119.930 kb on + strand, within CSW01_00635at 119.955 kb on - strand, within CSW01_00635at 119.956 kb on - strand, within CSW01_00635at 119.966 kb on - strand, within CSW01_00635at 119.997 kb on + strand, within CSW01_00635at 120.004 kb on + strand, within CSW01_00635at 120.017 kb on + strand, within CSW01_00635at 120.017 kb on + strand, within CSW01_00635at 120.183 kb on - strand, within CSW01_00635

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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118,059 - CSW01_00620 0.79 -1.2
118,091 + CSW01_00620 0.80 -2.3
118,096 + CSW01_00620 0.81 -3.0
118,096 + CSW01_00620 0.81 +4.4
118,096 + CSW01_00620 0.81 +1.9
118,104 - CSW01_00620 0.81 +2.2
118,119 - CSW01_00620 0.82 +0.8
118,156 - CSW01_00620 0.83 +1.9
118,201 + CSW01_00620 0.85 -1.2
118,209 - CSW01_00620 0.85 +3.2
118,209 - CSW01_00620 0.85 -1.9
118,283 + CSW01_00620 0.88 +2.2
118,283 + CSW01_00620 0.88 +1.9
118,380 - +2.0
118,500 + +2.4
118,508 - -2.1
118,526 + +0.8
118,545 + -0.3
118,548 - +1.7
118,558 - -1.9
118,629 + -3.7
118,697 - -4.1
118,708 + +0.7
118,734 + CSW01_00625 0.14 -2.2
118,742 - CSW01_00625 0.16 -1.6
118,742 - CSW01_00625 0.16 -0.8
119,153 + CSW01_00630 0.79 -1.1
119,155 + CSW01_00630 0.80 +0.6
119,155 + CSW01_00630 0.80 -3.6
119,155 + CSW01_00630 0.80 -0.9
119,155 + CSW01_00630 0.80 -0.3
119,155 + CSW01_00630 0.80 -0.9
119,155 + CSW01_00630 0.80 +1.6
119,155 + CSW01_00630 0.80 +0.9
119,155 + CSW01_00630 0.80 -2.1
119,163 - CSW01_00630 0.84 -0.3
119,163 - CSW01_00630 0.84 -0.3
119,163 - CSW01_00630 0.84 -5.1
119,163 - CSW01_00630 0.84 +1.0
119,163 - CSW01_00630 0.84 -0.2
119,163 - CSW01_00630 0.84 -3.0
119,163 - CSW01_00630 0.84 +0.7
119,206 + +0.2
119,232 + +0.6
119,262 + -2.4
119,262 + +0.7
119,262 + -0.9
119,262 + -2.5
119,262 + -1.1
119,262 + +0.9
119,262 + -2.8
119,262 + -3.3
119,262 + +0.8
119,262 + -0.2
119,262 + -3.7
119,262 + -0.5
119,262 + +0.5
119,262 + -2.2
119,262 + +1.1
119,270 - -0.1
119,270 - +1.1
119,270 - -3.4
119,270 - +1.4
119,270 - +2.1
119,270 - -1.2
119,270 - +0.9
119,270 - +0.5
119,270 - -0.5
119,270 - -3.8
119,270 - +0.7
119,270 - +0.6
119,270 - +0.6
119,309 + -2.4
119,341 + -2.1
119,349 + -0.2
119,349 - -3.0
119,431 + CSW01_00635 0.16 -0.2
119,455 + CSW01_00635 0.18 -0.3
119,469 - CSW01_00635 0.19 +0.2
119,510 + CSW01_00635 0.22 -2.3
119,527 + CSW01_00635 0.24 +0.0
119,534 + CSW01_00635 0.24 -0.0
119,535 - CSW01_00635 0.24 +0.3
119,639 - CSW01_00635 0.33 +0.3
119,692 - CSW01_00635 0.37 +1.6
119,692 - CSW01_00635 0.37 +0.9
119,725 + CSW01_00635 0.39 -3.2
119,761 - CSW01_00635 0.42 +0.9
119,772 + CSW01_00635 0.43 +0.6
119,772 + CSW01_00635 0.43 -1.1
119,772 + CSW01_00635 0.43 -2.0
119,772 + CSW01_00635 0.43 -1.4
119,780 - CSW01_00635 0.44 +2.8
119,780 - CSW01_00635 0.44 -3.2
119,785 + CSW01_00635 0.44 +1.1
119,785 + CSW01_00635 0.44 +1.3
119,785 + CSW01_00635 0.44 -3.0
119,792 + CSW01_00635 0.45 +0.9
119,793 - CSW01_00635 0.45 -0.0
119,793 - CSW01_00635 0.45 +0.6
119,834 + CSW01_00635 0.48 -3.0
119,839 + CSW01_00635 0.49 -1.4
119,930 + CSW01_00635 0.56 +0.5
119,955 - CSW01_00635 0.58 +0.8
119,956 - CSW01_00635 0.58 -1.8
119,966 - CSW01_00635 0.59 -1.2
119,997 + CSW01_00635 0.61 +0.2
120,004 + CSW01_00635 0.62 -3.1
120,017 + CSW01_00635 0.63 +0.9
120,017 + CSW01_00635 0.63 -0.9
120,183 - CSW01_00635 0.76 +1.2

Or see this region's nucleotide sequence