Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24520

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24510 and BWI76_RS24515 are separated by 9 nucleotidesBWI76_RS24515 and BWI76_RS24520 are separated by 0 nucleotidesBWI76_RS24520 and BWI76_RS24525 are separated by 8 nucleotidesBWI76_RS24525 and BWI76_RS24530 are separated by 151 nucleotides BWI76_RS24510: BWI76_RS24510 - urease subunit alpha, at 5,109,639 to 5,111,342 _RS24510 BWI76_RS24515: BWI76_RS24515 - urease accessory protein UreE, at 5,111,352 to 5,111,822 _RS24515 BWI76_RS24520: BWI76_RS24520 - urease accessory protein UreF, at 5,111,823 to 5,112,497 _RS24520 BWI76_RS24525: BWI76_RS24525 - urease accessory protein UreG, at 5,112,506 to 5,113,123 _RS24525 BWI76_RS24530: BWI76_RS24530 - cytosine/purines uracil thiamine allantoin permease, at 5,113,275 to 5,114,882 _RS24530 Position (kb) 5111 5112 5113Strain fitness (log2 ratio) -1 0 1 2 3at 5110.837 kb on - strand, within BWI76_RS24510at 5110.841 kb on + strand, within BWI76_RS24510at 5110.883 kb on + strand, within BWI76_RS24510at 5111.026 kb on + strand, within BWI76_RS24510at 5111.049 kb on + strand, within BWI76_RS24510at 5111.100 kb on + strand, within BWI76_RS24510at 5111.154 kb on + strand, within BWI76_RS24510at 5111.162 kb on - strand, within BWI76_RS24510at 5111.265 kb on - strandat 5111.344 kb on - strandat 5111.401 kb on + strand, within BWI76_RS24515at 5111.401 kb on + strand, within BWI76_RS24515at 5111.409 kb on - strand, within BWI76_RS24515at 5111.577 kb on + strand, within BWI76_RS24515at 5111.604 kb on - strand, within BWI76_RS24515at 5111.617 kb on + strand, within BWI76_RS24515at 5111.617 kb on + strand, within BWI76_RS24515at 5111.794 kb on + strandat 5111.940 kb on - strand, within BWI76_RS24520at 5112.028 kb on - strand, within BWI76_RS24520at 5112.135 kb on + strand, within BWI76_RS24520at 5112.143 kb on - strand, within BWI76_RS24520at 5112.392 kb on - strand, within BWI76_RS24520at 5112.511 kb on - strandat 5112.582 kb on - strand, within BWI76_RS24525at 5112.586 kb on + strand, within BWI76_RS24525at 5112.594 kb on - strand, within BWI76_RS24525at 5112.687 kb on - strand, within BWI76_RS24525at 5112.857 kb on - strand, within BWI76_RS24525at 5113.124 kb on + strandat 5113.124 kb on + strandat 5113.140 kb on + strandat 5113.140 kb on + strandat 5113.234 kb on - strandat 5113.241 kb on + strandat 5113.313 kb on + strandat 5113.329 kb on - strandat 5113.348 kb on + strandat 5113.356 kb on - strandat 5113.392 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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5,110,837 - BWI76_RS24510 0.70 +0.1
5,110,841 + BWI76_RS24510 0.71 -0.6
5,110,883 + BWI76_RS24510 0.73 -0.4
5,111,026 + BWI76_RS24510 0.81 +0.6
5,111,049 + BWI76_RS24510 0.83 -0.2
5,111,100 + BWI76_RS24510 0.86 -0.3
5,111,154 + BWI76_RS24510 0.89 +1.7
5,111,162 - BWI76_RS24510 0.89 -0.1
5,111,265 - +1.8
5,111,344 - -0.2
5,111,401 + BWI76_RS24515 0.10 +0.1
5,111,401 + BWI76_RS24515 0.10 -0.1
5,111,409 - BWI76_RS24515 0.12 -0.9
5,111,577 + BWI76_RS24515 0.48 -0.9
5,111,604 - BWI76_RS24515 0.54 +0.9
5,111,617 + BWI76_RS24515 0.56 +0.0
5,111,617 + BWI76_RS24515 0.56 +0.8
5,111,794 + -0.3
5,111,940 - BWI76_RS24520 0.17 +0.8
5,112,028 - BWI76_RS24520 0.30 +0.4
5,112,135 + BWI76_RS24520 0.46 +0.8
5,112,143 - BWI76_RS24520 0.47 +0.1
5,112,392 - BWI76_RS24520 0.84 +1.1
5,112,511 - -1.3
5,112,582 - BWI76_RS24525 0.12 +0.7
5,112,586 + BWI76_RS24525 0.13 +0.5
5,112,594 - BWI76_RS24525 0.14 +0.2
5,112,687 - BWI76_RS24525 0.29 +0.6
5,112,857 - BWI76_RS24525 0.57 -0.4
5,113,124 + -0.8
5,113,124 + -1.0
5,113,140 + +0.0
5,113,140 + +0.3
5,113,234 - +1.1
5,113,241 + -0.4
5,113,313 + +3.1
5,113,329 - -0.9
5,113,348 + -0.6
5,113,356 - -0.0
5,113,392 - +0.2

Or see this region's nucleotide sequence