Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00175

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00165 and CSW01_00170 are separated by 77 nucleotidesCSW01_00170 and CSW01_00175 are separated by 30 nucleotidesCSW01_00175 and CSW01_00180 are separated by 47 nucleotides CSW01_00165: CSW01_00165 - acyltransferase, at 31,682 to 32,566 _00165 CSW01_00170: CSW01_00170 - thiol:disulfide interchange protein DsbA, at 32,644 to 33,246 _00170 CSW01_00175: CSW01_00175 - serine/threonine protein kinase, at 33,277 to 34,263 _00175 CSW01_00180: CSW01_00180 - cytochrome c oxidase accessory protein CcoG, at 34,311 to 35,735 _00180 Position (kb) 33 34 35Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 32.286 kb on - strand, within CSW01_00165at 32.324 kb on - strand, within CSW01_00165at 32.348 kb on + strand, within CSW01_00165at 32.358 kb on + strand, within CSW01_00165at 32.375 kb on - strand, within CSW01_00165at 32.400 kb on + strand, within CSW01_00165at 32.400 kb on + strand, within CSW01_00165at 32.400 kb on + strand, within CSW01_00165at 32.400 kb on + strand, within CSW01_00165at 32.400 kb on + strand, within CSW01_00165at 32.400 kb on + strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.417 kb on + strand, within CSW01_00165at 32.452 kb on + strand, within CSW01_00165at 32.480 kb on - strandat 32.490 kb on - strandat 32.509 kb on + strandat 32.514 kb on + strandat 32.514 kb on + strandat 32.522 kb on - strandat 32.531 kb on + strandat 32.531 kb on + strandat 32.532 kb on - strandat 32.532 kb on - strandat 32.592 kb on - strandat 32.637 kb on + strandat 32.702 kb on + strandat 32.815 kb on + strand, within CSW01_00170at 32.894 kb on + strand, within CSW01_00170at 32.894 kb on + strand, within CSW01_00170at 32.894 kb on + strand, within CSW01_00170at 32.904 kb on + strand, within CSW01_00170at 32.906 kb on + strand, within CSW01_00170at 32.906 kb on + strand, within CSW01_00170at 32.906 kb on + strand, within CSW01_00170at 32.906 kb on + strand, within CSW01_00170at 32.906 kb on + strand, within CSW01_00170at 32.907 kb on - strand, within CSW01_00170at 32.914 kb on - strand, within CSW01_00170at 33.006 kb on - strand, within CSW01_00170at 33.078 kb on + strand, within CSW01_00170at 33.086 kb on + strand, within CSW01_00170at 33.086 kb on + strand, within CSW01_00170at 33.086 kb on - strand, within CSW01_00170at 33.086 kb on - strand, within CSW01_00170at 33.086 kb on - strand, within CSW01_00170at 33.094 kb on - strand, within CSW01_00170at 33.098 kb on + strand, within CSW01_00170at 33.145 kb on - strand, within CSW01_00170at 33.189 kb on - strandat 33.196 kb on + strandat 33.204 kb on - strandat 33.211 kb on + strandat 33.218 kb on + strandat 33.218 kb on + strandat 33.219 kb on - strandat 33.269 kb on + strandat 33.275 kb on + strandat 33.317 kb on + strandat 33.330 kb on + strandat 33.330 kb on - strandat 33.405 kb on - strand, within CSW01_00175at 33.433 kb on + strand, within CSW01_00175at 33.433 kb on + strand, within CSW01_00175at 33.433 kb on + strand, within CSW01_00175at 33.433 kb on + strand, within CSW01_00175at 33.488 kb on - strand, within CSW01_00175at 33.501 kb on + strand, within CSW01_00175at 33.587 kb on + strand, within CSW01_00175at 33.676 kb on + strand, within CSW01_00175at 33.684 kb on - strand, within CSW01_00175at 33.703 kb on - strand, within CSW01_00175at 33.703 kb on - strand, within CSW01_00175at 33.772 kb on - strand, within CSW01_00175at 33.776 kb on + strand, within CSW01_00175at 33.808 kb on + strand, within CSW01_00175at 33.844 kb on + strand, within CSW01_00175at 33.844 kb on + strand, within CSW01_00175at 33.844 kb on + strand, within CSW01_00175at 33.895 kb on + strand, within CSW01_00175at 33.895 kb on + strand, within CSW01_00175at 33.903 kb on - strand, within CSW01_00175at 33.903 kb on - strand, within CSW01_00175at 33.903 kb on - strand, within CSW01_00175at 33.941 kb on + strand, within CSW01_00175at 33.951 kb on + strand, within CSW01_00175at 33.975 kb on + strand, within CSW01_00175at 33.976 kb on + strand, within CSW01_00175at 33.976 kb on + strand, within CSW01_00175at 33.983 kb on - strand, within CSW01_00175at 33.984 kb on - strand, within CSW01_00175at 33.984 kb on - strand, within CSW01_00175at 33.989 kb on - strand, within CSW01_00175at 33.997 kb on - strand, within CSW01_00175at 34.023 kb on + strand, within CSW01_00175at 34.029 kb on - strand, within CSW01_00175at 34.048 kb on + strand, within CSW01_00175at 34.056 kb on - strand, within CSW01_00175at 34.058 kb on + strand, within CSW01_00175at 34.066 kb on - strand, within CSW01_00175at 34.066 kb on - strand, within CSW01_00175at 34.083 kb on - strand, within CSW01_00175at 34.084 kb on - strand, within CSW01_00175at 34.084 kb on - strand, within CSW01_00175at 34.130 kb on - strand, within CSW01_00175at 34.182 kb on - strandat 34.257 kb on + strandat 34.296 kb on - strandat 34.308 kb on + strandat 34.354 kb on - strandat 34.373 kb on + strandat 34.373 kb on + strandat 34.440 kb on + strandat 34.517 kb on + strand, within CSW01_00180at 34.517 kb on + strand, within CSW01_00180at 34.525 kb on - strand, within CSW01_00180at 34.525 kb on - strand, within CSW01_00180at 34.533 kb on - strand, within CSW01_00180at 34.594 kb on + strand, within CSW01_00180at 34.612 kb on - strand, within CSW01_00180at 34.626 kb on + strand, within CSW01_00180at 34.702 kb on - strand, within CSW01_00180at 34.702 kb on - strand, within CSW01_00180at 34.751 kb on + strand, within CSW01_00180at 34.751 kb on + strand, within CSW01_00180at 34.751 kb on + strand, within CSW01_00180at 34.759 kb on - strand, within CSW01_00180at 34.767 kb on + strand, within CSW01_00180at 34.785 kb on + strand, within CSW01_00180at 34.785 kb on + strand, within CSW01_00180at 34.793 kb on - strand, within CSW01_00180at 34.814 kb on + strand, within CSW01_00180at 34.822 kb on - strand, within CSW01_00180at 34.822 kb on - strand, within CSW01_00180at 34.850 kb on - strand, within CSW01_00180at 34.884 kb on + strand, within CSW01_00180at 34.892 kb on - strand, within CSW01_00180at 34.916 kb on + strand, within CSW01_00180at 34.916 kb on + strand, within CSW01_00180at 34.916 kb on + strand, within CSW01_00180at 34.924 kb on - strand, within CSW01_00180at 34.963 kb on + strand, within CSW01_00180at 35.001 kb on + strand, within CSW01_00180at 35.013 kb on + strand, within CSW01_00180at 35.031 kb on - strand, within CSW01_00180at 35.046 kb on + strand, within CSW01_00180at 35.046 kb on + strand, within CSW01_00180at 35.054 kb on - strand, within CSW01_00180at 35.070 kb on + strand, within CSW01_00180at 35.070 kb on + strand, within CSW01_00180at 35.074 kb on - strand, within CSW01_00180at 35.078 kb on - strand, within CSW01_00180at 35.088 kb on - strand, within CSW01_00180at 35.088 kb on - strand, within CSW01_00180at 35.125 kb on + strand, within CSW01_00180at 35.162 kb on + strand, within CSW01_00180at 35.244 kb on + strand, within CSW01_00180at 35.245 kb on - strand, within CSW01_00180at 35.245 kb on - strand, within CSW01_00180at 35.245 kb on - strand, within CSW01_00180at 35.245 kb on - strand, within CSW01_00180

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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32,286 - CSW01_00165 0.68 +1.1
32,324 - CSW01_00165 0.73 +1.1
32,348 + CSW01_00165 0.75 -1.5
32,358 + CSW01_00165 0.76 -2.3
32,375 - CSW01_00165 0.78 +0.3
32,400 + CSW01_00165 0.81 +0.8
32,400 + CSW01_00165 0.81 +1.2
32,400 + CSW01_00165 0.81 -0.8
32,400 + CSW01_00165 0.81 +0.5
32,400 + CSW01_00165 0.81 +1.2
32,400 + CSW01_00165 0.81 -0.1
32,408 - CSW01_00165 0.82 +2.3
32,408 - CSW01_00165 0.82 -2.8
32,408 - CSW01_00165 0.82 -0.2
32,408 - CSW01_00165 0.82 -0.5
32,408 - CSW01_00165 0.82 +0.6
32,408 - CSW01_00165 0.82 -0.1
32,408 - CSW01_00165 0.82 -1.3
32,417 + CSW01_00165 0.83 +0.6
32,452 + CSW01_00165 0.87 -0.8
32,480 - +0.3
32,490 - -0.2
32,509 + -2.7
32,514 + -3.3
32,514 + +1.1
32,522 - -2.9
32,531 + +0.0
32,531 + +0.0
32,532 - -2.3
32,532 - -2.4
32,592 - -0.4
32,637 + +0.2
32,702 + -2.8
32,815 + CSW01_00170 0.28 -4.7
32,894 + CSW01_00170 0.41 -0.7
32,894 + CSW01_00170 0.41 -0.6
32,894 + CSW01_00170 0.41 -4.1
32,904 + CSW01_00170 0.43 +1.0
32,906 + CSW01_00170 0.43 -3.4
32,906 + CSW01_00170 0.43 -0.5
32,906 + CSW01_00170 0.43 +1.2
32,906 + CSW01_00170 0.43 -2.4
32,906 + CSW01_00170 0.43 -2.6
32,907 - CSW01_00170 0.44 -1.9
32,914 - CSW01_00170 0.45 -2.7
33,006 - CSW01_00170 0.60 -1.4
33,078 + CSW01_00170 0.72 +1.5
33,086 + CSW01_00170 0.73 -2.7
33,086 + CSW01_00170 0.73 -3.9
33,086 - CSW01_00170 0.73 -1.3
33,086 - CSW01_00170 0.73 -5.0
33,086 - CSW01_00170 0.73 -4.3
33,094 - CSW01_00170 0.75 -3.5
33,098 + CSW01_00170 0.75 +0.3
33,145 - CSW01_00170 0.83 -2.8
33,189 - +0.8
33,196 + -1.2
33,204 - -4.2
33,211 + -3.7
33,218 + +0.5
33,218 + -3.9
33,219 - -4.0
33,269 + +0.3
33,275 + +0.3
33,317 + +1.1
33,330 + -3.5
33,330 - +1.0
33,405 - CSW01_00175 0.13 -4.2
33,433 + CSW01_00175 0.16 +0.1
33,433 + CSW01_00175 0.16 +0.6
33,433 + CSW01_00175 0.16 -2.1
33,433 + CSW01_00175 0.16 -0.5
33,488 - CSW01_00175 0.21 -1.9
33,501 + CSW01_00175 0.23 -2.9
33,587 + CSW01_00175 0.31 -3.7
33,676 + CSW01_00175 0.40 -0.8
33,684 - CSW01_00175 0.41 -0.4
33,703 - CSW01_00175 0.43 +0.9
33,703 - CSW01_00175 0.43 -0.7
33,772 - CSW01_00175 0.50 +0.4
33,776 + CSW01_00175 0.51 -3.1
33,808 + CSW01_00175 0.54 +1.6
33,844 + CSW01_00175 0.57 +0.3
33,844 + CSW01_00175 0.57 +0.9
33,844 + CSW01_00175 0.57 +1.3
33,895 + CSW01_00175 0.63 +1.1
33,895 + CSW01_00175 0.63 +1.5
33,903 - CSW01_00175 0.63 -0.4
33,903 - CSW01_00175 0.63 -1.2
33,903 - CSW01_00175 0.63 +0.4
33,941 + CSW01_00175 0.67 -2.1
33,951 + CSW01_00175 0.68 +0.8
33,975 + CSW01_00175 0.71 -2.7
33,976 + CSW01_00175 0.71 -1.2
33,976 + CSW01_00175 0.71 -2.4
33,983 - CSW01_00175 0.72 -0.5
33,984 - CSW01_00175 0.72 -2.5
33,984 - CSW01_00175 0.72 +1.7
33,989 - CSW01_00175 0.72 -1.2
33,997 - CSW01_00175 0.73 -3.2
34,023 + CSW01_00175 0.76 +1.2
34,029 - CSW01_00175 0.76 +2.1
34,048 + CSW01_00175 0.78 +0.6
34,056 - CSW01_00175 0.79 -0.8
34,058 + CSW01_00175 0.79 +0.0
34,066 - CSW01_00175 0.80 -0.6
34,066 - CSW01_00175 0.80 -1.5
34,083 - CSW01_00175 0.82 -1.9
34,084 - CSW01_00175 0.82 +0.7
34,084 - CSW01_00175 0.82 +0.5
34,130 - CSW01_00175 0.86 -3.7
34,182 - -0.5
34,257 + -1.1
34,296 - -1.0
34,308 + +0.6
34,354 - -2.5
34,373 + -4.2
34,373 + -3.5
34,440 + -1.5
34,517 + CSW01_00180 0.14 -3.3
34,517 + CSW01_00180 0.14 +0.2
34,525 - CSW01_00180 0.15 -0.8
34,525 - CSW01_00180 0.15 -2.8
34,533 - CSW01_00180 0.16 +0.7
34,594 + CSW01_00180 0.20 -2.1
34,612 - CSW01_00180 0.21 -1.4
34,626 + CSW01_00180 0.22 -4.1
34,702 - CSW01_00180 0.27 -1.8
34,702 - CSW01_00180 0.27 -3.1
34,751 + CSW01_00180 0.31 +1.2
34,751 + CSW01_00180 0.31 -2.3
34,751 + CSW01_00180 0.31 -2.2
34,759 - CSW01_00180 0.31 -1.2
34,767 + CSW01_00180 0.32 -0.7
34,785 + CSW01_00180 0.33 +1.7
34,785 + CSW01_00180 0.33 -2.8
34,793 - CSW01_00180 0.34 -1.0
34,814 + CSW01_00180 0.35 -4.0
34,822 - CSW01_00180 0.36 +1.6
34,822 - CSW01_00180 0.36 -0.3
34,850 - CSW01_00180 0.38 -2.2
34,884 + CSW01_00180 0.40 -0.6
34,892 - CSW01_00180 0.41 +0.0
34,916 + CSW01_00180 0.42 -2.0
34,916 + CSW01_00180 0.42 -0.2
34,916 + CSW01_00180 0.42 +1.8
34,924 - CSW01_00180 0.43 -2.7
34,963 + CSW01_00180 0.46 +0.3
35,001 + CSW01_00180 0.48 -0.2
35,013 + CSW01_00180 0.49 +1.5
35,031 - CSW01_00180 0.51 -3.1
35,046 + CSW01_00180 0.52 +0.2
35,046 + CSW01_00180 0.52 +0.3
35,054 - CSW01_00180 0.52 -0.0
35,070 + CSW01_00180 0.53 +1.2
35,070 + CSW01_00180 0.53 +1.8
35,074 - CSW01_00180 0.54 -0.4
35,078 - CSW01_00180 0.54 -3.4
35,088 - CSW01_00180 0.55 -2.6
35,088 - CSW01_00180 0.55 -4.1
35,125 + CSW01_00180 0.57 +0.3
35,162 + CSW01_00180 0.60 +2.6
35,244 + CSW01_00180 0.65 -0.0
35,245 - CSW01_00180 0.66 -0.8
35,245 - CSW01_00180 0.66 +1.4
35,245 - CSW01_00180 0.66 -0.2
35,245 - CSW01_00180 0.66 -1.0

Or see this region's nucleotide sequence