Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00090 and CSW01_00095 are separated by 188 nucleotides CSW01_00095 and CSW01_00100 overlap by 59 nucleotides
CSW01_00090: CSW01_00090 - valine--pyruvate transaminase, at 15,294 to 16,550
_00090
CSW01_00095: CSW01_00095 - hypothetical protein, at 16,739 to 16,927
_00095
CSW01_00100: CSW01_00100 - glycine--tRNA ligase subunit beta, at 16,869 to 18,935
_00100
Position (kb) 16
17 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 15.743 kb on + strand, within CSW01_00090 at 15.743 kb on + strand, within CSW01_00090 at 15.751 kb on - strand, within CSW01_00090 at 15.788 kb on + strand, within CSW01_00090 at 15.802 kb on + strand, within CSW01_00090 at 15.832 kb on - strand, within CSW01_00090 at 15.856 kb on - strand, within CSW01_00090 at 15.916 kb on + strand, within CSW01_00090 at 15.918 kb on + strand, within CSW01_00090 at 15.924 kb on - strand, within CSW01_00090 at 15.961 kb on + strand, within CSW01_00090 at 16.039 kb on - strand, within CSW01_00090 at 16.061 kb on + strand, within CSW01_00090 at 16.061 kb on + strand, within CSW01_00090 at 16.061 kb on + strand, within CSW01_00090 at 16.069 kb on - strand, within CSW01_00090 at 16.069 kb on - strand, within CSW01_00090 at 16.069 kb on - strand, within CSW01_00090 at 16.069 kb on - strand, within CSW01_00090 at 16.180 kb on + strand, within CSW01_00090 at 16.180 kb on + strand, within CSW01_00090 at 16.290 kb on + strand, within CSW01_00090 at 16.292 kb on + strand, within CSW01_00090 at 16.319 kb on + strand, within CSW01_00090 at 16.321 kb on + strand, within CSW01_00090 at 16.321 kb on + strand, within CSW01_00090 at 16.329 kb on - strand, within CSW01_00090 at 16.329 kb on - strand, within CSW01_00090 at 16.329 kb on - strand, within CSW01_00090 at 16.347 kb on + strand, within CSW01_00090 at 16.354 kb on + strand, within CSW01_00090 at 16.354 kb on + strand, within CSW01_00090 at 16.362 kb on - strand, within CSW01_00090 at 16.440 kb on - strand at 16.440 kb on - strand at 16.457 kb on + strand at 16.457 kb on + strand at 16.457 kb on + strand at 16.457 kb on + strand at 16.457 kb on + strand at 16.465 kb on - strand at 16.465 kb on - strand at 16.465 kb on - strand at 16.465 kb on - strand at 16.467 kb on + strand at 16.475 kb on - strand at 16.475 kb on - strand at 16.475 kb on - strand at 16.537 kb on + strand at 16.596 kb on - strand at 16.635 kb on + strand at 16.794 kb on - strand, within CSW01_00095 at 16.829 kb on - strand, within CSW01_00095 at 16.829 kb on - strand, within CSW01_00095
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 15,743 + CSW01_00090 0.36 +0.7 15,743 + CSW01_00090 0.36 -3.3 15,751 - CSW01_00090 0.36 -2.6 15,788 + CSW01_00090 0.39 +0.2 15,802 + CSW01_00090 0.40 -0.8 15,832 - CSW01_00090 0.43 -1.0 15,856 - CSW01_00090 0.45 -2.1 15,916 + CSW01_00090 0.49 +0.2 15,918 + CSW01_00090 0.50 +0.0 15,924 - CSW01_00090 0.50 +1.3 15,961 + CSW01_00090 0.53 -2.5 16,039 - CSW01_00090 0.59 -0.8 16,061 + CSW01_00090 0.61 +1.4 16,061 + CSW01_00090 0.61 +1.7 16,061 + CSW01_00090 0.61 -1.4 16,069 - CSW01_00090 0.62 -0.4 16,069 - CSW01_00090 0.62 +0.4 16,069 - CSW01_00090 0.62 +0.8 16,069 - CSW01_00090 0.62 -0.1 16,180 + CSW01_00090 0.70 +2.2 16,180 + CSW01_00090 0.70 +0.9 16,290 + CSW01_00090 0.79 +1.0 16,292 + CSW01_00090 0.79 +0.6 16,319 + CSW01_00090 0.82 -2.0 16,321 + CSW01_00090 0.82 +1.2 16,321 + CSW01_00090 0.82 -0.2 16,329 - CSW01_00090 0.82 -0.3 16,329 - CSW01_00090 0.82 +0.6 16,329 - CSW01_00090 0.82 -1.2 16,347 + CSW01_00090 0.84 -0.2 16,354 + CSW01_00090 0.84 -0.1 16,354 + CSW01_00090 0.84 +0.6 16,362 - CSW01_00090 0.85 +0.8 16,440 - -1.3 16,440 - +0.4 16,457 + +1.4 16,457 + -0.6 16,457 + +0.1 16,457 + +0.4 16,457 + +0.9 16,465 - +0.1 16,465 - -0.0 16,465 - +0.0 16,465 - -3.4 16,467 + -0.3 16,475 - -0.8 16,475 - -4.6 16,475 - -4.3 16,537 + -0.3 16,596 - -0.4 16,635 + +0.7 16,794 - CSW01_00095 0.29 -1.4 16,829 - CSW01_00095 0.48 -1.4 16,829 - CSW01_00095 0.48 -1.9
Or see this region's nucleotide sequence