Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00420 and CSW01_00425 are separated by 75 nucleotides CSW01_00425 and CSW01_00430 are separated by 132 nucleotides CSW01_00430 and CSW01_00435 overlap by 4 nucleotides
CSW01_00420: CSW01_00420 - ferritin, at 76,801 to 77,328
_00420
CSW01_00425: CSW01_00425 - universal stress protein B, at 77,404 to 77,727
_00425
CSW01_00430: CSW01_00430 - NAD(P)/FAD-dependent oxidoreductase, at 77,860 to 79,056
_00430
CSW01_00435: CSW01_00435 - EamA/RhaT family transporter, at 79,053 to 79,964
_00435
Position (kb) 77
78
79
80 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 76.897 kb on + strand, within CSW01_00420 at 76.923 kb on - strand, within CSW01_00420 at 76.931 kb on - strand, within CSW01_00420 at 76.976 kb on - strand, within CSW01_00420 at 77.006 kb on + strand, within CSW01_00420 at 77.049 kb on + strand, within CSW01_00420 at 77.129 kb on + strand, within CSW01_00420 at 77.130 kb on - strand, within CSW01_00420 at 77.137 kb on - strand, within CSW01_00420 at 77.146 kb on + strand, within CSW01_00420 at 77.171 kb on + strand, within CSW01_00420 at 77.179 kb on - strand, within CSW01_00420 at 77.179 kb on - strand, within CSW01_00420 at 77.179 kb on - strand, within CSW01_00420 at 77.181 kb on + strand, within CSW01_00420 at 77.181 kb on + strand, within CSW01_00420 at 77.189 kb on - strand, within CSW01_00420 at 77.219 kb on + strand, within CSW01_00420 at 77.219 kb on + strand, within CSW01_00420 at 77.219 kb on + strand, within CSW01_00420 at 77.219 kb on + strand, within CSW01_00420 at 77.219 kb on + strand, within CSW01_00420 at 77.219 kb on + strand, within CSW01_00420 at 77.219 kb on + strand, within CSW01_00420 at 77.219 kb on + strand, within CSW01_00420 at 77.219 kb on + strand, within CSW01_00420 at 77.227 kb on - strand, within CSW01_00420 at 77.227 kb on - strand, within CSW01_00420 at 77.227 kb on - strand, within CSW01_00420 at 77.387 kb on - strand at 77.395 kb on - strand at 77.429 kb on - strand at 77.474 kb on - strand, within CSW01_00425 at 77.515 kb on - strand, within CSW01_00425 at 77.546 kb on + strand, within CSW01_00425 at 77.565 kb on - strand, within CSW01_00425 at 77.565 kb on - strand, within CSW01_00425 at 77.606 kb on + strand, within CSW01_00425 at 77.614 kb on - strand, within CSW01_00425 at 77.657 kb on + strand, within CSW01_00425 at 77.657 kb on - strand, within CSW01_00425 at 77.695 kb on + strand at 77.697 kb on - strand at 77.703 kb on - strand at 77.703 kb on - strand at 77.781 kb on - strand at 77.816 kb on + strand at 77.823 kb on + strand at 77.824 kb on - strand at 77.824 kb on - strand at 77.866 kb on + strand at 77.879 kb on - strand at 77.914 kb on + strand at 77.914 kb on + strand at 77.914 kb on + strand at 77.927 kb on - strand at 77.932 kb on - strand at 77.932 kb on - strand at 77.954 kb on + strand at 78.067 kb on + strand, within CSW01_00430 at 78.145 kb on + strand, within CSW01_00430 at 78.146 kb on + strand, within CSW01_00430 at 78.146 kb on + strand, within CSW01_00430 at 78.146 kb on + strand, within CSW01_00430 at 78.146 kb on + strand, within CSW01_00430 at 78.146 kb on + strand, within CSW01_00430 at 78.154 kb on - strand, within CSW01_00430 at 78.154 kb on - strand, within CSW01_00430 at 78.154 kb on - strand, within CSW01_00430 at 78.154 kb on - strand, within CSW01_00430 at 78.182 kb on - strand, within CSW01_00430 at 78.182 kb on - strand, within CSW01_00430 at 78.208 kb on + strand, within CSW01_00430 at 78.221 kb on + strand, within CSW01_00430 at 78.228 kb on - strand, within CSW01_00430 at 78.231 kb on + strand, within CSW01_00430 at 78.232 kb on - strand, within CSW01_00430 at 78.259 kb on - strand, within CSW01_00430 at 78.269 kb on + strand, within CSW01_00430 at 78.273 kb on + strand, within CSW01_00430 at 78.277 kb on - strand, within CSW01_00430 at 78.279 kb on - strand, within CSW01_00430 at 78.281 kb on - strand, within CSW01_00430 at 78.290 kb on + strand, within CSW01_00430 at 78.290 kb on + strand, within CSW01_00430 at 78.290 kb on + strand, within CSW01_00430 at 78.298 kb on - strand, within CSW01_00430 at 78.298 kb on - strand, within CSW01_00430 at 78.298 kb on - strand, within CSW01_00430 at 78.339 kb on + strand, within CSW01_00430 at 78.418 kb on + strand, within CSW01_00430 at 78.439 kb on + strand, within CSW01_00430 at 78.439 kb on + strand, within CSW01_00430 at 78.439 kb on + strand, within CSW01_00430 at 78.447 kb on - strand, within CSW01_00430 at 78.470 kb on + strand, within CSW01_00430 at 78.489 kb on + strand, within CSW01_00430 at 78.539 kb on + strand, within CSW01_00430 at 78.550 kb on + strand, within CSW01_00430 at 78.664 kb on + strand, within CSW01_00430 at 78.800 kb on + strand, within CSW01_00430 at 78.800 kb on + strand, within CSW01_00430 at 78.800 kb on + strand, within CSW01_00430 at 78.820 kb on + strand, within CSW01_00430 at 78.820 kb on + strand, within CSW01_00430 at 78.820 kb on + strand, within CSW01_00430 at 78.825 kb on + strand, within CSW01_00430 at 78.828 kb on - strand, within CSW01_00430 at 78.828 kb on - strand, within CSW01_00430 at 78.830 kb on + strand, within CSW01_00430 at 78.830 kb on + strand, within CSW01_00430 at 78.840 kb on + strand, within CSW01_00430 at 78.860 kb on + strand, within CSW01_00430 at 78.860 kb on + strand, within CSW01_00430 at 78.868 kb on - strand, within CSW01_00430 at 78.878 kb on + strand, within CSW01_00430 at 78.878 kb on + strand, within CSW01_00430 at 78.878 kb on + strand, within CSW01_00430 at 78.878 kb on + strand, within CSW01_00430 at 78.886 kb on - strand, within CSW01_00430 at 78.936 kb on + strand, within CSW01_00430 at 78.936 kb on + strand, within CSW01_00430 at 78.952 kb on + strand at 78.952 kb on + strand at 78.960 kb on - strand at 78.960 kb on - strand at 78.960 kb on - strand at 78.986 kb on - strand at 79.000 kb on + strand at 79.001 kb on + strand at 79.059 kb on - strand at 79.059 kb on - strand at 79.077 kb on + strand at 79.104 kb on - strand at 79.130 kb on + strand at 79.130 kb on + strand at 79.130 kb on + strand at 79.130 kb on + strand at 79.130 kb on + strand at 79.130 kb on + strand at 79.130 kb on + strand at 79.130 kb on + strand at 79.130 kb on + strand at 79.130 kb on + strand at 79.130 kb on + strand at 79.138 kb on - strand at 79.138 kb on - strand at 79.138 kb on - strand at 79.138 kb on - strand at 79.138 kb on - strand at 79.138 kb on - strand at 79.163 kb on - strand, within CSW01_00435 at 79.185 kb on - strand, within CSW01_00435 at 79.239 kb on + strand, within CSW01_00435 at 79.242 kb on - strand, within CSW01_00435 at 79.266 kb on - strand, within CSW01_00435 at 79.331 kb on - strand, within CSW01_00435 at 79.360 kb on + strand, within CSW01_00435 at 79.368 kb on - strand, within CSW01_00435 at 79.374 kb on - strand, within CSW01_00435 at 79.410 kb on + strand, within CSW01_00435 at 79.427 kb on - strand, within CSW01_00435 at 79.437 kb on - strand, within CSW01_00435 at 79.462 kb on + strand, within CSW01_00435 at 79.467 kb on + strand, within CSW01_00435 at 79.474 kb on + strand, within CSW01_00435 at 79.475 kb on - strand, within CSW01_00435 at 79.475 kb on - strand, within CSW01_00435 at 79.475 kb on - strand, within CSW01_00435 at 79.482 kb on - strand, within CSW01_00435 at 79.482 kb on - strand, within CSW01_00435 at 79.484 kb on + strand, within CSW01_00435 at 79.490 kb on + strand, within CSW01_00435 at 79.490 kb on + strand, within CSW01_00435 at 79.492 kb on - strand, within CSW01_00435 at 79.498 kb on - strand, within CSW01_00435 at 79.498 kb on - strand, within CSW01_00435 at 79.515 kb on - strand, within CSW01_00435 at 79.609 kb on - strand, within CSW01_00435 at 79.632 kb on + strand, within CSW01_00435 at 79.633 kb on - strand, within CSW01_00435 at 79.639 kb on + strand, within CSW01_00435 at 79.696 kb on + strand, within CSW01_00435 at 79.712 kb on + strand, within CSW01_00435 at 79.720 kb on - strand, within CSW01_00435 at 79.786 kb on + strand, within CSW01_00435 at 79.786 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.792 kb on + strand, within CSW01_00435 at 79.795 kb on - strand, within CSW01_00435 at 79.795 kb on - strand, within CSW01_00435 at 79.800 kb on - strand, within CSW01_00435 at 79.800 kb on - strand, within CSW01_00435 at 79.832 kb on - strand, within CSW01_00435 at 79.868 kb on + strand, within CSW01_00435 at 79.876 kb on - strand at 79.876 kb on - strand at 79.876 kb on - strand at 79.876 kb on - strand at 79.912 kb on + strand at 79.912 kb on + strand at 79.912 kb on + strand at 79.912 kb on + strand at 79.912 kb on + strand at 79.912 kb on + strand at 79.914 kb on - strand at 79.917 kb on + strand at 79.925 kb on - strand at 79.934 kb on + strand at 79.974 kb on + strand at 79.974 kb on + strand at 79.996 kb on + strand at 79.996 kb on + strand at 79.996 kb on + strand at 79.996 kb on + strand at 80.003 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.037 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 76,897 + CSW01_00420 0.18 +0.5 76,923 - CSW01_00420 0.23 +0.1 76,931 - CSW01_00420 0.25 -2.7 76,976 - CSW01_00420 0.33 -0.6 77,006 + CSW01_00420 0.39 +0.9 77,049 + CSW01_00420 0.47 +2.3 77,129 + CSW01_00420 0.62 +2.2 77,130 - CSW01_00420 0.62 -1.5 77,137 - CSW01_00420 0.64 -3.1 77,146 + CSW01_00420 0.65 -1.1 77,171 + CSW01_00420 0.70 +0.6 77,179 - CSW01_00420 0.72 -1.4 77,179 - CSW01_00420 0.72 -3.0 77,179 - CSW01_00420 0.72 +1.1 77,181 + CSW01_00420 0.72 -0.3 77,181 + CSW01_00420 0.72 -0.2 77,189 - CSW01_00420 0.73 +0.0 77,219 + CSW01_00420 0.79 -0.3 77,219 + CSW01_00420 0.79 +0.9 77,219 + CSW01_00420 0.79 -3.2 77,219 + CSW01_00420 0.79 -2.5 77,219 + CSW01_00420 0.79 +1.6 77,219 + CSW01_00420 0.79 +0.7 77,219 + CSW01_00420 0.79 -2.8 77,219 + CSW01_00420 0.79 -4.0 77,219 + CSW01_00420 0.79 -0.1 77,227 - CSW01_00420 0.81 -5.6 77,227 - CSW01_00420 0.81 +0.1 77,227 - CSW01_00420 0.81 +0.5 77,387 - -0.0 77,395 - +0.8 77,429 - -0.9 77,474 - CSW01_00425 0.22 -3.8 77,515 - CSW01_00425 0.34 -1.2 77,546 + CSW01_00425 0.44 -0.4 77,565 - CSW01_00425 0.50 +0.3 77,565 - CSW01_00425 0.50 +0.7 77,606 + CSW01_00425 0.62 -0.0 77,614 - CSW01_00425 0.65 +0.4 77,657 + CSW01_00425 0.78 -0.7 77,657 - CSW01_00425 0.78 +0.8 77,695 + -3.1 77,697 - -1.2 77,703 - -3.7 77,703 - +1.2 77,781 - -3.6 77,816 + +0.5 77,823 + -2.7 77,824 - +1.2 77,824 - -1.4 77,866 + -0.5 77,879 - +2.0 77,914 + +1.1 77,914 + +0.4 77,914 + -3.4 77,927 - +1.4 77,932 - -2.6 77,932 - +0.2 77,954 + -2.8 78,067 + CSW01_00430 0.17 +0.6 78,145 + CSW01_00430 0.24 -2.2 78,146 + CSW01_00430 0.24 -1.1 78,146 + CSW01_00430 0.24 +1.0 78,146 + CSW01_00430 0.24 +0.7 78,146 + CSW01_00430 0.24 -0.3 78,146 + CSW01_00430 0.24 -0.3 78,154 - CSW01_00430 0.25 -0.1 78,154 - CSW01_00430 0.25 -0.7 78,154 - CSW01_00430 0.25 -0.4 78,154 - CSW01_00430 0.25 +0.1 78,182 - CSW01_00430 0.27 +0.3 78,182 - CSW01_00430 0.27 +0.2 78,208 + CSW01_00430 0.29 -0.7 78,221 + CSW01_00430 0.30 +1.9 78,228 - CSW01_00430 0.31 -1.8 78,231 + CSW01_00430 0.31 -4.2 78,232 - CSW01_00430 0.31 -3.0 78,259 - CSW01_00430 0.33 +0.4 78,269 + CSW01_00430 0.34 -0.5 78,273 + CSW01_00430 0.35 -2.2 78,277 - CSW01_00430 0.35 +1.5 78,279 - CSW01_00430 0.35 +0.2 78,281 - CSW01_00430 0.35 -0.3 78,290 + CSW01_00430 0.36 +0.1 78,290 + CSW01_00430 0.36 -2.4 78,290 + CSW01_00430 0.36 +0.6 78,298 - CSW01_00430 0.37 -4.5 78,298 - CSW01_00430 0.37 +1.0 78,298 - CSW01_00430 0.37 +1.0 78,339 + CSW01_00430 0.40 -0.2 78,418 + CSW01_00430 0.47 +1.4 78,439 + CSW01_00430 0.48 -2.0 78,439 + CSW01_00430 0.48 -0.8 78,439 + CSW01_00430 0.48 +0.3 78,447 - CSW01_00430 0.49 +1.5 78,470 + CSW01_00430 0.51 -2.0 78,489 + CSW01_00430 0.53 +1.8 78,539 + CSW01_00430 0.57 +0.5 78,550 + CSW01_00430 0.58 -0.0 78,664 + CSW01_00430 0.67 -1.1 78,800 + CSW01_00430 0.79 +0.8 78,800 + CSW01_00430 0.79 +1.1 78,800 + CSW01_00430 0.79 -0.5 78,820 + CSW01_00430 0.80 -3.2 78,820 + CSW01_00430 0.80 -0.3 78,820 + CSW01_00430 0.80 -0.3 78,825 + CSW01_00430 0.81 +1.5 78,828 - CSW01_00430 0.81 -1.0 78,828 - CSW01_00430 0.81 +1.8 78,830 + CSW01_00430 0.81 -0.0 78,830 + CSW01_00430 0.81 +1.1 78,840 + CSW01_00430 0.82 +2.3 78,860 + CSW01_00430 0.84 -3.7 78,860 + CSW01_00430 0.84 +0.1 78,868 - CSW01_00430 0.84 -1.6 78,878 + CSW01_00430 0.85 +0.9 78,878 + CSW01_00430 0.85 -2.8 78,878 + CSW01_00430 0.85 +0.5 78,878 + CSW01_00430 0.85 +0.3 78,886 - CSW01_00430 0.86 -0.0 78,936 + CSW01_00430 0.90 +0.9 78,936 + CSW01_00430 0.90 +1.3 78,952 + -2.2 78,952 + +1.4 78,960 - -0.3 78,960 - +0.4 78,960 - -2.8 78,986 - -3.7 79,000 + +0.9 79,001 + -3.9 79,059 - +1.4 79,059 - +0.4 79,077 + -0.4 79,104 - -1.9 79,130 + -0.3 79,130 + +0.1 79,130 + -2.8 79,130 + -2.5 79,130 + +0.2 79,130 + +0.2 79,130 + +1.0 79,130 + -0.9 79,130 + +1.8 79,130 + +0.7 79,130 + -0.4 79,138 - +1.0 79,138 - -0.7 79,138 - +1.6 79,138 - +1.2 79,138 - -3.9 79,138 - -4.4 79,163 - CSW01_00435 0.12 +0.3 79,185 - CSW01_00435 0.14 +1.6 79,239 + CSW01_00435 0.20 +2.1 79,242 - CSW01_00435 0.21 -3.7 79,266 - CSW01_00435 0.23 +1.1 79,331 - CSW01_00435 0.30 +0.3 79,360 + CSW01_00435 0.34 -2.8 79,368 - CSW01_00435 0.35 -0.5 79,374 - CSW01_00435 0.35 +0.1 79,410 + CSW01_00435 0.39 -2.3 79,427 - CSW01_00435 0.41 +0.0 79,437 - CSW01_00435 0.42 +0.5 79,462 + CSW01_00435 0.45 -1.0 79,467 + CSW01_00435 0.45 +1.1 79,474 + CSW01_00435 0.46 -0.4 79,475 - CSW01_00435 0.46 -0.2 79,475 - CSW01_00435 0.46 +1.9 79,475 - CSW01_00435 0.46 -3.7 79,482 - CSW01_00435 0.47 +0.4 79,482 - CSW01_00435 0.47 +0.6 79,484 + CSW01_00435 0.47 -3.0 79,490 + CSW01_00435 0.48 +0.9 79,490 + CSW01_00435 0.48 +0.5 79,492 - CSW01_00435 0.48 -4.6 79,498 - CSW01_00435 0.49 +1.3 79,498 - CSW01_00435 0.49 -0.1 79,515 - CSW01_00435 0.51 +1.1 79,609 - CSW01_00435 0.61 +0.9 79,632 + CSW01_00435 0.63 -0.5 79,633 - CSW01_00435 0.64 +1.6 79,639 + CSW01_00435 0.64 +1.8 79,696 + CSW01_00435 0.71 -2.8 79,712 + CSW01_00435 0.72 +0.0 79,720 - CSW01_00435 0.73 +0.4 79,786 + CSW01_00435 0.80 -2.5 79,786 + CSW01_00435 0.80 -0.3 79,787 + CSW01_00435 0.80 +1.8 79,787 + CSW01_00435 0.80 -0.3 79,787 + CSW01_00435 0.80 +1.7 79,787 + CSW01_00435 0.80 -2.0 79,787 + CSW01_00435 0.80 -2.1 79,787 + CSW01_00435 0.80 -2.7 79,787 + CSW01_00435 0.80 +0.6 79,787 + CSW01_00435 0.80 +0.4 79,787 + CSW01_00435 0.80 -2.8 79,787 + CSW01_00435 0.80 +0.7 79,787 + CSW01_00435 0.80 -1.3 79,787 + CSW01_00435 0.80 +0.6 79,787 + CSW01_00435 0.80 +0.4 79,792 + CSW01_00435 0.81 +0.6 79,795 - CSW01_00435 0.81 -4.4 79,795 - CSW01_00435 0.81 -4.7 79,800 - CSW01_00435 0.82 -2.8 79,800 - CSW01_00435 0.82 -2.1 79,832 - CSW01_00435 0.85 +1.2 79,868 + CSW01_00435 0.89 +0.8 79,876 - -3.5 79,876 - +1.8 79,876 - +0.8 79,876 - -1.0 79,912 + +0.9 79,912 + -0.7 79,912 + +0.9 79,912 + -0.4 79,912 + +0.2 79,912 + -0.0 79,914 - -1.2 79,917 + -2.6 79,925 - +0.2 79,934 + -2.6 79,974 + -3.7 79,974 + -2.2 79,996 + +0.6 79,996 + -0.5 79,996 + -0.8 79,996 + +0.2 80,003 - -1.9 80,004 - +0.2 80,004 - +2.2 80,004 - -3.0 80,037 - +0.6
Or see this region's nucleotide sequence