Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14680

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14670 and BWI76_RS14675 overlap by 86 nucleotidesBWI76_RS14675 and BWI76_RS14680 are separated by 12 nucleotidesBWI76_RS14680 and BWI76_RS14685 overlap by 1 nucleotidesBWI76_RS14685 and BWI76_RS14690 are separated by 32 nucleotides BWI76_RS14670: BWI76_RS14670 - hypothetical protein, at 3,081,092 to 3,081,697 _RS14670 BWI76_RS14675: BWI76_RS14675 - fimbrial chaperone YfcS, at 3,081,612 to 3,082,364 _RS14675 BWI76_RS14680: BWI76_RS14680 - SefF, at 3,082,377 to 3,082,901 _RS14680 BWI76_RS14685: BWI76_RS14685 - fimbrial protein, at 3,082,901 to 3,083,494 _RS14685 BWI76_RS14690: BWI76_RS14690 - SefD, at 3,083,527 to 3,084,261 _RS14690 Position (kb) 3082 3083Strain fitness (log2 ratio) -1 0 1at 3081.736 kb on - strand, within BWI76_RS14675at 3081.752 kb on - strand, within BWI76_RS14675at 3081.752 kb on - strand, within BWI76_RS14675at 3081.865 kb on + strand, within BWI76_RS14675at 3081.935 kb on + strandat 3082.639 kb on - strand, within BWI76_RS14680at 3082.708 kb on - strand, within BWI76_RS14680at 3082.828 kb on - strand, within BWI76_RS14680at 3082.871 kb on + strandat 3082.924 kb on + strandat 3083.280 kb on + strand, within BWI76_RS14685at 3083.512 kb on - strandat 3083.712 kb on + strand, within BWI76_RS14690at 3083.894 kb on - strand, within BWI76_RS14690

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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3,081,736 - BWI76_RS14675 0.16 +0.4
3,081,752 - BWI76_RS14675 0.19 -0.2
3,081,752 - BWI76_RS14675 0.19 -0.1
3,081,865 + BWI76_RS14675 0.34 -0.1
3,081,935 + +0.7
3,082,639 - BWI76_RS14680 0.50 -1.2
3,082,708 - BWI76_RS14680 0.63 -0.4
3,082,828 - BWI76_RS14680 0.86 -0.6
3,082,871 + -0.1
3,082,924 + +0.7
3,083,280 + BWI76_RS14685 0.64 -1.3
3,083,512 - +0.1
3,083,712 + BWI76_RS14690 0.25 -0.0
3,083,894 - BWI76_RS14690 0.50 -0.3

Or see this region's nucleotide sequence