Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05810

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05795 and BWI76_RS05800 overlap by 4 nucleotidesBWI76_RS05800 and BWI76_RS05805 are separated by 17 nucleotidesBWI76_RS05805 and BWI76_RS05810 overlap by 37 nucleotidesBWI76_RS05810 and BWI76_RS05815 are separated by 361 nucleotides BWI76_RS05795: BWI76_RS05795 - hypothetical protein, at 1,218,815 to 1,219,552 _RS05795 BWI76_RS05800: BWI76_RS05800 - phage transcriptional activator, Ogr/delta, at 1,219,549 to 1,219,794 _RS05800 BWI76_RS05805: BWI76_RS05805 - phage polarity suppression protein, at 1,219,812 to 1,220,378 _RS05805 BWI76_RS05810: BWI76_RS05810 - hypothetical protein, at 1,220,342 to 1,220,527 _RS05810 BWI76_RS05815: BWI76_RS05815 - hypothetical protein, at 1,220,889 to 1,221,542 _RS05815 Position (kb) 1220 1221Strain fitness (log2 ratio) -2 -1 0 1 2at 1219.380 kb on + strand, within BWI76_RS05795at 1219.532 kb on - strandat 1219.752 kb on + strand, within BWI76_RS05800at 1219.947 kb on - strand, within BWI76_RS05805at 1219.965 kb on - strand, within BWI76_RS05805at 1219.980 kb on - strand, within BWI76_RS05805at 1219.996 kb on + strand, within BWI76_RS05805at 1220.092 kb on + strand, within BWI76_RS05805at 1220.105 kb on - strand, within BWI76_RS05805at 1220.161 kb on + strand, within BWI76_RS05805at 1220.166 kb on + strand, within BWI76_RS05805at 1220.166 kb on + strand, within BWI76_RS05805at 1220.166 kb on + strand, within BWI76_RS05805at 1220.213 kb on + strand, within BWI76_RS05805at 1220.221 kb on - strand, within BWI76_RS05805at 1220.361 kb on + strandat 1220.432 kb on - strand, within BWI76_RS05810at 1220.628 kb on + strandat 1220.638 kb on + strandat 1220.638 kb on + strandat 1220.656 kb on + strandat 1220.656 kb on + strandat 1220.664 kb on - strandat 1220.672 kb on + strandat 1220.672 kb on + strandat 1220.672 kb on + strandat 1220.677 kb on + strandat 1220.677 kb on + strandat 1220.734 kb on - strandat 1220.774 kb on + strandat 1220.783 kb on + strandat 1220.791 kb on - strandat 1220.796 kb on + strandat 1220.806 kb on + strandat 1220.814 kb on - strandat 1220.818 kb on + strandat 1220.818 kb on + strandat 1220.819 kb on + strandat 1220.819 kb on + strandat 1220.819 kb on + strandat 1220.819 kb on + strandat 1220.829 kb on + strandat 1220.829 kb on + strandat 1220.829 kb on + strandat 1220.829 kb on + strandat 1220.829 kb on + strandat 1220.829 kb on + strandat 1220.829 kb on + strandat 1220.829 kb on + strandat 1220.830 kb on + strandat 1220.830 kb on + strandat 1220.830 kb on + strandat 1220.831 kb on + strandat 1220.837 kb on - strandat 1220.837 kb on - strandat 1220.837 kb on - strandat 1220.837 kb on - strandat 1220.837 kb on - strandat 1220.838 kb on - strandat 1220.838 kb on - strandat 1220.838 kb on - strandat 1220.838 kb on - strandat 1220.838 kb on - strandat 1220.839 kb on - strandat 1220.839 kb on - strandat 1220.841 kb on + strandat 1220.841 kb on + strandat 1220.855 kb on + strandat 1220.855 kb on + strandat 1220.856 kb on + strandat 1220.856 kb on + strandat 1220.856 kb on + strandat 1220.856 kb on + strandat 1220.863 kb on - strandat 1220.863 kb on - strandat 1220.864 kb on - strandat 1220.865 kb on + strandat 1220.865 kb on + strandat 1220.865 kb on + strandat 1220.865 kb on + strandat 1220.865 kb on + strandat 1220.867 kb on + strandat 1220.869 kb on + strandat 1220.871 kb on - strandat 1220.873 kb on - strandat 1220.873 kb on - strandat 1220.873 kb on - strandat 1220.873 kb on - strandat 1220.875 kb on + strandat 1220.875 kb on - strandat 1220.875 kb on - strandat 1220.875 kb on - strandat 1220.875 kb on - strandat 1220.875 kb on - strandat 1220.883 kb on - strandat 1220.930 kb on + strandat 1220.930 kb on + strandat 1220.935 kb on + strandat 1220.938 kb on - strandat 1220.938 kb on - strandat 1220.938 kb on - strandat 1220.941 kb on - strandat 1220.964 kb on + strand, within BWI76_RS05815at 1220.966 kb on + strand, within BWI76_RS05815at 1220.974 kb on - strand, within BWI76_RS05815at 1220.976 kb on + strand, within BWI76_RS05815at 1220.976 kb on + strand, within BWI76_RS05815at 1220.976 kb on + strand, within BWI76_RS05815at 1220.984 kb on - strand, within BWI76_RS05815at 1220.991 kb on + strand, within BWI76_RS05815at 1221.021 kb on + strand, within BWI76_RS05815at 1221.023 kb on + strand, within BWI76_RS05815at 1221.028 kb on + strand, within BWI76_RS05815at 1221.028 kb on + strand, within BWI76_RS05815at 1221.028 kb on + strand, within BWI76_RS05815at 1221.028 kb on + strand, within BWI76_RS05815at 1221.028 kb on + strand, within BWI76_RS05815at 1221.029 kb on - strand, within BWI76_RS05815at 1221.029 kb on - strand, within BWI76_RS05815at 1221.029 kb on - strand, within BWI76_RS05815at 1221.033 kb on + strand, within BWI76_RS05815at 1221.033 kb on + strand, within BWI76_RS05815at 1221.033 kb on + strand, within BWI76_RS05815at 1221.033 kb on + strand, within BWI76_RS05815at 1221.033 kb on + strand, within BWI76_RS05815at 1221.033 kb on + strand, within BWI76_RS05815at 1221.033 kb on + strand, within BWI76_RS05815at 1221.033 kb on + strand, within BWI76_RS05815at 1221.036 kb on - strand, within BWI76_RS05815at 1221.036 kb on - strand, within BWI76_RS05815at 1221.041 kb on - strand, within BWI76_RS05815at 1221.041 kb on - strand, within BWI76_RS05815at 1221.041 kb on - strand, within BWI76_RS05815at 1221.041 kb on - strand, within BWI76_RS05815at 1221.046 kb on + strand, within BWI76_RS05815at 1221.078 kb on + strand, within BWI76_RS05815at 1221.078 kb on + strand, within BWI76_RS05815at 1221.078 kb on + strand, within BWI76_RS05815at 1221.078 kb on + strand, within BWI76_RS05815at 1221.078 kb on + strand, within BWI76_RS05815at 1221.078 kb on + strand, within BWI76_RS05815at 1221.078 kb on + strand, within BWI76_RS05815at 1221.078 kb on + strand, within BWI76_RS05815at 1221.078 kb on + strand, within BWI76_RS05815at 1221.078 kb on + strand, within BWI76_RS05815at 1221.086 kb on - strand, within BWI76_RS05815at 1221.087 kb on - strand, within BWI76_RS05815at 1221.098 kb on + strand, within BWI76_RS05815at 1221.098 kb on - strand, within BWI76_RS05815at 1221.106 kb on - strand, within BWI76_RS05815at 1221.156 kb on - strand, within BWI76_RS05815at 1221.414 kb on - strand, within BWI76_RS05815at 1221.479 kb on + strandat 1221.487 kb on - strandat 1221.518 kb on + strandat 1221.518 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,219,380 + BWI76_RS05795 0.77 +0.4
1,219,532 - -0.9
1,219,752 + BWI76_RS05800 0.83 -0.4
1,219,947 - BWI76_RS05805 0.24 -0.1
1,219,965 - BWI76_RS05805 0.27 -0.9
1,219,980 - BWI76_RS05805 0.30 -0.2
1,219,996 + BWI76_RS05805 0.32 +0.9
1,220,092 + BWI76_RS05805 0.49 -0.3
1,220,105 - BWI76_RS05805 0.52 +0.4
1,220,161 + BWI76_RS05805 0.62 -2.1
1,220,166 + BWI76_RS05805 0.62 -0.7
1,220,166 + BWI76_RS05805 0.62 +0.4
1,220,166 + BWI76_RS05805 0.62 -0.9
1,220,213 + BWI76_RS05805 0.71 -0.8
1,220,221 - BWI76_RS05805 0.72 +0.4
1,220,361 + -0.4
1,220,432 - BWI76_RS05810 0.48 -2.1
1,220,628 + +1.0
1,220,638 + +0.1
1,220,638 + +0.9
1,220,656 + -0.1
1,220,656 + -1.1
1,220,664 - -0.3
1,220,672 + +0.9
1,220,672 + -0.5
1,220,672 + -0.9
1,220,677 + +0.1
1,220,677 + +0.1
1,220,734 - -0.3
1,220,774 + -0.1
1,220,783 + +0.2
1,220,791 - -0.3
1,220,796 + +0.2
1,220,806 + +0.0
1,220,814 - -0.2
1,220,818 + +0.1
1,220,818 + -0.5
1,220,819 + +0.1
1,220,819 + -0.5
1,220,819 + -0.5
1,220,819 + -0.4
1,220,829 + -0.0
1,220,829 + -1.0
1,220,829 + -0.8
1,220,829 + -0.1
1,220,829 + +0.3
1,220,829 + +0.6
1,220,829 + -0.4
1,220,829 + +0.1
1,220,830 + -0.4
1,220,830 + -0.3
1,220,830 + +0.0
1,220,831 + -0.8
1,220,837 - +0.2
1,220,837 - +0.0
1,220,837 - -1.1
1,220,837 - -0.2
1,220,837 - +0.0
1,220,838 - -1.2
1,220,838 - +0.3
1,220,838 - -0.0
1,220,838 - +2.0
1,220,838 - +1.2
1,220,839 - -1.8
1,220,839 - -0.4
1,220,841 + -0.3
1,220,841 + -1.4
1,220,855 + +0.3
1,220,855 + +0.2
1,220,856 + -1.4
1,220,856 + -0.3
1,220,856 + +0.0
1,220,856 + +0.7
1,220,863 - -0.7
1,220,863 - +0.5
1,220,864 - +0.0
1,220,865 + -0.3
1,220,865 + +0.3
1,220,865 + -0.0
1,220,865 + -0.3
1,220,865 + -0.4
1,220,867 + +0.8
1,220,869 + +0.0
1,220,871 - -0.7
1,220,873 - +0.2
1,220,873 - -0.5
1,220,873 - -0.7
1,220,873 - +0.5
1,220,875 + -0.4
1,220,875 - +1.1
1,220,875 - -0.0
1,220,875 - +0.2
1,220,875 - -0.9
1,220,875 - -0.5
1,220,883 - +0.4
1,220,930 + +0.3
1,220,930 + -0.5
1,220,935 + +0.5
1,220,938 - -1.4
1,220,938 - -1.0
1,220,938 - +0.1
1,220,941 - +0.1
1,220,964 + BWI76_RS05815 0.11 +0.1
1,220,966 + BWI76_RS05815 0.12 +0.8
1,220,974 - BWI76_RS05815 0.13 +0.3
1,220,976 + BWI76_RS05815 0.13 -0.6
1,220,976 + BWI76_RS05815 0.13 -0.5
1,220,976 + BWI76_RS05815 0.13 -0.0
1,220,984 - BWI76_RS05815 0.15 -0.2
1,220,991 + BWI76_RS05815 0.16 +0.0
1,221,021 + BWI76_RS05815 0.20 -0.2
1,221,023 + BWI76_RS05815 0.20 -0.7
1,221,028 + BWI76_RS05815 0.21 +0.1
1,221,028 + BWI76_RS05815 0.21 -0.4
1,221,028 + BWI76_RS05815 0.21 -0.4
1,221,028 + BWI76_RS05815 0.21 -0.2
1,221,028 + BWI76_RS05815 0.21 +0.6
1,221,029 - BWI76_RS05815 0.21 -1.2
1,221,029 - BWI76_RS05815 0.21 +0.5
1,221,029 - BWI76_RS05815 0.21 +0.8
1,221,033 + BWI76_RS05815 0.22 -0.3
1,221,033 + BWI76_RS05815 0.22 -0.3
1,221,033 + BWI76_RS05815 0.22 -1.2
1,221,033 + BWI76_RS05815 0.22 -0.0
1,221,033 + BWI76_RS05815 0.22 +2.2
1,221,033 + BWI76_RS05815 0.22 -0.1
1,221,033 + BWI76_RS05815 0.22 +0.1
1,221,033 + BWI76_RS05815 0.22 -0.4
1,221,036 - BWI76_RS05815 0.22 +0.1
1,221,036 - BWI76_RS05815 0.22 -0.8
1,221,041 - BWI76_RS05815 0.23 -0.8
1,221,041 - BWI76_RS05815 0.23 +0.1
1,221,041 - BWI76_RS05815 0.23 -1.6
1,221,041 - BWI76_RS05815 0.23 -0.2
1,221,046 + BWI76_RS05815 0.24 -0.9
1,221,078 + BWI76_RS05815 0.29 -0.5
1,221,078 + BWI76_RS05815 0.29 -0.5
1,221,078 + BWI76_RS05815 0.29 +0.1
1,221,078 + BWI76_RS05815 0.29 -0.9
1,221,078 + BWI76_RS05815 0.29 +1.5
1,221,078 + BWI76_RS05815 0.29 +0.2
1,221,078 + BWI76_RS05815 0.29 +0.2
1,221,078 + BWI76_RS05815 0.29 -0.3
1,221,078 + BWI76_RS05815 0.29 -0.3
1,221,078 + BWI76_RS05815 0.29 -0.0
1,221,086 - BWI76_RS05815 0.30 +0.1
1,221,087 - BWI76_RS05815 0.30 -0.6
1,221,098 + BWI76_RS05815 0.32 +0.4
1,221,098 - BWI76_RS05815 0.32 -0.6
1,221,106 - BWI76_RS05815 0.33 -0.3
1,221,156 - BWI76_RS05815 0.41 -0.3
1,221,414 - BWI76_RS05815 0.80 +0.9
1,221,479 + +0.1
1,221,487 - +0.3
1,221,518 + -0.9
1,221,518 + -0.2

Or see this region's nucleotide sequence